Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

44448288 .. 44450074

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGTTCGAAGTCATACAATTGAACCCCAAATGCTATCGTGCCGGTGCAAGACAGTGAAGACCAAGAGGACGATTATTGCTGGCCTAAATTCAGATACCTGCAGTAGAGAAATGCTGCTTGGATTGCTCACTTCTGTTGTTAAACCAGAAGACACTGTGATAGCTATTCATGTTGAAGAAACAGATGATACATTTGATCCGAACACTTTCCACATTCATGAAGATCTCTGCAAGTCCAAGAAGGTAGATTTCCAAATAAAGGTCTGCATAGGAGATTCATACATTTCTGAATTAACTTACCAAGTTAGAGTCAGCTATGCTACAATCCTTGCACTTGGTTGCAGCTCTTCAGGGCTCAATGTTTCAGCTACCAGTGCTTGCCTGAAAGGTTTACCTCCTTCATGCATACTTCTGGTAATGAATAGTGTTGGAAGAATCTTATTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGGTAGCCCTGCCCCTGCAATCTTCTCAGTCATTTTCTTCAGTGTACGCTTGTTATAATCAGTCAAACGCCAACCGGAAATTGCACAAGTCATTGACAATACCATCTGCTCCTCCCGTATCATCAATTCGGCGAATTACTAGAAGGGCACTCTCTTCTGCACATAAAACAGTGGAGGTTTCCGATTTTGTGGCTCAAAAGCTGTTTCATAGATTGGGACTACTAGAAGCAGAAGGATCCAGCAGGCATTTTGCCTCCCAAGAACTTCGCTATGCAACTAATAATTTCAGCTCTGACATGGTGATTGGAGAGGGTGGACATAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTTAGTGATCTTTTCCGCGAAGTAGATTTTCTATCTAGTATGAATCACAAGAACATTGTTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAAGCTTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAGGTTGCAATTGGTGTGGCAAAAGCTTTGGAGTACCTTCATCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGTGAACCAATATTGTCCGATTTTGGAGCAGCAATGGTACTTCGTCAATCTCAGCATGCAGATGCGCCATTTGATGTTGTTGGGACGTTTGGATACTTAGCCCCAGAGTACATGATGTATGGCAAGGTTGATGAGAAGATAGATGTGTACTCATATGGAGTGGTGGAAAGAGGCTATTCAAACCGACCAGGAGATTCGAGAAAGCTTAGTACTTTGGGCAAGGTCCCTATTGAGCTGTGGCATATGCGAACGTCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

469

Amino Acids

52.16

Weight (kDa)

8.8

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	257 - 438	2.9e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	259 - 438	7.8e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	107
AccII	CGCG	1 cut(s)	891
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	3 cut(s)	191, 708, 721
AcsI	RAATTY	2 cut(s)	88, 1009
AcuI	CTGAAG	2 cut(s)	333, 501
AfaI	GTAC	7 cut(s)	524, 809, 1076, 1188, 1259, 1298, 1360
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	23, 176, 824, 1329
AjnI	CCWGG	1 cut(s)	1336
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
Alw26I	GTCTC	1 cut(s)	1009
AlwI	GGATC	3 cut(s)	191, 708, 721
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	115, 342, 836, 839, 1178
ApoI	RAATTY	2 cut(s)	88, 1009
Asp700I	GAANNNNTTC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	1216
AspS9I	GGNCC	1 cut(s)	1372
AsuHPI	GGTGA	1 cut(s)	790
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	1372
BaeGI	GKGCMC	1 cut(s)	628
BamHI	GGATCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	3 cut(s)	65, 156, 1116
BbvI	GCAGC	5 cut(s)	102, 354, 823, 851, 1190
BccI	CCATC	3 cut(s)	589, 821, 1109
BciT130I	CCWGG	1 cut(s)	1338
BciVI	GTATCC	1 cut(s)	1235
BcoDI	GTCTC	1 cut(s)	1009
BfaI	CTAG	3 cut(s)	618, 701, 909
BfmI	CTRYAG	2 cut(s)	100, 837
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	1235
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	5 cut(s)	116, 343, 837, 840, 1179
BlsI	GCNGC	5 cut(s)	117, 344, 838, 841, 1180
BmcAI	AGTACT	1 cut(s)	1360
Bme1390I	CCNGG	1 cut(s)	1338
Bme18I	GGWCC	1 cut(s)	1372
BmgT120I	GGNCC	1 cut(s)	1372
BmiI	GGNNCC	2 cut(s)	715, 1374
BmrFI	CCNGG	1 cut(s)	1338
BmsI	GCATC	2 cut(s)	954, 1201
BpiI	GAAGAC	3 cut(s)	65, 156, 1116
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	1021
BsaWI	WCCGGW	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	1188
BseBI	CCWGG	1 cut(s)	1338
BseGI	GGATG	2 cut(s)	1044, 1120
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	1188
BseMII	CTCAG	2 cut(s)	518, 1214
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	3 cut(s)	579, 1018, 1127
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	5 cut(s)	102, 354, 823, 851, 1190
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	43, 553
BslFI	GGGAC	3 cut(s)	708, 1246, 1358
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	1009
BsmFI	GGGAC	3 cut(s)	708, 1246, 1358
BsnI	GGCC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	357, 628
Bsp143I	GATC	5 cut(s)	196, 223, 713, 880, 982
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	517, 1213
BspFNI	CGCG	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	715, 1374
BspMAI	CTGCAG	2 cut(s)	104, 841
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	3 cut(s)	191, 708, 721
BspQI	GCTCTTC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	1188
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	5 cut(s)	196, 223, 713, 880, 982
Bst2UI	CCWGG	1 cut(s)	1338
Bst4CI	ACNGT	3 cut(s)	55, 157, 649
Bst6I	CTCTTC	2 cut(s)	352, 637
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	5 cut(s)	82, 379, 722, 969, 1206
BstDEI	CTNAG	5 cut(s)	504, 1022, 1200, 1246, 1355
BstF5I	GGATG	2 cut(s)	1044, 1120
BstFNI	CGCG	1 cut(s)	891
BstHHI	GCGC	1 cut(s)	1216
BstKTI	GATC	5 cut(s)	199, 226, 716, 883, 985
BstMAI	GTCTC	1 cut(s)	1009
BstMBI	GATC	5 cut(s)	196, 223, 713, 880, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 374
BstNI	CCWGG	1 cut(s)	1338
BstNSI	RCATGY	1 cut(s)	1208
BstSCI	CCNGG	1 cut(s)	1336
BstSFI	CTRYAG	2 cut(s)	100, 837
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	5 cut(s)	102, 354, 823, 851, 1190
BstV2I	GAAGAC	3 cut(s)	65, 156, 1116
BstX2I	RGATCY	2 cut(s)	223, 713
BstYI	RGATCY	2 cut(s)	223, 713
BsuI	GTATCC	1 cut(s)	1235
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	1044, 1120
BtsIMutI	CAGTG	5 cut(s)	60, 153, 379, 525, 654
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	5 cut(s)	82, 379, 722, 969, 1206
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	1 cut(s)	1216
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	1372
Csp6I	GTAC	7 cut(s)	523, 808, 1075, 1187, 1258, 1297, 1359
CspCI	CAANNNNNGTGG	4 cut(s)	1007, 1038, 1042, 1073
CviAII	CATG	8 cut(s)	170, 218, 402, 775, 992, 1145, 1205, 1261
CviQI	GTAC	7 cut(s)	523, 808, 1075, 1187, 1258, 1297, 1359
DdeI	CTNAG	5 cut(s)	504, 1022, 1200, 1246, 1355
DpnI	GATC	5 cut(s)	198, 225, 715, 882, 984
DpnII	GATC	5 cut(s)	196, 223, 713, 880, 982
Eam1104I	CTCTTC	2 cut(s)	352, 637
EarI	CTCTTC	2 cut(s)	352, 637
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	1372
Eco57I	CTGAAG	2 cut(s)	333, 501
EcoO109I	RGGNCCY	1 cut(s)	1372
EcoRII	CCWGG	1 cut(s)	1336
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	8 cut(s)	173, 221, 405, 778, 995, 1148, 1208, 1264
FaqI	GGGAC	3 cut(s)	708, 1246, 1358
FatI	CATG	8 cut(s)	169, 217, 401, 774, 991, 1144, 1204, 1260
FauNDI	CATATG	2 cut(s)	1303, 1392
Fnu4HI	GCNGC	5 cut(s)	116, 343, 837, 840, 1179
FokI	GGATG	2 cut(s)	1051, 1127
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	116, 343, 837, 840, 1179
FspBI	CTAG	3 cut(s)	618, 701, 909
GlaI	GCGC	1 cut(s)	1215
GluI	GCNGC	5 cut(s)	116, 343, 837, 840, 1179
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	43, 553
HhaI	GCGC	1 cut(s)	1216
Hin1II	CATG	8 cut(s)	173, 221, 405, 778, 995, 1148, 1208, 1264
Hin6I	GCGC	1 cut(s)	1214
HinP1I	GCGC	1 cut(s)	1214
HindIII	AAGCTT	3 cut(s)	997, 1065, 1352
HinfI	GANTC	5 cut(s)	275, 309, 435, 916, 1343
HpaII	CCGG	2 cut(s)	43, 553
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	6 cut(s)	392, 523, 794, 808, 1154, 1297
Hpy188I	TCNGA	8 cut(s)	94, 201, 289, 447, 661, 772, 936, 1168
Hpy188III	TCNNGA	3 cut(s)	218, 821, 1347
Hpy8I	GTNNAC	6 cut(s)	392, 523, 794, 808, 1154, 1297
HpyAV	CCTTC	6 cut(s)	235, 408, 615, 704, 1036, 1088
HpyCH4III	ACNGT	3 cut(s)	55, 157, 649
HpyCH4IV	ACGT	2 cut(s)	1235, 1400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 374
HpyF3I	CTNAG	5 cut(s)	504, 1022, 1200, 1246, 1355
HpySE526I	ACGT	2 cut(s)	1235, 1400
Hsp92II	CATG	8 cut(s)	173, 221, 405, 778, 995, 1148, 1208, 1264
HspAI	GCGC	1 cut(s)	1214
Kzo9I	GATC	5 cut(s)	196, 223, 713, 880, 982
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	592, 1175
Lsp1109I	GCAGC	5 cut(s)	102, 354, 823, 851, 1190
LweI	GCATC	2 cut(s)	954, 1201
MaeI	CTAG	3 cut(s)	618, 701, 909
MaeII	ACGT	2 cut(s)	1235, 1400
MalI	GATC	5 cut(s)	198, 225, 715, 882, 984
MboI	GATC	5 cut(s)	196, 223, 713, 880, 982
MfeI	CAATTG	2 cut(s)	18, 1050
MflI	RGATCY	2 cut(s)	223, 713
MhlI	GDGCHC	2 cut(s)	357, 628
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	409
Mph1103I	ATGCAT	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	2 cut(s)	141, 293
MslI	CAYNNNNRTG	4 cut(s)	216, 1113, 1149, 1209
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	2 cut(s)	43, 553
MspR9I	CCNGG	1 cut(s)	1338
MunI	CAATTG	2 cut(s)	18, 1050
MvaI	CCWGG	1 cut(s)	1338
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	2 cut(s)	124, 374
NdeI	CATATG	2 cut(s)	1303, 1392
NdeII	GATC	5 cut(s)	196, 223, 713, 880, 982
NlaIII	CATG	8 cut(s)	173, 221, 405, 778, 995, 1148, 1208, 1264
NlaIV	GGNNCC	2 cut(s)	715, 1374
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	1208
NspV	TTCGAA	1 cut(s)	7
PaeI	GCATGC	1 cut(s)	1208
PagI	TCATGA	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	275, 435, 916, 1343
PkrI	GCNGC	5 cut(s)	117, 344, 838, 841, 1180
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	1372
PsiI	TTATAA	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	1372
Psp6I	CCWGG	1 cut(s)	1336
PspGI	CCWGG	1 cut(s)	1336
PspN4I	GGNNCC	2 cut(s)	715, 1374
PspPI	GGNCC	1 cut(s)	1372
PspPPI	RGGWCCY	1 cut(s)	1372
PstI	CTGCAG	2 cut(s)	104, 841
PsuI	RGATCY	2 cut(s)	223, 713
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	7 cut(s)	524, 809, 1076, 1188, 1259, 1298, 1360
RsaNI	GTAC	7 cut(s)	523, 808, 1075, 1187, 1258, 1297, 1359
RseI	CAYNNNNRTG	4 cut(s)	216, 1113, 1149, 1209
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	141, 293
SatI	GCNGC	5 cut(s)	116, 343, 837, 840, 1179
Sau3AI	GATC	5 cut(s)	196, 223, 713, 880, 982
Sau96I	GGNCC	1 cut(s)	1372
ScaI	AGTACT	1 cut(s)	1360
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	1338
SduI	GDGCHC	2 cut(s)	357, 628
SfaNI	GCATC	2 cut(s)	954, 1201
SfcI	CTRYAG	2 cut(s)	100, 837
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	1 cut(s)	1372
SmiMI	CAYNNNNRTG	4 cut(s)	216, 1113, 1149, 1209
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
SphI	GCATGC	1 cut(s)	1208
SsiI	CCGC	1 cut(s)	889
SspI	AATATT	1 cut(s)	1161
SspMI	CTAG	3 cut(s)	618, 701, 909
StyD4I	CCNGG	1 cut(s)	1336
TaaI	ACNGT	3 cut(s)	55, 157, 649
TaiI	ACGT	2 cut(s)	1238, 1403
TaqI	TCGA	3 cut(s)	7, 832, 1346
TatI	WGTACW	3 cut(s)	1257, 1296, 1358
TfiI	GAWTC	4 cut(s)	275, 435, 916, 1343
Tru1I	TTAA	2 cut(s)	141, 293
Tru9I	TTAA	2 cut(s)	141, 293
TscAI	CASTG	5 cut(s)	60, 160, 379, 525, 654
TseI	GCWGC	5 cut(s)	115, 342, 836, 839, 1178
TspRI	CASTG	5 cut(s)	60, 160, 379, 525, 654
VpaK11BI	GGWCC	1 cut(s)	1372
XapI	RAATTY	2 cut(s)	88, 1009
XceI	RCATGY	1 cut(s)	1208
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	3 cut(s)	618, 701, 909
ZrmI	AGTACT	1 cut(s)	1360
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.