Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Reverse (-)

26709310 .. 26711683

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCTATCTTGCAGGTGCAAGACAGTGAAGACCAAGAGGACGATTATTGCTGGCCTAAATTCAGATACCTGCAGTAGAGAAATGCTGCTTGGATTGCTCACTTCTGTTGTTAAACCAGAAGACACTGTGATAGCTATTCATGTTGAAGAAACAGATGACACATTTGATCCGAACACTTTCCACAATCATGAAGATCTCTGCAAGTCCAAGAAGGTAGATTTCCAAATAAAGGTCTGCATAGGAGATTCATACATTTCTGAATTAACTTACCAAGTTAGAGTCAGCTATGCTACAATCCTTACTATTGGTTGCAGCTCTTCAGGGCTCAATGTTTCAGCTACCAGTGCTTGCCTGAAAGGTTTACCTCCTTCATGCACACTTCTGGTAATGAATAGTGTTGGAAGAATCTTATTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGGTAGCCCTGCCCCTGCAATCTTCTCAGTCATTTTCTTCAGTGTACACTTGTTATAATCAGTCGAATACCACCCGGCAATTGCACAAGTCATTGACAATACCATCTGCTCCTCCCATATCATCAATTGGGCGAATTACTAGAAGGGCGCTCTCTTCTGCGCATAAAACAGTGGAGGTTTCCGATTTTGTGGCTCAAAAGCTGTTTCATAGATTGGCACTACTAGAAGCAGAAGGATCCAGCAGGCATTTCGCCTCCCAAGAGCTTCGTTATGCAACTAACAATTTCAGCTCTGACATGGTGATTGGAGAGGGTGGACATAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTCAATGATCTTTTCCGTGAAGTAGATTTTCTATCTAGTATGAATCACAAAAACATTGTTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAACCGTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAAGTTGCAATTGGTGTGGCAAAAGCTTTGGAGTACCTTCATCATTTTCACAACCCCCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGTGAACCAATAGTGAGTTCTAGAATAATATCACTTGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

388

Amino Acids

42.94

Weight (kDa)

8.77

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	247 - 373	1.9e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	249 - 373	2.3e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AarI	CACCTGC	1 cut(s)	3
Acc16I	TGCGCA	1 cut(s)	609
Acc36I	ACCTGC	2 cut(s)	3, 77
AclWI	GGATC	3 cut(s)	161, 678, 691
AcsI	RAATTY	3 cut(s)	58, 979, 1157
AcuI	CTGAAG	2 cut(s)	303, 471
AfaI	GTAC	3 cut(s)	494, 779, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	229, 975
AgsI	TTSAA	3 cut(s)	146, 794, 1157
AjuI	GAANNNNNNNTTGG	4 cut(s)	72, 104, 1120, 1152
Alw26I	GTCTC	1 cut(s)	979
AlwI	GGATC	3 cut(s)	161, 678, 691
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	4 cut(s)	85, 312, 806, 809
ApoI	RAATTY	3 cut(s)	58, 979, 1157
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	2 cut(s)	598, 610
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	3 cut(s)	35, 126, 1086
BbvI	GCAGC	4 cut(s)	72, 324, 793, 821
BccI	CCATC	3 cut(s)	559, 791, 1079
BcgI	CGANNNNNNTGC	2 cut(s)	679, 713
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	979
BfaI	CTAG	4 cut(s)	588, 671, 879, 1140
BfmI	CTRYAG	2 cut(s)	70, 807
BfoI	RGCGCY	1 cut(s)	599
BfuAI	ACCTGC	2 cut(s)	3, 77
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	4 cut(s)	86, 313, 807, 810
BlsI	GCNGC	4 cut(s)	87, 314, 808, 811
Bme1390I	CCNGG	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	685, 967
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	924
BpiI	GAAGAC	3 cut(s)	35, 126, 1086
BpuMI	CCSGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 975
Bse1I	ACTGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	1014, 1090
BseLI	CCNNNNNNNGG	2 cut(s)	229, 975
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	3 cut(s)	549, 988, 1097
BseXI	GCAGC	4 cut(s)	72, 324, 793, 821
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	229, 975
BsmAI	GTCTC	1 cut(s)	979
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	5 cut(s)	166, 193, 683, 850, 952
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	685, 967
BspMAI	CTGCAG	2 cut(s)	74, 811
BspMI	ACCTGC	2 cut(s)	3, 77
BspPI	GGATC	3 cut(s)	161, 678, 691
BspQI	GCTCTTC	1 cut(s)	322
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	342
BssMI	GATC	5 cut(s)	166, 193, 683, 850, 952
Bst4CI	ACNGT	4 cut(s)	25, 127, 619, 970
Bst6I	CTCTTC	2 cut(s)	322, 607
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	4 cut(s)	52, 349, 692, 939
BstDEI	CTNAG	2 cut(s)	474, 992
BstF5I	GGATG	2 cut(s)	1014, 1090
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	2 cut(s)	598, 610
BstKTI	GATC	5 cut(s)	169, 196, 686, 853, 955
BstMAI	GTCTC	1 cut(s)	979
BstMBI	GATC	5 cut(s)	166, 193, 683, 850, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 344
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	2 cut(s)	70, 807
BstV1I	GCAGC	4 cut(s)	72, 324, 793, 821
BstV2I	GAAGAC	3 cut(s)	35, 126, 1086
BstX2I	RGATCY	2 cut(s)	193, 683
BstYI	RGATCY	2 cut(s)	193, 683
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	1014, 1090
BtsIMutI	CAGTG	5 cut(s)	30, 123, 349, 495, 624
BveI	ACCTGC	2 cut(s)	3, 77
Cac8I	GCNNGC	4 cut(s)	52, 349, 692, 939
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	2 cut(s)	598, 610
Csp6I	GTAC	3 cut(s)	493, 778, 1045
CspCI	CAANNNNNGTGG	4 cut(s)	977, 1008, 1012, 1043
CviAII	CATG	6 cut(s)	140, 188, 372, 745, 962, 1115
CviQI	GTAC	3 cut(s)	493, 778, 1045
DdeI	CTNAG	2 cut(s)	474, 992
DpnI	GATC	5 cut(s)	168, 195, 685, 852, 954
DpnII	GATC	5 cut(s)	166, 193, 683, 850, 952
Eam1104I	CTCTTC	2 cut(s)	322, 607
EarI	CTCTTC	2 cut(s)	322, 607
Eco24I	GRGCYC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	303, 471
EcoRI	GAATTC	1 cut(s)	1157
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	6 cut(s)	143, 191, 375, 748, 965, 1118
FatI	CATG	6 cut(s)	139, 187, 371, 744, 961, 1114
Fnu4HI	GCNGC	4 cut(s)	86, 313, 807, 810
FokI	GGATG	2 cut(s)	1021, 1097
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	4 cut(s)	86, 313, 807, 810
FspBI	CTAG	4 cut(s)	588, 671, 879, 1140
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	2 cut(s)	597, 609
GluI	GCNGC	4 cut(s)	86, 313, 807, 810
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	523
HhaI	GCGC	2 cut(s)	598, 610
Hin1II	CATG	6 cut(s)	143, 191, 375, 748, 965, 1118
Hin6I	GCGC	2 cut(s)	596, 608
HinP1I	GCGC	2 cut(s)	596, 608
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	4 cut(s)	245, 279, 405, 886
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	6 cut(s)	362, 493, 495, 764, 778, 1124
Hpy188I	TCNGA	7 cut(s)	64, 171, 259, 417, 631, 742, 906
Hpy188III	TCNNGA	3 cut(s)	188, 791, 1140
Hpy8I	GTNNAC	6 cut(s)	362, 493, 495, 764, 778, 1124
HpyAV	CCTTC	5 cut(s)	205, 378, 585, 674, 1058
HpyCH4III	ACNGT	4 cut(s)	25, 127, 619, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 344
HpyF3I	CTNAG	2 cut(s)	474, 992
Hsp92II	CATG	6 cut(s)	143, 191, 375, 748, 965, 1118
HspAI	GCGC	2 cut(s)	596, 608
Kzo9I	GATC	5 cut(s)	166, 193, 683, 850, 952
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	72, 324, 793, 821
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	4 cut(s)	588, 671, 879, 1140
MalI	GATC	5 cut(s)	168, 195, 685, 852, 954
MboI	GATC	5 cut(s)	166, 193, 683, 850, 952
MfeI	CAATTG	3 cut(s)	527, 573, 1020
MflI	RGATCY	2 cut(s)	193, 683
MhlI	GDGCHC	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	111, 263
MslI	CAYNNNNRTG	3 cut(s)	186, 1083, 1119
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	523
MspR9I	CCNGG	1 cut(s)	523
MunI	CAATTG	3 cut(s)	527, 573, 1020
MwoI	GCNNNNNNNGC	2 cut(s)	94, 344
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	5 cut(s)	166, 193, 683, 850, 952
NlaIII	CATG	6 cut(s)	143, 191, 375, 748, 965, 1118
NlaIV	GGNNCC	2 cut(s)	685, 967
NsbI	TGCGCA	1 cut(s)	609
PagI	TCATGA	1 cut(s)	187
PaqCI	CACCTGC	1 cut(s)	3
PciSI	GCTCTTC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	245, 405, 886
PkrI	GCNGC	4 cut(s)	87, 314, 808, 811
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	685, 967
PstI	CTGCAG	2 cut(s)	74, 811
PsuI	RGATCY	2 cut(s)	193, 683
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	3 cut(s)	494, 779, 1046
RsaNI	GTAC	3 cut(s)	493, 778, 1045
RseI	CAYNNNNRTG	3 cut(s)	186, 1083, 1119
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	111, 263
SatI	GCNGC	4 cut(s)	86, 313, 807, 810
Sau3AI	GATC	5 cut(s)	166, 193, 683, 850, 952
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	2 cut(s)	70, 807
SmiMI	CAYNNNNRTG	3 cut(s)	186, 1083, 1119
SspMI	CTAG	4 cut(s)	588, 671, 879, 1140
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	4 cut(s)	25, 127, 619, 970
TaqI	TCGA	2 cut(s)	512, 802
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	245, 405, 886
Tru1I	TTAA	2 cut(s)	111, 263
Tru9I	TTAA	2 cut(s)	111, 263
TscAI	CASTG	5 cut(s)	30, 130, 349, 495, 624
TseI	GCWGC	4 cut(s)	85, 312, 806, 809
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	5 cut(s)	30, 130, 349, 495, 624
XapI	RAATTY	3 cut(s)	58, 979, 1157
XbaI	TCTAGA	1 cut(s)	1139
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	4 cut(s)	588, 671, 879, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.