Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

13063070 .. 13066693

Gene Structure 3624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGGAGAGGCCACGGTGCTTTCTGGACATTAGCATAGGAGGAGAGCTTGAAGGACGGATAGTGATCGAGCTTTACGATCATGTGGTGCCCAAAACGGCAGAGAATTTCAGAGCTCTCTGTACTGGTGAGAAAGGCATTGGTCCCAATACTGGTGTCCCCCTCCACTACAAGGGAAACCGTTTTCATCGTGTTGTCAAAGGCTTTATGATACAAGGGGGTGATATTTCTGCTGGAGATGGCACGGGGGGAGAGTCTATCTATGGGTTGAAGTTTGAAGATGAAAATTTTGAATCGAAACATGAAAGGAAAGGCATGTTATCCATGGCCAATGCTGGTCCGAACACCAATGGGTCTCAGTTTTTTATCACAACAACTCGCACTGCTCATTTAGATGGGAAACATGTTGTGTTTGGGAAGGTAGTGAAAGGCATGGGAGTGGTTCGTTCAATAGAGCACATTTCTACTGGTGAGGGCGGTGATTCTCCGACTGTTGATGTTGTTATTGAGGATTGTGGAGAAATTCCTGAGGGGGCTGATGATGGAATATCTAATTTATTCAAAGATGGTGACACTTATCCTGATTGGCCAGCCGACCTGGATAATAGTCCTGATGAGCTTTCTTGGTGGATGACTTCTGTAGATTCAATCAAGGCTTTTGGTAATGAATATTTCAAGAAACAAGACTACAAGATGGCTCTCAGAAAGTATCGGAAATCTTTGCGCTATCTCGATATTTGTTGGGAGAAAGATGGAATTGATGAAGAGAAGAGTTCAAGTTTGAGAAAAACCAAGTCACAGATTTTCACTAACAGCTCTGCTTGTAAATTGAAATTGGGGGACCTGAAAGGAGCACTGTTAGACACTGACTTTGCAATGAGGGATGGAGAAAATAATGTTAAGGCTTTGTTTCGACAAGGTCAGGCATACATAGCACTTAATGATATTGATGCTGCAGTTGAGAGCTTCAAAAAGGCATTGGATTTGGAGCCCACTGATGCTGGAATAAAAAAGGAGCTTGCTGCTGCTAAGAAGAAGATTTCTAGTAGACATGATCAGGAGAAGAAGGCCTACAGCAAGATGTTTCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

364

Amino Acids

40.29

Weight (kDa)

5.98

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	9 - 173	9.8e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
TPR_1	PF00515	300 - 333	1.7e-07	Tetratricopeptide repeat
TPR_2	PF07719	301 - 333	6.3e-07	Tetratricopeptide repeat
TPR_8	PF13181	301 - 332	4.5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	1048
AciI	CCGC	1 cut(s)	477
AcoI	YGGCCR	2 cut(s)	327, 587
AcsI	RAATTY	3 cut(s)	106, 286, 522
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	152, 172
AflIII	ACRYGT	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
AluI	AGCT	7 cut(s)	49, 73, 116, 619, 816, 966, 1018
Alw21I	GWGCWC	3 cut(s)	118, 459, 856
Alw26I	GTCTC	1 cut(s)	360
AoxI	GGCC	4 cut(s)	11, 327, 587, 1068
ApeKI	GCWGC	3 cut(s)	953, 1022, 1025
ApoI	RAATTY	3 cut(s)	106, 286, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	143, 338, 841
AsuHPI	GGTGA	5 cut(s)	140, 233, 482, 491, 581
AvaII	GGWCC	3 cut(s)	143, 338, 841
AxyI	CCTNAGG	1 cut(s)	528
BaeGI	GKGCMC	1 cut(s)	93
BalI	TGGCCA	2 cut(s)	329, 589
BanI	GGYRCC	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	118, 993
BarI	GAAGNNNNNNTAC	2 cut(s)	1055, 1087
Bbv12I	GWGCWC	3 cut(s)	118, 459, 856
BbvI	GCAGC	3 cut(s)	940, 1009, 1012
BccI	CCATC	7 cut(s)	233, 389, 536, 560, 688, 746, 878
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	3 cut(s)	639, 954, 1072
BisI	GCNGC	3 cut(s)	954, 1023, 1026
BlsI	GCNGC	3 cut(s)	955, 1024, 1027
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	3 cut(s)	143, 338, 841
BmgT120I	GGNCC	3 cut(s)	143, 338, 841
BmiI	GGNNCC	4 cut(s)	90, 145, 842, 990
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	940, 988
BpmI	CTGGAG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	14, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 172
Bse1I	ACTGG	3 cut(s)	130, 157, 472
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	14, 324
BseGI	GGATG	2 cut(s)	636, 889
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	152, 172
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	3 cut(s)	371, 519, 715
BseNI	ACTGG	3 cut(s)	130, 157, 472
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	940, 1009, 1012
BshFI	GGCC	4 cut(s)	13, 329, 589, 1070
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	3 cut(s)	118, 459, 856
BslFI	GGGAC	3 cut(s)	129, 143, 854
BslI	CCNNNNNNNGG	2 cut(s)	152, 172
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	3 cut(s)	129, 143, 854
BsnI	GGCC	4 cut(s)	13, 329, 589, 1070
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
Bsp143I	GATC	3 cut(s)	66, 79, 1054
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	4 cut(s)	13, 329, 589, 1070
BspCNI	CTCAG	3 cut(s)	370, 520, 714
BspLI	GGNNCC	4 cut(s)	90, 145, 842, 990
BspMAI	CTGCAG	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	3 cut(s)	130, 157, 472
BssECI	CCNNGG	2 cut(s)	14, 324
BssMI	GATC	3 cut(s)	66, 79, 1054
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	18, 182, 493, 858
Bst6I	CTCTTC	2 cut(s)	759, 764
BstC8I	GCNNGC	2 cut(s)	591, 1020
BstDEI	CTNAG	4 cut(s)	357, 528, 701, 1029
BstDSI	CCRYGG	2 cut(s)	14, 324
BstF5I	GGATG	2 cut(s)	636, 889
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	3 cut(s)	69, 82, 1057
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	66, 79, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	2 cut(s)	319, 407
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	3 cut(s)	639, 954, 1072
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	940, 1009, 1012
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	4 cut(s)	13, 329, 589, 1070
BtgI	CCRYGG	2 cut(s)	14, 324
BtsCI	GGATG	2 cut(s)	636, 889
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	4 cut(s)	381, 854, 864, 993
Cac8I	GCNNGC	2 cut(s)	591, 1020
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	3 cut(s)	143, 338, 841
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	7 cut(s)	83, 302, 316, 325, 404, 433, 1052
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	4 cut(s)	357, 528, 701, 1029
DpnI	GATC	3 cut(s)	68, 81, 1056
DpnII	GATC	3 cut(s)	66, 79, 1054
EaeI	YGGCCR	2 cut(s)	327, 587
Eam1104I	CTCTTC	2 cut(s)	759, 764
EarI	CTCTTC	2 cut(s)	759, 764
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	1070
Eco24I	GRGCYC	2 cut(s)	118, 993
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	3 cut(s)	143, 338, 841
Eco53kI	GAGCTC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	2 cut(s)	118, 993
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	7 cut(s)	86, 305, 319, 328, 407, 436, 1055
FaqI	GGGAC	3 cut(s)	129, 143, 854
FatI	CATG	7 cut(s)	82, 301, 315, 324, 403, 432, 1051
FbaI	TGATCA	1 cut(s)	1054
FblI	GTMKAC	1 cut(s)	1048
Fnu4HI	GCNGC	3 cut(s)	954, 1023, 1026
FokI	GGATG	2 cut(s)	643, 896
FriOI	GRGCYC	2 cut(s)	118, 993
Fsp4HI	GCNGC	3 cut(s)	954, 1023, 1026
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	3 cut(s)	954, 1023, 1026
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	4 cut(s)	13, 329, 589, 1070
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	7 cut(s)	86, 305, 319, 328, 407, 436, 1055
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	4 cut(s)	254, 293, 482, 644
HphI	GGTGA	5 cut(s)	140, 233, 482, 491, 581
Hpy166II	GTNNAC	1 cut(s)	1049
Hpy188I	TCNGA	6 cut(s)	113, 342, 489, 704, 714, 1089
Hpy188III	TCNNGA	7 cut(s)	26, 527, 581, 611, 676, 731, 1058
Hpy8I	GTNNAC	1 cut(s)	1049
HpyAV	CCTTC	3 cut(s)	47, 412, 1060
HpyCH4III	ACNGT	4 cut(s)	18, 182, 493, 858
HpyCH4V	TGCA	2 cut(s)	875, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	4 cut(s)	357, 528, 701, 1029
Hsp92II	CATG	7 cut(s)	86, 305, 319, 328, 407, 436, 1055
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	3 cut(s)	66, 79, 1054
LmnI	GCTCC	3 cut(s)	851, 988, 1015
Lsp1109I	GCAGC	3 cut(s)	940, 1009, 1012
LweI	GCATC	2 cut(s)	940, 988
MaeI	CTAG	1 cut(s)	1044
MaeIII	GTNAC	2 cut(s)	569, 795
MalI	GATC	3 cut(s)	68, 81, 1056
MboI	GATC	3 cut(s)	66, 79, 1054
MboII	GAAGA	6 cut(s)	290, 776, 781, 1045, 1048, 1075
MhlI	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
MlsI	TGGCCA	2 cut(s)	329, 589
MluCI	AATT	7 cut(s)	106, 286, 522, 553, 756, 827, 833
MluNI	TGGCCA	2 cut(s)	329, 589
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	7 cut(s)	3, 35, 173, 466, 502, 523, 873
Mox20I	TGGCCA	2 cut(s)	329, 589
MscI	TGGCCA	2 cut(s)	329, 589
MseI	TTAA	2 cut(s)	900, 939
MslI	CAYNNNNRTG	2 cut(s)	393, 437
Msp20I	TGGCCA	2 cut(s)	329, 589
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	3 cut(s)	66, 79, 1054
NlaIII	CATG	7 cut(s)	86, 305, 319, 328, 407, 436, 1055
NlaIV	GGNNCC	4 cut(s)	90, 145, 842, 990
NmuCI	GTSAC	2 cut(s)	569, 795
NspI	RCATGY	2 cut(s)	319, 407
PceI	AGGCCT	1 cut(s)	1070
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	293, 482, 644
PflFI	GACNNNGTC	1 cut(s)	918
PkrI	GCNGC	3 cut(s)	955, 1024, 1027
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	841
PscI	ACATGT	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	4 cut(s)	90, 145, 842, 990
PspPI	GGNCC	3 cut(s)	143, 338, 841
PspPPI	RGGWCCY	1 cut(s)	841
PstI	CTGCAG	1 cut(s)	958
PsyI	GACNNNGTC	1 cut(s)	918
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	393, 437
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	900, 939
SatI	GCNGC	3 cut(s)	954, 1023, 1026
Sau3AI	GATC	3 cut(s)	66, 79, 1054
Sau96I	GGNCC	3 cut(s)	143, 338, 841
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	5 cut(s)	93, 118, 459, 856, 993
SfaNI	GCATC	2 cut(s)	940, 988
SfcI	CTRYAG	3 cut(s)	639, 954, 1072
SinI	GGWCC	3 cut(s)	143, 338, 841
SmiMI	CAYNNNNRTG	2 cut(s)	393, 437
Sse9I	AATT	7 cut(s)	106, 286, 522, 553, 756, 827, 833
SseBI	AGGCCT	1 cut(s)	1070
SsiI	CCGC	1 cut(s)	477
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	1044
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	1070
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	18, 182, 493, 858
TaqI	TCGA	4 cut(s)	69, 296, 732, 913
TasI	AATT	7 cut(s)	106, 286, 522, 553, 756, 827, 833
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	293, 482, 644
Tru1I	TTAA	2 cut(s)	900, 939
Tru9I	TTAA	2 cut(s)	900, 939
TscAI	CASTG	4 cut(s)	388, 861, 871, 1000
TseFI	GTSAC	2 cut(s)	569, 795
TseI	GCWGC	3 cut(s)	953, 1022, 1025
Tsp45I	GTSAC	2 cut(s)	569, 795
TspDTI	ATGAA	5 cut(s)	176, 297, 318, 681, 777
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	4 cut(s)	388, 861, 871, 1000
Tth111I	GACNNNGTC	1 cut(s)	918
VpaK11BI	GGWCC	3 cut(s)	143, 338, 841
XapI	RAATTY	3 cut(s)	106, 286, 522
XceI	RCATGY	2 cut(s)	319, 407
XmiI	GTMKAC	1 cut(s)	1048
XspI	CTAG	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.