Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 178 - 219 | 3e-08 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 561 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 188, 529 |
| AatII | GACGTC | 1 cut(s) | 527 |
| AccB1I | GGYRCC | 1 cut(s) | 82 |
| AccI | GTMKAC | 2 cut(s) | 948, 1063 |
| AciI | CCGC | 1 cut(s) | 80 |
| AclWI | GGATC | 3 cut(s) | 146, 653, 713 |
| AcsI | RAATTY | 2 cut(s) | 152, 581 |
| AcuI | CTGAAG | 1 cut(s) | 1137 |
| AcvI | CACGTG | 1 cut(s) | 61 |
| AcyI | GRCGYC | 2 cut(s) | 483, 524 |
| AfaI | GTAC | 3 cut(s) | 71, 251, 888 |
| AflIII | ACRYGT | 1 cut(s) | 60 |
| AgeI | ACCGGT | 1 cut(s) | 183 |
| AgsI | TTSAA | 5 cut(s) | 34, 314, 415, 988, 1144 |
| AjnI | CCWGG | 1 cut(s) | 1091 |
| AluBI | AGCT | 7 cut(s) | 24, 103, 244, 272, 662, 668, 785 |
| AluI | AGCT | 7 cut(s) | 24, 103, 244, 272, 662, 668, 785 |
| Alw21I | GWGCWC | 2 cut(s) | 246, 274 |
| Alw26I | GTCTC | 1 cut(s) | 907 |
| AlwI | GGATC | 3 cut(s) | 146, 653, 713 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 785 |
| AoxI | GGCC | 2 cut(s) | 159, 199 |
| ApeKI | GCWGC | 5 cut(s) | 659, 662, 665, 668, 758 |
| ApoI | RAATTY | 2 cut(s) | 152, 581 |
| AsiGI | ACCGGT | 1 cut(s) | 183 |
| AspLEI | GCGC | 1 cut(s) | 867 |
| AspS9I | GGNCC | 1 cut(s) | 190 |
| AvaII | GGWCC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 82 |
| BanII | GRGCYC | 2 cut(s) | 246, 274 |
| BbrPI | CACGTG | 1 cut(s) | 61 |
| BbsI | GAAGAC | 1 cut(s) | 995 |
| Bbv12I | GWGCWC | 2 cut(s) | 246, 274 |
| BbvI | GCAGC | 5 cut(s) | 649, 655, 671, 677, 770 |
| BccI | CCATC | 3 cut(s) | 344, 1142, 1164 |
| BceAI | ACGGC | 1 cut(s) | 93 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 335, 369 |
| BciT130I | CCWGG | 1 cut(s) | 1093 |
| BcoDI | GTCTC | 1 cut(s) | 907 |
| BfaI | CTAG | 1 cut(s) | 890 |
| BfmI | CTRYAG | 4 cut(s) | 207, 262, 517, 663 |
| BfoI | RGCGCY | 1 cut(s) | 868 |
| BglII | AGATCT | 2 cut(s) | 815, 1017 |
| BisI | GCNGC | 6 cut(s) | 81, 660, 663, 666, 669, 759 |
| BlsI | GCNGC | 6 cut(s) | 82, 661, 664, 667, 670, 760 |
| BmcAI | AGTACT | 1 cut(s) | 888 |
| Bme1390I | CCNGG | 1 cut(s) | 1093 |
| Bme18I | GGWCC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 1 cut(s) | 190 |
| BmiI | GGNNCC | 3 cut(s) | 84, 191, 1154 |
| BmrFI | CCNGG | 1 cut(s) | 1093 |
| BmsI | GCATC | 1 cut(s) | 627 |
| BpiI | GAAGAC | 1 cut(s) | 995 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 207, 239 |
| Bpu10I | CCTNAGC | 2 cut(s) | 245, 809 |
| BpuEI | CTTGAG | 2 cut(s) | 296, 665 |
| BsaAI | YACGTR | 1 cut(s) | 61 |
| BsaHI | GRCGYC | 2 cut(s) | 483, 524 |
| BsaWI | WCCGGW | 2 cut(s) | 183, 566 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 233, 263 |
| Bse118I | RCCGGY | 1 cut(s) | 183 |
| Bse1I | ACTGG | 2 cut(s) | 743, 748 |
| Bse3DI | GCAATG | 1 cut(s) | 810 |
| BseBI | CCWGG | 1 cut(s) | 1093 |
| BseGI | GGATG | 3 cut(s) | 297, 336, 1153 |
| BseMI | GCAATG | 1 cut(s) | 810 |
| BseMII | CTCAG | 5 cut(s) | 259, 372, 667, 810, 1029 |
| BseNI | ACTGG | 2 cut(s) | 743, 748 |
| BseRI | GAGGAG | 1 cut(s) | 431 |
| BseXI | GCAGC | 5 cut(s) | 649, 655, 671, 677, 770 |
| BsgI | GTGCAG | 1 cut(s) | 678 |
| Bsh1285I | CGRYCG | 1 cut(s) | 184 |
| BshFI | GGCC | 2 cut(s) | 161, 201 |
| BshNI | GGYRCC | 1 cut(s) | 82 |
| BshTI | ACCGGT | 1 cut(s) | 183 |
| BsiEI | CGRYCG | 1 cut(s) | 184 |
| BsiHKAI | GWGCWC | 2 cut(s) | 246, 274 |
| BsiSI | CCGG | 3 cut(s) | 184, 340, 567 |
| BsmAI | GTCTC | 1 cut(s) | 907 |
| BsnI | GGCC | 2 cut(s) | 161, 201 |
| Bsp1286I | GDGCHC | 2 cut(s) | 246, 274 |
| Bsp143I | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| BspACI | CCGC | 1 cut(s) | 80 |
| BspANI | GGCC | 2 cut(s) | 161, 201 |
| BspCNI | CTCAG | 5 cut(s) | 258, 373, 666, 811, 1030 |
| BspLI | GGNNCC | 3 cut(s) | 84, 191, 1154 |
| BspMAI | CTGCAG | 2 cut(s) | 521, 667 |
| BspPI | GGATC | 3 cut(s) | 146, 653, 713 |
| BspT107I | GGYRCC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 1 cut(s) | 810 |
| BsrFI | RCCGGY | 1 cut(s) | 183 |
| BsrI | ACTGG | 2 cut(s) | 743, 748 |
| BssAI | RCCGGY | 1 cut(s) | 183 |
| BssMI | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| BssNAI | GTATAC | 2 cut(s) | 949, 1064 |
| BssNI | GRCGYC | 2 cut(s) | 483, 524 |
| Bst1107I | GTATAC | 2 cut(s) | 949, 1064 |
| Bst2UI | CCWGG | 1 cut(s) | 1093 |
| Bst4CI | ACNGT | 2 cut(s) | 134, 208 |
| Bst6I | CTCTTC | 2 cut(s) | 603, 1020 |
| BstACI | GRCGYC | 2 cut(s) | 483, 524 |
| BstBAI | YACGTR | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 2 cut(s) | 855, 1044 |
| BstDEI | CTNAG | 7 cut(s) | 245, 381, 653, 723, 809, 819, 1038 |
| BstF5I | GGATG | 3 cut(s) | 297, 336, 1153 |
| BstH2I | RGCGCY | 1 cut(s) | 868 |
| BstHHI | GCGC | 1 cut(s) | 867 |
| BstKTI | GATC | 6 cut(s) | 141, 648, 679, 721, 818, 1020 |
| BstMAI | GTCTC | 1 cut(s) | 907 |
| BstMBI | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| BstMCI | CGRYCG | 1 cut(s) | 184 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 665, 668, 758 |
| BstNI | CCWGG | 1 cut(s) | 1093 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSCI | CCNGG | 1 cut(s) | 1091 |
| BstSFI | CTRYAG | 4 cut(s) | 207, 262, 517, 663 |
| BstV1I | GCAGC | 5 cut(s) | 649, 655, 671, 677, 770 |
| BstV2I | GAAGAC | 1 cut(s) | 995 |
| BstX2I | RGATCY | 2 cut(s) | 815, 1017 |
| BstYI | RGATCY | 2 cut(s) | 815, 1017 |
| BstZ17I | GTATAC | 2 cut(s) | 949, 1064 |
| BsuRI | GGCC | 2 cut(s) | 161, 201 |
| BtsCI | GGATG | 3 cut(s) | 297, 336, 1153 |
| BtsIMutI | CAGTG | 1 cut(s) | 661 |
| Cac8I | GCNNGC | 2 cut(s) | 855, 1044 |
| CaiI | CAGNNNCTG | 1 cut(s) | 785 |
| CfoI | GCGC | 1 cut(s) | 867 |
| Cfr10I | RCCGGY | 1 cut(s) | 183 |
| Cfr13I | GGNCC | 1 cut(s) | 190 |
| CseI | GACGC | 2 cut(s) | 491, 883 |
| Csp6I | GTAC | 3 cut(s) | 70, 250, 887 |
| CspAI | ACCGGT | 1 cut(s) | 183 |
| CviAII | CATG | 7 cut(s) | 349, 365, 377, 458, 490, 528, 575 |
| CviQI | GTAC | 3 cut(s) | 70, 250, 887 |
| DdeI | CTNAG | 7 cut(s) | 245, 381, 653, 723, 809, 819, 1038 |
| DpnI | GATC | 6 cut(s) | 140, 647, 678, 720, 817, 1019 |
| DpnII | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 188, 529 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 188, 529 |
| Eam1104I | CTCTTC | 2 cut(s) | 603, 1020 |
| EarI | CTCTTC | 2 cut(s) | 603, 1020 |
| Ecl136II | GAGCTC | 2 cut(s) | 244, 272 |
| Eco147I | AGGCCT | 1 cut(s) | 161 |
| Eco24I | GRGCYC | 2 cut(s) | 246, 274 |
| Eco47I | GGWCC | 1 cut(s) | 190 |
| Eco53kI | GAGCTC | 2 cut(s) | 244, 272 |
| Eco57I | CTGAAG | 1 cut(s) | 1137 |
| Eco72I | CACGTG | 1 cut(s) | 61 |
| EcoICRI | GAGCTC | 2 cut(s) | 244, 272 |
| EcoRII | CCWGG | 1 cut(s) | 1091 |
| EcoT38I | GRGCYC | 2 cut(s) | 246, 274 |
| FaeI | CATG | 7 cut(s) | 352, 368, 380, 461, 493, 531, 578 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1089, 1121 |
| FatI | CATG | 7 cut(s) | 348, 364, 376, 457, 489, 527, 574 |
| FauNDI | CATATG | 2 cut(s) | 640, 859 |
| FblI | GTMKAC | 2 cut(s) | 948, 1063 |
| Fnu4HI | GCNGC | 6 cut(s) | 81, 660, 663, 666, 669, 759 |
| FokI | GGATG | 3 cut(s) | 304, 323, 1160 |
| FriOI | GRGCYC | 2 cut(s) | 246, 274 |
| Fsp4HI | GCNGC | 6 cut(s) | 81, 660, 663, 666, 669, 759 |
| FspBI | CTAG | 1 cut(s) | 890 |
| GlaI | GCGC | 1 cut(s) | 866 |
| GluI | GCNGC | 6 cut(s) | 81, 660, 663, 666, 669, 759 |
| HaeII | RGCGCY | 1 cut(s) | 868 |
| HaeIII | GGCC | 2 cut(s) | 161, 201 |
| HapII | CCGG | 3 cut(s) | 184, 340, 567 |
| HgaI | GACGC | 2 cut(s) | 491, 883 |
| HhaI | GCGC | 1 cut(s) | 867 |
| Hin1I | GRCGYC | 2 cut(s) | 483, 524 |
| Hin1II | CATG | 7 cut(s) | 352, 368, 380, 461, 493, 531, 578 |
| Hin6I | GCGC | 1 cut(s) | 865 |
| HinP1I | GCGC | 1 cut(s) | 865 |
| HinfI | GANTC | 8 cut(s) | 113, 175, 633, 651, 697, 713, 727, 1034 |
| HpaII | CCGG | 3 cut(s) | 184, 340, 567 |
| Hpy166II | GTNNAC | 5 cut(s) | 430, 736, 790, 949, 1064 |
| Hpy188I | TCNGA | 9 cut(s) | 99, 138, 328, 594, 650, 676, 718, 820, 1039 |
| Hpy188III | TCNNGA | 6 cut(s) | 106, 179, 275, 404, 985, 1106 |
| Hpy8I | GTNNAC | 5 cut(s) | 430, 736, 790, 949, 1064 |
| Hpy99I | CGWCG | 1 cut(s) | 138 |
| HpyAV | CCTTC | 3 cut(s) | 103, 191, 1138 |
| HpyCH4III | ACNGT | 2 cut(s) | 134, 208 |
| HpyCH4IV | ACGT | 3 cut(s) | 60, 330, 524 |
| HpyCH4V | TGCA | 8 cut(s) | 356, 461, 493, 519, 659, 665, 758, 884 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 665, 668, 758 |
| HpyF3I | CTNAG | 7 cut(s) | 245, 381, 653, 723, 809, 819, 1038 |
| HpySE526I | ACGT | 3 cut(s) | 60, 330, 524 |
| Hsp92I | GRCGYC | 2 cut(s) | 483, 524 |
| Hsp92II | CATG | 7 cut(s) | 352, 368, 380, 461, 493, 531, 578 |
| HspAI | GCGC | 1 cut(s) | 865 |
| Kzo9I | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| LmnI | GCTCC | 5 cut(s) | 29, 147, 241, 782, 934 |
| Lsp1109I | GCAGC | 5 cut(s) | 649, 655, 671, 677, 770 |
| LweI | GCATC | 1 cut(s) | 627 |
| MaeI | CTAG | 1 cut(s) | 890 |
| MaeII | ACGT | 3 cut(s) | 60, 330, 524 |
| MaeIII | GTNAC | 4 cut(s) | 56, 226, 296, 926 |
| MalI | GATC | 6 cut(s) | 140, 647, 678, 720, 817, 1019 |
| MboI | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| MboII | GAAGA | 5 cut(s) | 508, 620, 907, 1000, 1037 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 2 cut(s) | 815, 1017 |
| MhlI | GDGCHC | 2 cut(s) | 246, 274 |
| MluCI | AATT | 5 cut(s) | 152, 410, 550, 581, 687 |
| MlyI | GAGTC | 3 cut(s) | 107, 645, 736 |
| MmeI | TCCRAC | 2 cut(s) | 116, 450 |
| MseI | TTAA | 2 cut(s) | 156, 393 |
| MspA1I | CMGCKG | 2 cut(s) | 662, 668 |
| MspI | CCGG | 3 cut(s) | 184, 340, 567 |
| MspR9I | CCNGG | 1 cut(s) | 1093 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MvaI | CCWGG | 1 cut(s) | 1093 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 665, 668, 758 |
| NdeI | CATATG | 2 cut(s) | 640, 859 |
| NdeII | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| NlaIII | CATG | 7 cut(s) | 352, 368, 380, 461, 493, 531, 578 |
| NlaIV | GGNNCC | 3 cut(s) | 84, 191, 1154 |
| NmuCI | GTSAC | 3 cut(s) | 56, 226, 296 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PceI | AGGCCT | 1 cut(s) | 161 |
| PfeI | GAWTC | 5 cut(s) | 175, 633, 697, 713, 1034 |
| PflFI | GACNNNGTC | 1 cut(s) | 224 |
| PinAI | ACCGGT | 1 cut(s) | 183 |
| PkrI | GCNGC | 6 cut(s) | 82, 661, 664, 667, 670, 760 |
| PleI | GAGTC | 3 cut(s) | 107, 645, 735 |
| PmaCI | CACGTG | 1 cut(s) | 61 |
| PmlI | CACGTG | 1 cut(s) | 61 |
| PpsI | GAGTC | 3 cut(s) | 107, 645, 735 |
| Ppu21I | YACGTR | 1 cut(s) | 61 |
| PsiI | TTATAA | 1 cut(s) | 561 |
| Psp124BI | GAGCTC | 2 cut(s) | 246, 274 |
| Psp6I | CCWGG | 1 cut(s) | 1091 |
| PspCI | CACGTG | 1 cut(s) | 61 |
| PspGI | CCWGG | 1 cut(s) | 1091 |
| PspN4I | GGNNCC | 3 cut(s) | 84, 191, 1154 |
| PspPI | GGNCC | 1 cut(s) | 190 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 113, 145 |
| PstI | CTGCAG | 2 cut(s) | 521, 667 |
| PstNI | CAGNNNCTG | 1 cut(s) | 785 |
| PsuI | RGATCY | 2 cut(s) | 815, 1017 |
| PsyI | GACNNNGTC | 1 cut(s) | 224 |
| PvuII | CAGCTG | 2 cut(s) | 662, 668 |
| RsaI | GTAC | 3 cut(s) | 71, 251, 888 |
| RsaNI | GTAC | 3 cut(s) | 70, 250, 887 |
| SacI | GAGCTC | 2 cut(s) | 246, 274 |
| SaqAI | TTAA | 2 cut(s) | 156, 393 |
| SatI | GCNGC | 6 cut(s) | 81, 660, 663, 666, 669, 759 |
| Sau3AI | GATC | 6 cut(s) | 138, 645, 676, 718, 815, 1017 |
| Sau96I | GGNCC | 1 cut(s) | 190 |
| ScaI | AGTACT | 1 cut(s) | 888 |
| SchI | GAGTC | 3 cut(s) | 107, 645, 736 |
| ScrFI | CCNGG | 1 cut(s) | 1093 |
| SduI | GDGCHC | 2 cut(s) | 246, 274 |
| SfaNI | GCATC | 1 cut(s) | 627 |
| SfcI | CTRYAG | 4 cut(s) | 207, 262, 517, 663 |
| SinI | GGWCC | 1 cut(s) | 190 |
| SmlI | CTYRAG | 2 cut(s) | 275, 680 |
| SmoI | CTYRAG | 2 cut(s) | 275, 680 |
| Sse9I | AATT | 5 cut(s) | 152, 410, 550, 581, 687 |
| SseBI | AGGCCT | 1 cut(s) | 161 |
| SsiI | CCGC | 1 cut(s) | 80 |
| SspMI | CTAG | 1 cut(s) | 890 |
| SstI | GAGCTC | 2 cut(s) | 246, 274 |
| StuI | AGGCCT | 1 cut(s) | 161 |
| StyD4I | CCNGG | 1 cut(s) | 1091 |
| TaaI | ACNGT | 2 cut(s) | 134, 208 |
| TaiI | ACGT | 3 cut(s) | 63, 333, 527 |
| TaqI | TCGA | 2 cut(s) | 180, 345 |
| TasI | AATT | 5 cut(s) | 152, 410, 550, 581, 687 |
| TatI | WGTACW | 2 cut(s) | 69, 886 |
| TauI | GCSGC | 1 cut(s) | 83 |
| TfiI | GAWTC | 5 cut(s) | 175, 633, 697, 713, 1034 |
| Tru1I | TTAA | 2 cut(s) | 156, 393 |
| Tru9I | TTAA | 2 cut(s) | 156, 393 |
| TscAI | CASTG | 1 cut(s) | 661 |
| TseFI | GTSAC | 3 cut(s) | 56, 226, 296 |
| TseI | GCWGC | 5 cut(s) | 659, 662, 665, 668, 758 |
| Tsp45I | GTSAC | 3 cut(s) | 56, 226, 296 |
| TspDTI | ATGAA | 4 cut(s) | 20, 353, 956, 1038 |
| TspGWI | ACGGA | 1 cut(s) | 154 |
| TspRI | CASTG | 1 cut(s) | 661 |
| Tth111I | GACNNNGTC | 1 cut(s) | 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 190 |
| XapI | RAATTY | 2 cut(s) | 152, 581 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XmiI | GTMKAC | 2 cut(s) | 948, 1063 |
| XspI | CTAG | 1 cut(s) | 890 |
| ZraI | GACGTC | 1 cut(s) | 525 |
| ZrmI | AGTACT | 1 cut(s) | 888 |