Rroxscaffold_6G00403660

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000378
Physical Location & Seq
Forward (+)
26126854 .. 26130022
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403660.1

Sequence Viewer

Length: 1539 bp
ATGAAGCCTTCTCGCTGGAGCCCCCTATTCAATTTCTACTCTCGTTTACCGGGCGTTTCGCTCTACTCAACGACGGCCAAATCGCCGCCGTCCACGTCTCACAGAACCCACTGGAAAGGCACACTCAACCGCCTCTACGGTCGGATTTCGAAGATCGCAGATCCTAAGGCCCCCATTCACCCGATTCTCGACCAGTGGATTCAACAAGGCGGACCCGTCGATAAAGTCGGCCTCGTCTTTATGATTAAGGAGCTCAAGCACTTTAAACGCTTCGACAACGCTCTTCAGGTATCAATGTGGATGACTGACAAAAGGTACTATGAACTTTCTCCCGCCGACGCAGCGGTTCGGCTGGACTTGATTGCAAAAGTTCATGGAGTGGAACAAGCTGAGAGTTATTTTGACAACATTCCCATACAATTGAAATCGCTTGGGGTTTACTTGGCTCTGCTTAACTGCTATGCCCATGCAAAGCTTGTTGAGAAAGCGGAGGCCACAATGCAGAAGATTAGGGATTTGGGGCTCGCTAGGACGTCGTTGGCTTACAACAATTTGCTCAATTTGTATTATCAGACTGGAAAGCGTGATAAGCTTGACGCGCTGGTGAATGAAATGGAGGAGAAGCACATCCTGTGTAACAAATTCACATATGGGATCCTGCTCAGTGCATATGCTGCTGCTTCTGACTTTGAGGCAGTTGAGAAGATTCTTGCACAATGGGAATCACATCCTGATTGTCGTTTGGATTGGATTAACTATGCGGTTGTGGCAAATGTTTATATAAAAGCAGGAAATGAGGACAAGGCTTTGGCAATGCTAAAGAAGTCTGAGGAGCTGATACCAAGTTCTGAAAGACGGAGGGAAGCATACGAGCACCTTGTGCCACAATATGCAGCACTAGGGAAGAAAGATGATGTTGTGAGACTATGGGAACTTTACAAGGGTCAGATGAAAGTATACAATAAAGGTTATAGAATCATGATAACCTCACTCTTGAAGATTGGTGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAATCAGTTTATGATGTTCGTATCCCAAATCACTTGATTGCTGCTTATGCCAGAAAAGGTCTTCTTGACAAGGCTGAAGCTATTATTGAAAGGGTTATAGTGAAGGGTGCGAAACCTGATGCAAAGTCATGGTATTCTTTGGCAAAAGTGCATCTTGATCATGATCAAACTGAGAAGGCAGTTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACAAGGATGTTTGGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGTGCCAAGGAGTATATAAAGCTGCTCACTGATAAGAATGTTATCACCGTGATTACACAGGAGAGACTGTTGAATAAGATACATAAGGCGGATTCAAACTCTGTAACACCAGGCGAAATGGAAGGGGATGGTCGAAATGGAGATGAAGAAGCAAGTGAAGTTTCAGAAGTGGAGGGAGTCGTAGCTGCTAGCATCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

512

Amino Acids

58.06

Weight (kDa)

8.48

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 179 - 225 3.9e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 1340
AccI GTMKAC 1 cut(s) 957
AccII CGCG 1 cut(s) 599
AciI CCGC 8 cut(s) 86, 130, 210, 333, 344, 488, 761, 1427
AclWI GGATC 4 cut(s) 155, 649, 662, 1325
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 641
AcuI CTGAAG 2 cut(s) 269, 1146
AcyI GRCGYC 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 880
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 8 cut(s) 31, 203, 424, 997, 1034, 1139, 1411, 1434
AjiI CACGTC 1 cut(s) 96
AjnI CCWGG 2 cut(s) 1267, 1447
AluBI AGCT 8 cut(s) 253, 389, 475, 592, 835, 1130, 1360, 1523
AluI AGCT 8 cut(s) 253, 389, 475, 592, 835, 1130, 1360, 1523
Alw21I GWGCWC 2 cut(s) 255, 876
Alw26I GTCTC 4 cut(s) 102, 916, 1310, 1396
AlwI GGATC 4 cut(s) 155, 649, 662, 1325
AoxI GGCC 4 cut(s) 75, 168, 229, 492
ApeKI GCWGC 9 cut(s) 341, 674, 677, 893, 1091, 1264, 1298, 1360, 1523
ApoI RAATTY 1 cut(s) 641
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 2 cut(s) 169, 212
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 170, 616, 1016, 1375
AsuII TTCGAA 1 cut(s) 149
AsuNHI GCTAGC 1 cut(s) 1526
AvaII GGWCC 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 165
BamHI GGATCC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 1340
BanII GRGCYC 3 cut(s) 23, 255, 525
BbsI GAAGAC 2 cut(s) 1103, 1283
Bbv12I GWGCWC 2 cut(s) 255, 876
BbvI GCAGC 9 cut(s) 353, 661, 664, 905, 1078, 1276, 1285, 1347, 1510
BccI CCATC 1 cut(s) 1460
BceAI ACGGC 2 cut(s) 73, 90
BciT130I CCWGG 2 cut(s) 1269, 1449
BciVI GTATCC 1 cut(s) 1082
BclI TGATCA 2 cut(s) 1207, 1213
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 4 cut(s) 102, 916, 1310, 1396
BfaI CTAG 3 cut(s) 528, 899, 1527
BfuI GTATCC 1 cut(s) 1082
BglII AGATCT 1 cut(s) 1026
Bme1390I CCNGG 3 cut(s) 51, 1269, 1449
Bme18I GGWCC 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 169, 212
BmiI GGNNCC 5 cut(s) 20, 171, 214, 656, 1342
BmrFI CCNGG 3 cut(s) 51, 1269, 1449
BmsI GCATC 2 cut(s) 1159, 1210
BmtI GCTAGC 1 cut(s) 1530
BpiI GAAGAC 2 cut(s) 1103, 1283
BpmI CTGGAG 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 1212
BsaHI GRCGYC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 1344
BsaXI ACNNNNNCTCC 2 cut(s) 1391, 1421
Bse1I ACTGG 3 cut(s) 116, 193, 580
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 1212
BseBI CCWGG 2 cut(s) 1269, 1449
BseDI CCNNGG 1 cut(s) 1344
BseGI GGATG 6 cut(s) 306, 627, 727, 1294, 1471, 1530
BseJI GATNNNNATC 1 cut(s) 1212
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 5 cut(s) 381, 676, 819, 1061, 1212
BseNI ACTGG 3 cut(s) 116, 193, 580
BseRI GAGGAG 2 cut(s) 632, 845
BseXI GCAGC 9 cut(s) 353, 661, 664, 905, 1078, 1276, 1285, 1347, 1510
BsgI GTGCAG 1 cut(s) 1283
Bsh1236I CGCG 1 cut(s) 599
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 77, 170, 231, 494
BshNI GGYRCC 1 cut(s) 1340
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 255, 876
BsiSI CCGG 1 cut(s) 50
BsmAI GTCTC 4 cut(s) 102, 916, 1310, 1396
BsmBI CGTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 77, 170, 231, 494
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 4 cut(s) 23, 255, 525, 876
Bsp143I GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
BspACI CCGC 8 cut(s) 86, 130, 210, 333, 344, 488, 761, 1427
BspANI GGCC 4 cut(s) 77, 170, 231, 494
BspCNI CTCAG 5 cut(s) 382, 675, 820, 1060, 1213
BspFNI CGCG 1 cut(s) 599
BspHI TCATGA 2 cut(s) 978, 1210
BspLI GGNNCC 5 cut(s) 20, 171, 214, 656, 1342
BspOI GCTAGC 1 cut(s) 1530
BspPI GGATC 4 cut(s) 155, 649, 662, 1325
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 1340
BsrDI GCAATG 1 cut(s) 819
BsrI ACTGG 3 cut(s) 116, 193, 580
BssECI CCNNGG 1 cut(s) 1344
BssMI GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
BssNAI GTATAC 1 cut(s) 958
BssNI GRCGYC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 1344
Bst1107I GTATAC 1 cut(s) 958
Bst2UI CCWGG 2 cut(s) 1269, 1449
Bst4CI ACNGT 4 cut(s) 140, 1010, 1387, 1407
Bst6I CTCTTC 2 cut(s) 288, 1029
BstACI GRCGYC 1 cut(s) 533
BstAPI GCANNNNNTGC 2 cut(s) 674, 880
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 525, 1528
BstDEI CTNAG 6 cut(s) 165, 390, 662, 828, 1047, 1221
BstF5I GGATG 6 cut(s) 306, 627, 727, 1294, 1471, 1530
BstFNI CGCG 1 cut(s) 599
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 7 cut(s) 156, 163, 657, 1029, 1210, 1216, 1333
BstMAI GTCTC 4 cut(s) 102, 916, 1310, 1396
BstMBI GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 8 cut(s) 341, 589, 598, 674, 767, 880, 1097, 1256
BstNI CCWGG 2 cut(s) 1269, 1449
BstSCI CCNGG 3 cut(s) 49, 1267, 1447
BstUI CGCG 1 cut(s) 599
BstV1I GCAGC 9 cut(s) 353, 661, 664, 905, 1078, 1276, 1285, 1347, 1510
BstV2I GAAGAC 2 cut(s) 1103, 1283
BstX2I RGATCY 3 cut(s) 160, 654, 1026
BstYI RGATCY 3 cut(s) 160, 654, 1026
BstZ17I GTATAC 1 cut(s) 958
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 1082
BsuRI GGCC 4 cut(s) 77, 170, 231, 494
BtrI CACGTC 1 cut(s) 96
BtsCI GGATG 6 cut(s) 306, 627, 727, 1294, 1471, 1530
BtsIMutI CAGTG 5 cut(s) 109, 200, 670, 1015, 1365
Cac8I GCNNGC 2 cut(s) 525, 1528
CciI TCATGA 2 cut(s) 978, 1210
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 2 cut(s) 169, 212
CseI GACGC 2 cut(s) 347, 605
Csp6I GTAC 1 cut(s) 316
CviAII CATG 5 cut(s) 374, 467, 979, 1179, 1211
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 6 cut(s) 165, 390, 662, 828, 1047, 1221
DpnI GATC 7 cut(s) 155, 162, 656, 1028, 1209, 1215, 1332
DpnII GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
DraI TTTAAA 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 288, 1029
EarI CTCTTC 2 cut(s) 288, 1029
EciI GGCGGA 2 cut(s) 225, 1442
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 1344
Eco24I GRGCYC 3 cut(s) 23, 255, 525
Eco47I GGWCC 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 269, 1146
Eco81I CCTNAGG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 1267, 1447
EcoT14I CCWWGG 1 cut(s) 1344
EcoT38I GRGCYC 3 cut(s) 23, 255, 525
ErhI CCWWGG 1 cut(s) 1344
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 5 cut(s) 377, 470, 982, 1182, 1214
FalI AAGNNNNNCTT 4 cut(s) 1098, 1130, 1188, 1220
FatI CATG 5 cut(s) 373, 466, 978, 1178, 1210
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 2 cut(s) 649, 670
FbaI TGATCA 2 cut(s) 1207, 1213
FblI GTMKAC 1 cut(s) 957
FokI GGATG 6 cut(s) 313, 614, 714, 1301, 1478, 1517
FriOI GRGCYC 3 cut(s) 23, 255, 525
FspBI CTAG 3 cut(s) 528, 899, 1527
GlaI GCGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 37
HaeIII GGCC 4 cut(s) 77, 170, 231, 494
HapII CCGG 1 cut(s) 50
HgaI GACGC 2 cut(s) 347, 605
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 1 cut(s) 533
Hin1II CATG 5 cut(s) 377, 470, 982, 1182, 1214
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 1 cut(s) 1239
HindII GTYRAC 1 cut(s) 1239
HindIII AAGCTT 2 cut(s) 473, 590
HinfI GANTC 8 cut(s) 184, 199, 706, 722, 975, 1043, 1430, 1515
HpaII CCGG 1 cut(s) 50
HphI GGTGA 4 cut(s) 170, 616, 1016, 1375
Hpy166II GTNNAC 5 cut(s) 47, 93, 439, 958, 1239
Hpy188I TCNGA 7 cut(s) 144, 573, 685, 829, 850, 948, 1504
Hpy188III TCNNGA 8 cut(s) 188, 731, 979, 994, 1115, 1205, 1211, 1334
Hpy8I GTNNAC 5 cut(s) 47, 93, 439, 958, 1239
Hpy99I CGWCG 4 cut(s) 76, 221, 341, 538
HpyAV CCTTC 4 cut(s) 18, 1147, 1219, 1454
HpyCH4III ACNGT 4 cut(s) 140, 1010, 1387, 1407
HpyCH4IV ACGT 2 cut(s) 95, 533
HpyCH4V TGCA 9 cut(s) 365, 470, 502, 668, 713, 893, 1172, 1201, 1264
HpyF10VI GCNNNNNNNGC 8 cut(s) 341, 589, 598, 674, 767, 880, 1097, 1256
HpyF3I CTNAG 6 cut(s) 165, 390, 662, 828, 1047, 1221
HpySE526I ACGT 2 cut(s) 95, 533
Hsp92I GRCGYC 1 cut(s) 533
Hsp92II CATG 5 cut(s) 377, 470, 982, 1182, 1214
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 2 cut(s) 1207, 1213
Kzo9I GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 3 cut(s) 18, 250, 832
Lsp1109I GCAGC 9 cut(s) 353, 661, 664, 905, 1078, 1276, 1285, 1347, 1510
LweI GCATC 2 cut(s) 1159, 1210
MaeI CTAG 3 cut(s) 528, 899, 1527
MaeII ACGT 2 cut(s) 95, 533
MaeIII GTNAC 3 cut(s) 635, 1004, 1441
MalI GATC 7 cut(s) 155, 162, 656, 1028, 1209, 1215, 1332
MboI GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 3 cut(s) 160, 654, 1026
MhlI GDGCHC 4 cut(s) 23, 255, 525, 876
MluCI AATT 5 cut(s) 31, 419, 550, 559, 641
MlyI GAGTC 1 cut(s) 1524
MmeI TCCRAC 2 cut(s) 122, 1253
MseI TTAA 4 cut(s) 246, 264, 453, 753
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 3 cut(s) 51, 1269, 1449
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 2 cut(s) 1269, 1449
MvnI CGCG 1 cut(s) 599
MwoI GCNNNNNNNGC 8 cut(s) 341, 589, 598, 674, 767, 880, 1097, 1256
NciI CCSGG 1 cut(s) 51
NdeI CATATG 2 cut(s) 649, 670
NdeII GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
NheI GCTAGC 1 cut(s) 1526
NlaIII CATG 5 cut(s) 377, 470, 982, 1182, 1214
NlaIV GGNNCC 5 cut(s) 20, 171, 214, 656, 1342
NmeAIII GCCGAG 1 cut(s) 1045
NmuCI GTSAC 1 cut(s) 1004
NspV TTCGAA 1 cut(s) 149
PagI TCATGA 2 cut(s) 978, 1210
PciSI GCTCTTC 1 cut(s) 288
PfeI GAWTC 7 cut(s) 184, 199, 706, 722, 975, 1043, 1430
PleI GAGTC 1 cut(s) 1523
PpsI GAGTC 1 cut(s) 1523
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 1267, 1447
PspGI CCWGG 2 cut(s) 1267, 1447
PspN4I GGNNCC 5 cut(s) 20, 171, 214, 656, 1342
PspPI GGNCC 2 cut(s) 169, 212
PsuI RGATCY 3 cut(s) 160, 654, 1026
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 4 cut(s) 246, 264, 453, 753
Sau3AI GATC 7 cut(s) 153, 160, 654, 1026, 1207, 1213, 1330
Sau96I GGNCC 2 cut(s) 169, 212
SchI GAGTC 1 cut(s) 1524
ScrFI CCNGG 3 cut(s) 51, 1269, 1449
SduI GDGCHC 4 cut(s) 23, 255, 525, 876
SfaNI GCATC 2 cut(s) 1159, 1210
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 5 cut(s) 31, 419, 550, 559, 641
SsiI CCGC 8 cut(s) 86, 130, 210, 333, 344, 488, 761, 1427
SspMI CTAG 3 cut(s) 528, 899, 1527
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 49, 1267, 1447
StyI CCWWGG 1 cut(s) 1344
TaaI ACNGT 4 cut(s) 140, 1010, 1387, 1407
TaiI ACGT 2 cut(s) 98, 536
TaqI TCGA 5 cut(s) 149, 189, 219, 273, 1471
TasI AATT 5 cut(s) 31, 419, 550, 559, 641
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 7 cut(s) 184, 199, 706, 722, 975, 1043, 1430
Tru1I TTAA 4 cut(s) 246, 264, 453, 753
Tru9I TTAA 4 cut(s) 246, 264, 453, 753
TscAI CASTG 5 cut(s) 116, 200, 670, 1015, 1372
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 9 cut(s) 341, 674, 677, 893, 1091, 1264, 1298, 1360, 1523
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 6 cut(s) 17, 336, 362, 624, 965, 1497
TspGWI ACGGA 1 cut(s) 871
TspRI CASTG 5 cut(s) 116, 200, 670, 1015, 1372
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 3 cut(s) 528, 899, 1527
ZraI GACGTC 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.