Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

3648639 .. 3649360

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1022200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGCTTCTCCGTTCAAATCCATGCCGTGGCACTGCCATTTCTAGGGTTTTTGGTTCCCTGAACTACTCAACCAATACTCTGGCCTCCTCCTCCACCACATCTCCCACATTTCAGTCTCTGCACCATAGGATTCTGTTCTATAAAGGCCCGAGGGTTTCCGTTCTCCCTGTACTCCATCAATGGCTGAAAGAAGGGAGAGACGTGGAGCAGTCAGAGCTCCGAGATTTCATCATTAAACTCCGTCGGTCCCGCTGCTACAACCTCGCCCTGGAGATCTCAGAGTGGATGGGCGACGAAATGAATTTCGATTTGCACCCTGGAGACATTGCGATTCGGCTGGATTTGATCTCGAGAGTCCACGGAAACAAACGAGCTGAGAGGTATTTCGATTGCATTCCCAATGAATTAAGTGTATGTTTCTCTCTTGTTATCCTATGTAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

150

Amino Acids

17.16

Weight (kDa)

9.14

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	29
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	29, 45, 271
AgsI	TTSAA	1 cut(s)	18
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	270, 319
AluBI	AGCT	3 cut(s)	7, 220, 377
AluI	AGCT	3 cut(s)	7, 220, 377
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	123, 195, 318
AlwNI	CAGNNNCTG	1 cut(s)	121
Ama87I	CYCGRG	2 cut(s)	151, 352
AoxI	GGCC	2 cut(s)	84, 148
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	149, 249
AvaI	CYCGRG	2 cut(s)	151, 352
AvaII	GGWCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	2 cut(s)	186, 283
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	2 cut(s)	272, 321
BcoDI	GTCTC	3 cut(s)	123, 195, 318
BfaI	CTAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	272, 321
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	2 cut(s)	151, 352
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	149, 249
BmiI	GGNNCC	2 cut(s)	58, 251
BmrFI	CCNGG	2 cut(s)	272, 321
BpmI	CTGGAG	2 cut(s)	293, 342
BsaJI	CCNNGG	5 cut(s)	28, 152, 270, 319, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 45, 271
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	272, 321
BseDI	CCNNGG	5 cut(s)	28, 152, 270, 319, 361
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	3 cut(s)	29, 45, 271
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	294, 369
BseRI	GAGGAG	2 cut(s)	79, 82
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	86, 150
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	2 cut(s)	151, 352
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	3 cut(s)	29, 45, 271
BsmAI	GTCTC	3 cut(s)	123, 195, 318
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	86, 150
BsoBI	CYCGRG	2 cut(s)	151, 352
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	276, 348
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	86, 150
BspCNI	CTCAG	2 cut(s)	293, 370
BspLI	GGNNCC	2 cut(s)	58, 251
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	5 cut(s)	28, 152, 270, 319, 361
BssMI	GATC	2 cut(s)	276, 348
Bst2UI	CCWGG	2 cut(s)	272, 321
BstDEI	CTNAG	2 cut(s)	280, 378
BstDSI	CCRYGG	2 cut(s)	28, 361
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	279, 351
BstMAI	GTCTC	3 cut(s)	123, 195, 318
BstMBI	GATC	2 cut(s)	276, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	2 cut(s)	272, 321
BstSCI	CCNGG	2 cut(s)	270, 319
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	86, 150
BtgI	CCRYGG	2 cut(s)	28, 361
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	149, 249
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	7 cut(s)	7, 86, 150, 187, 220, 340, 377
CviKI_1	RGCY	7 cut(s)	7, 86, 150, 187, 220, 340, 377
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	280, 378
DpnI	GATC	2 cut(s)	278, 350
DpnII	GATC	2 cut(s)	276, 348
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	151, 352
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	270, 319
EcoT38I	GRGCYC	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	1 cut(s)	27
FaiI	YATR	6 cut(s)	25, 129, 144, 418, 439, 448
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	23
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	2 cut(s)	293, 342
HaeIII	GGCC	2 cut(s)	86, 150
Hin1II	CATG	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	3 cut(s)	133, 334, 357
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	3 cut(s)	217, 224, 283
Hpy188III	TCNNGA	2 cut(s)	352, 354
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	2 cut(s)	249, 299
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	124, 316, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	2 cut(s)	280, 378
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	276, 348
LmnI	GCTCC	2 cut(s)	208, 225
LpnPI	CCDG	8 cut(s)	68, 74, 183, 257, 284, 306, 326, 333
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	204
MalI	GATC	2 cut(s)	278, 350
MboI	GATC	2 cut(s)	276, 348
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	304, 407
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	97, 100, 103, 147, 275, 375
MseI	TTAA	2 cut(s)	237, 410
MspA1I	CMGCKG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	272, 321
Mva1269I	GAATGC	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	272, 321
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	2 cut(s)	276, 348
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	2 cut(s)	58, 251
PaeR7I	CTCGAG	1 cut(s)	352
PctI	GAATGC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	133, 334
PflMI	CCANNNNNTGG	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	270, 319
PspGI	CCWGG	2 cut(s)	270, 319
PspN4I	GGNNCC	2 cut(s)	58, 251
PspPI	GGNCC	2 cut(s)	149, 249
PstNI	CAGNNNCTG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	237, 410
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	276, 348
Sau96I	GGNCC	2 cut(s)	149, 249
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	272, 321
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	9, 207, 222, 267, 379, 386
Sfr274I	CTCGAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
Sse9I	AATT	2 cut(s)	304, 407
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	270, 319
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	309, 353, 390
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	304, 407
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	2 cut(s)	133, 334
Tru1I	TTAA	2 cut(s)	237, 410
Tru9I	TTAA	2 cut(s)	237, 410
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	4 cut(s)	17, 220, 317, 420
TspGWI	ACGGA	3 cut(s)	151, 233, 378
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.