Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

22776773 .. 22778492

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATTAAGCTTCTTGGTTCAAATCCATGGCGTGGTAATGCCATTTCTGGGAGTTCTCGTGCACTGTTCTGGTCAATTGAGGCCACGGCCTCCTCTCCAGCCCCGTTTGAGCCTTTGTACGTTAGGATTTCCCGGGCCAGAAATCCGAGGGTTTCCATTGTACCGATTCTCAATCAGTGGGTCGATGAAATGAGAGATGTCAAGAAATGGGAGCTCCAGAGGTTCGTCAAGCTGTTCCGTAAACATCGCCGCTACAGCCACGCTCTCCAGATTTCAGAATGGATGAGTGATGCACAGAACCAGTATCTAACTCCGGGAGACATTGCGGTTCGGCTAGATTTGATCTCAAAAGTCTATGGCCTACAACAAGCTGAGGCGTACTTTAATAGCATCCCAGACCAACTGAGAAACTTCAAGGTGTATGGTGCTCTTTTATTCAGCTATGTAGAGAATAAATCTTCAGAAAAGGCTGAGATTATTTTCGAGAAGATGAACGAATTAGGTTATTTGAAAGGATCATTAGTTTATAATGCTATGCTTACCCTCTATTCTCAGATAGGTAAACATGAAAAGCTCGATATTCTGGTAAAGGAGATGGAAGAAAAGGGCATTGATTATGACAGTTATACGTTGAAGATTCAATTGAATTCGTATGCAGCCATTTCTGAGATAGACAAGTTGGAGAAGGTTTTAATGAAGATAGAAGCCTTTCGACCTTCTCTTCGATCGATCCTTTGGTCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

249

Amino Acids

28.79

Weight (kDa)

9.27

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	174 - 219	5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	2 cut(s)	250, 326
AclWI	GGATC	2 cut(s)	523, 724
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	119, 162, 380
AfiI	CCNNNNNNNGG	2 cut(s)	32, 48
AgsI	TTSAA	6 cut(s)	21, 415, 511, 634, 641, 646
AluBI	AGCT	6 cut(s)	10, 214, 232, 371, 441, 574
AluI	AGCT	6 cut(s)	10, 214, 232, 371, 441, 574
Alw21I	GWGCWC	3 cut(s)	64, 216, 430
Alw26I	GTCTC	1 cut(s)	312
Alw44I	GTGCAC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	523, 724
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	4 cut(s)	81, 87, 135, 358
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	705, 737
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	3 cut(s)	133, 134, 315
AvaI	CYCGRG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	3 cut(s)	64, 216, 430
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	1 cut(s)	102
BcnI	CCSGG	3 cut(s)	133, 134, 315
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	2 cut(s)	250, 657
BlsI	GCNGC	2 cut(s)	251, 658
Bme1390I	CCNGG	3 cut(s)	133, 134, 315
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	135
BmrFI	CCNGG	3 cut(s)	133, 134, 315
BmsI	GCATC	2 cut(s)	280, 399
BpmI	CTGGAG	3 cut(s)	81, 200, 251
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	3 cut(s)	133, 134, 315
Bsa29I	ATCGAT	1 cut(s)	728
BsaJI	CCNNGG	4 cut(s)	26, 84, 132, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 48
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	728
BseDI	CCNNGG	4 cut(s)	26, 84, 132, 146
BseGI	GGATG	2 cut(s)	288, 390
BseLI	CCNNNNNNNGG	2 cut(s)	32, 48
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	5 cut(s)	363, 395, 462, 566, 657
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	668
Bsh1285I	CGRYCG	1 cut(s)	728
BshFI	GGCC	4 cut(s)	83, 89, 137, 360
BshVI	ATCGAT	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	728
BsiHKAI	GWGCWC	3 cut(s)	64, 216, 430
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	133, 314
BslI	CCNNNNNNNGG	2 cut(s)	32, 48
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	4 cut(s)	83, 89, 137, 360
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	3 cut(s)	64, 216, 430
Bsp143I	GATC	4 cut(s)	342, 515, 725, 729
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	250, 326
BspANI	GGCC	4 cut(s)	83, 89, 137, 360
BspCNI	CTCAG	5 cut(s)	364, 396, 463, 565, 658
BspDI	ATCGAT	1 cut(s)	728
BspPI	GGATC	2 cut(s)	523, 724
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	4 cut(s)	26, 84, 132, 146
BssMI	GATC	4 cut(s)	342, 515, 725, 729
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	66, 623
Bst6I	CTCTTC	1 cut(s)	726
BstDEI	CTNAG	5 cut(s)	372, 404, 471, 552, 666
BstDSI	CCRYGG	2 cut(s)	26, 84
BstF5I	GGATG	2 cut(s)	288, 390
BstKTI	GATC	4 cut(s)	345, 518, 728, 732
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	342, 515, 725, 729
BstMCI	CGRYCG	1 cut(s)	728
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	131, 132, 313
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	728
BsuRI	GGCC	4 cut(s)	83, 89, 137, 360
BsuTUI	ATCGAT	1 cut(s)	728
BtgI	CCRYGG	2 cut(s)	26, 84
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	288, 390
BtsIMutI	CAGTG	2 cut(s)	62, 182
Cfr13I	GGNCC	1 cut(s)	135
Cfr9I	CCCGGG	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	118, 161, 379
CviAII	CATG	2 cut(s)	27, 566
CviQI	GTAC	3 cut(s)	118, 161, 379
DdeI	CTNAG	5 cut(s)	372, 404, 471, 552, 666
DpnI	GATC	4 cut(s)	344, 517, 727, 731
DpnII	GATC	4 cut(s)	342, 515, 725, 729
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	2 cut(s)	30, 569
FatI	CATG	2 cut(s)	26, 565
Fnu4HI	GCNGC	2 cut(s)	250, 657
FokI	GGATG	2 cut(s)	295, 377
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	250, 657
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	2 cut(s)	250, 657
GsuI	CTGGAG	3 cut(s)	81, 200, 251
HaeIII	GGCC	4 cut(s)	83, 89, 137, 360
HapII	CCGG	2 cut(s)	133, 314
Hin1II	CATG	2 cut(s)	30, 569
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	166, 637
HpaII	CCGG	2 cut(s)	133, 314
Hpy166II	GTNNAC	3 cut(s)	62, 242, 563
Hpy188I	TCNGA	5 cut(s)	147, 277, 463, 555, 667
Hpy188III	TCNNGA	4 cut(s)	202, 217, 268, 484
Hpy8I	GTNNAC	3 cut(s)	62, 242, 563
HpyAV	CCTTC	2 cut(s)	679, 726
HpyCH4III	ACNGT	2 cut(s)	66, 623
HpyCH4IV	ACGT	2 cut(s)	120, 629
HpyCH4V	TGCA	3 cut(s)	62, 293, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	5 cut(s)	372, 404, 471, 552, 666
HpySE526I	ACGT	2 cut(s)	120, 629
Hsp92II	CATG	2 cut(s)	30, 569
Kzo9I	GATC	4 cut(s)	342, 515, 725, 729
LmnI	GCTCC	2 cut(s)	211, 219
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	2 cut(s)	280, 399
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	120, 629
MalI	GATC	4 cut(s)	344, 517, 727, 731
MboI	GATC	4 cut(s)	342, 515, 725, 729
MboII	GAAGA	6 cut(s)	450, 499, 611, 646, 709, 713
MfeI	CAATTG	2 cut(s)	75, 641
MhlI	GDGCHC	3 cut(s)	64, 216, 430
MluCI	AATT	4 cut(s)	75, 497, 641, 646
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	7 cut(s)	73, 100, 103, 141, 213, 367, 554
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	3 cut(s)	6, 384, 692
MspI	CCGG	2 cut(s)	133, 314
MspR9I	CCNGG	3 cut(s)	133, 134, 315
MunI	CAATTG	2 cut(s)	75, 641
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	133, 134, 315
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	4 cut(s)	342, 515, 725, 729
NlaIII	CATG	2 cut(s)	30, 569
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	166, 637
PflMI	CCANNNNNTGG	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	251, 658
Ple19I	CGATCG	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	135
PvuI	CGATCG	1 cut(s)	728
RsaI	GTAC	3 cut(s)	119, 162, 380
RsaNI	GTAC	3 cut(s)	118, 161, 379
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	6, 384, 692
SatI	GCNGC	2 cut(s)	250, 657
Sau3AI	GATC	4 cut(s)	342, 515, 725, 729
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	3 cut(s)	133, 134, 315
SduI	GDGCHC	3 cut(s)	64, 216, 430
SfaNI	GCATC	2 cut(s)	280, 399
SfcI	CTRYAG	1 cut(s)	253
SmaI	CCCGGG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	75, 497, 641, 646
SsiI	CCGC	2 cut(s)	250, 326
SspMI	CTAG	1 cut(s)	335
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	131, 132, 313
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	66, 623
TaiI	ACGT	2 cut(s)	123, 632
TaqI	TCGA	6 cut(s)	183, 483, 576, 712, 724, 728
TasI	AATT	4 cut(s)	75, 497, 641, 646
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	166, 637
Tru1I	TTAA	3 cut(s)	6, 384, 692
Tru9I	TTAA	3 cut(s)	6, 384, 692
TscAI	CASTG	2 cut(s)	69, 182
TseI	GCWGC	1 cut(s)	656
TspDTI	ATGAA	4 cut(s)	201, 506, 582, 710
TspGWI	ACGGA	1 cut(s)	227
TspMI	CCCGGG	1 cut(s)	132
TspRI	CASTG	2 cut(s)	69, 182
Van91I	CCANNNNNTGG	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	646
XmaI	CCCGGG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.