FvH4_6g21300

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000378
Physical Location & Seq
Reverse (-)
14846125 .. 14849638
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21300.t3

Sequence Viewer

Length: 1233 bp
ATGTGGATGAGTGACAAAAGGTATGTTGAACTTTTGCACGCCGACGTAGCCATCCGGCTTGATTTGATTGCAAAAGTTCATGGTACAGAACAGGCCGAGAATTATTTCAACAACACTCCCGAAAAATTGAAAGTCCTTGAGGTTTACTGTGCTCTCCTCAACTGCTATGCCCATGCAAAACAGTTGGAAAAAGCAGAGGCCACCATGCAGAAGATGAAAGATTTGGGGTTATATATGACGTCACTGTCATACAATGTTTTGCTCAATTTGTATTACAAGACTGGACACAAGGAGAAATTTAATAGTCTGATGAGTGAAATGGAAGAGAATGGCATCAGGTATGACAAATTCACGTATGGAATCAAACTCAACGCAGCTGCAGCTGTTTCTGATCTTGAAGGAATTGACAAGATTCTGGCAGAATGGCAATCTGATCCGAGGAGTCTTTTGGACTGGGCTGATTATGCTATTGCAGCAAATGGTTATACAAAATCAGGAGCTGTGGACAAGGCTTTAGCAATGTTAAAGAGATCTGAGGAACAGATACCAAGTTCTAAAAGACAGAGGGGAGCATATGAGTATCTTATGACTCAATATGCAGTACTGGGGAAGAAAGACGATACTTTGAGACTATGGAAATGTTACAAGGAGCAGATGAAAGTATACAATAAGGGTTATGTATGCATAATGACCTCACTCTCTAAGTTTGATGACATTGAGAGTGCTGAGAAGATCTTTGAAGAGTGGGAATCTGAGCATTTAAATTATGATAACCGTATCCCAAATACTTTAATTGGTGCTTATACCAGGAATGGCTTTCTTGACAAGGCTGAAGCCATTATGAGCAGGATAACATTGAAGGATCAGAAACCTAGTCCTACAGCATGGAATTATTTGGCTAAAGGGTACCTTGATCAAGGTCAATTTGAGAAGGCAGTTGAATCGGCAACAAAAGCGGTTTCTTCTGCGCAGCCAGGGTGGATGCCGAACAAGGATGTTGTGGTCGGATGTCTGGAGTACTTCAAAATGAAAGCAGATCTGGAAGGAGCGGAGAAATTCATCAAACTGCTCAGGGATAAGAATATCATTCGTGTAAATATGCAGGAAAGATTGTTGAATCATATCAAAAACGGCAATTCAACTGCTGTAGTAGGTGAAATGTGGGATTGTCCAGACGGGGATGAAGAAACAAGTGAACTTACAGAGGTGGAATATGGCAGTAGTAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

411

Amino Acids

46.83

Weight (kDa)

5.53

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 221 3.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
AatII GACGTC 1 cut(s) 242
Acc16I TGCGCA 1 cut(s) 969
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 906
AccBSI CCGCTC 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 663
AciI CCGC 2 cut(s) 956, 1049
AclWI GGATC 2 cut(s) 428, 870
AcsI RAATTY 3 cut(s) 296, 347, 1055
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 4 cut(s) 85, 603, 908, 1019
AjnI CCWGG 2 cut(s) 806, 973
AluBI AGCT 3 cut(s) 377, 383, 500
AluI AGCT 3 cut(s) 377, 383, 500
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 2 cut(s) 428, 870
AlwNI CAGNNNCTG 1 cut(s) 500
AoxI GGCC 2 cut(s) 93, 198
ApeKI GCWGC 5 cut(s) 374, 377, 380, 473, 970
ApoI RAATTY 3 cut(s) 296, 347, 1055
Asp700I GAANNNNTTC 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 906
AspLEI GCGC 1 cut(s) 970
AsuHPI GGTGA 1 cut(s) 1166
BanI GGYRCC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 5 cut(s) 364, 386, 392, 485, 982
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 1147
BcgI CGANNNNNNTGC 2 cut(s) 924, 958
BciT130I CCWGG 2 cut(s) 808, 975
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 3 cut(s) 378, 879, 1146
BfuI GTATCC 1 cut(s) 788
BglII AGATCT 3 cut(s) 530, 732, 1036
BisI GCNGC 5 cut(s) 375, 378, 381, 474, 971
BlsI GCNGC 5 cut(s) 376, 379, 382, 475, 972
BmcAI AGTACT 2 cut(s) 603, 1019
Bme1390I CCNGG 2 cut(s) 808, 975
BmiI GGNNCC 1 cut(s) 908
BmrFI CCNGG 2 cut(s) 808, 975
BmrI ACTGGG 2 cut(s) 463, 614
BmsI GCATC 2 cut(s) 342, 972
BmuI ACTGGG 2 cut(s) 463, 614
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 1 cut(s) 1070
BpuEI CTTGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 437, 974
Bse1I ACTGG 3 cut(s) 286, 458, 609
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 2 cut(s) 808, 975
BseDI CCNNGG 2 cut(s) 437, 974
BseGI GGATG 6 cut(s) 12, 51, 987, 1000, 1013, 1186
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 4 cut(s) 525, 717, 744, 1084
BseNI ACTGG 3 cut(s) 286, 458, 609
BseRI GAGGAG 2 cut(s) 146, 454
BseXI GCAGC 5 cut(s) 364, 386, 392, 485, 982
BshFI GGCC 2 cut(s) 95, 200
BshNI GGYRCC 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 622
BsnI GGCC 2 cut(s) 95, 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
BspACI CCGC 2 cut(s) 956, 1049
BspANI GGCC 2 cut(s) 95, 200
BspCNI CTCAG 4 cut(s) 526, 718, 745, 1083
BspLI GGNNCC 1 cut(s) 908
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 428, 870
BspT107I GGYRCC 1 cut(s) 906
BsrBI CCGCTC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 3 cut(s) 286, 458, 609
BssECI CCNNGG 2 cut(s) 437, 974
BssMI GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
BssNAI GTATAC 1 cut(s) 664
BssNI GRCGYC 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 808, 975
Bst4CI ACNGT 4 cut(s) 149, 183, 246, 776
Bst6I CTCTTC 2 cut(s) 318, 735
BstACI GRCGYC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 6 cut(s) 534, 702, 726, 753, 1070, 1230
BstF5I GGATG 6 cut(s) 12, 51, 987, 1000, 1013, 1186
BstHHI GCGC 1 cut(s) 970
BstKTI GATC 7 cut(s) 394, 436, 533, 735, 865, 916, 1039
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
BstMWI GCNNNNNNNGC 5 cut(s) 47, 380, 464, 473, 953
BstNI CCWGG 2 cut(s) 808, 975
BstSCI CCNGG 2 cut(s) 806, 973
BstSFI CTRYAG 3 cut(s) 378, 879, 1146
BstV1I GCAGC 5 cut(s) 364, 386, 392, 485, 982
BstX2I RGATCY 3 cut(s) 530, 732, 1036
BstYI RGATCY 3 cut(s) 530, 732, 1036
BstZ17I GTATAC 1 cut(s) 664
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 2 cut(s) 95, 200
BtsCI GGATG 6 cut(s) 12, 51, 987, 1000, 1013, 1186
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 500
CfoI GCGC 1 cut(s) 970
Csp6I GTAC 4 cut(s) 84, 602, 907, 1018
CviAII CATG 4 cut(s) 80, 173, 205, 885
CviQI GTAC 4 cut(s) 84, 602, 907, 1018
DdeI CTNAG 6 cut(s) 534, 702, 726, 753, 1070, 1230
DpnI GATC 7 cut(s) 393, 435, 532, 734, 864, 915, 1038
DpnII GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
DraI TTTAAA 1 cut(s) 762
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 318, 735
EarI CTCTTC 2 cut(s) 318, 735
Eco57I CTGAAG 1 cut(s) 852
EcoRII CCWGG 2 cut(s) 806, 973
EcoT22I ATGCAT 1 cut(s) 686
FaeI CATG 4 cut(s) 83, 176, 208, 888
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FatI CATG 4 cut(s) 79, 172, 204, 884
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 5 cut(s) 375, 378, 381, 474, 971
FokI GGATG 6 cut(s) 19, 38, 994, 1007, 1020, 1193
Fsp4HI GCNGC 5 cut(s) 375, 378, 381, 474, 971
FspBI CTAG 1 cut(s) 873
FspI TGCGCA 1 cut(s) 969
GlaI GCGC 1 cut(s) 969
GluI GCNGC 5 cut(s) 375, 378, 381, 474, 971
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 2 cut(s) 95, 200
HapII CCGG 1 cut(s) 55
HhaI GCGC 1 cut(s) 970
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 83, 176, 208, 888
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HinfI GANTC 7 cut(s) 360, 412, 442, 589, 749, 941, 1117
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 1166
Hpy166II GTNNAC 4 cut(s) 145, 505, 664, 1196
Hpy188I TCNGA 8 cut(s) 309, 391, 433, 438, 535, 754, 867, 1007
Hpy188III TCNNGA 7 cut(s) 119, 395, 495, 821, 1013, 1040, 1172
Hpy8I GTNNAC 4 cut(s) 145, 505, 664, 1196
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 392, 853, 925, 1037
HpyCH4III ACNGT 4 cut(s) 149, 183, 246, 776
HpyCH4IV ACGT 3 cut(s) 45, 239, 353
HpyCH4V TGCA 9 cut(s) 37, 71, 176, 208, 380, 473, 599, 684, 1102
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 380, 464, 473, 953
HpyF3I CTNAG 6 cut(s) 534, 702, 726, 753, 1070, 1230
HpySE526I ACGT 3 cut(s) 45, 239, 353
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 83, 176, 208, 888
HspAI GCGC 1 cut(s) 968
KpnI GGTACC 1 cut(s) 910
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
LmnI GCTCC 4 cut(s) 497, 569, 649, 1046
Lsp1109I GCAGC 5 cut(s) 364, 386, 392, 485, 982
LweI GCATC 2 cut(s) 342, 972
MaeI CTAG 1 cut(s) 873
MaeII ACGT 3 cut(s) 45, 239, 353
MaeIII GTNAC 4 cut(s) 11, 240, 641, 1223
MalI GATC 7 cut(s) 393, 435, 532, 734, 864, 915, 1038
MbiI CCGCTC 1 cut(s) 1049
MboI GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
MboII GAAGA 7 cut(s) 223, 335, 622, 742, 752, 954, 1196
MflI RGATCY 3 cut(s) 530, 732, 1036
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 451, 583
MmeI TCCRAC 2 cut(s) 165, 985
MnlI CCTC 8 cut(s) 133, 167, 190, 432, 529, 558, 703, 1198
Mph1103I ATGCAT 1 cut(s) 686
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 4 cut(s) 300, 524, 761, 791
MspA1I CMGCKG 2 cut(s) 377, 383
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 808, 975
MvaI CCWGG 2 cut(s) 808, 975
MwoI GCNNNNNNNGC 5 cut(s) 47, 380, 464, 473, 953
NdeI CATATG 1 cut(s) 574
NdeII GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
NlaIII CATG 4 cut(s) 83, 176, 208, 888
NlaIV GGNNCC 1 cut(s) 908
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 11, 240
NsbI TGCGCA 1 cut(s) 969
NsiI ATGCAT 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 5 cut(s) 360, 412, 749, 941, 1117
PkrI GCNGC 5 cut(s) 376, 379, 382, 475, 972
PleI GAGTC 2 cut(s) 450, 583
PpsI GAGTC 2 cut(s) 450, 583
Ppu21I YACGTR 1 cut(s) 354
Psp6I CCWGG 2 cut(s) 806, 973
PspGI CCWGG 2 cut(s) 806, 973
PspN4I GGNNCC 1 cut(s) 908
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 3 cut(s) 530, 732, 1036
PvuII CAGCTG 2 cut(s) 377, 383
RsaI GTAC 4 cut(s) 85, 603, 908, 1019
RsaNI GTAC 4 cut(s) 84, 602, 907, 1018
SaqAI TTAA 4 cut(s) 300, 524, 761, 791
SatI GCNGC 5 cut(s) 375, 378, 381, 474, 971
Sau3AI GATC 7 cut(s) 391, 433, 530, 732, 862, 913, 1036
ScaI AGTACT 2 cut(s) 603, 1019
SchI GAGTC 2 cut(s) 451, 583
ScrFI CCNGG 2 cut(s) 808, 975
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 2 cut(s) 342, 972
SfcI CTRYAG 3 cut(s) 378, 879, 1146
SmiI ATTTAAAT 1 cut(s) 762
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 2 cut(s) 956, 1049
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 2 cut(s) 806, 973
SwaI ATTTAAAT 1 cut(s) 762
TaaI ACNGT 4 cut(s) 149, 183, 246, 776
TaiI ACGT 3 cut(s) 48, 242, 356
TatI WGTACW 2 cut(s) 601, 1017
TfiI GAWTC 5 cut(s) 360, 412, 749, 941, 1117
Tru1I TTAA 4 cut(s) 300, 524, 761, 791
Tru9I TTAA 4 cut(s) 300, 524, 761, 791
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 2 cut(s) 11, 240
TseI GCWGC 5 cut(s) 374, 377, 380, 473, 970
Tsp45I GTSAC 2 cut(s) 11, 240
TspDTI ATGAA 6 cut(s) 68, 230, 671, 1043, 1048, 1197
TspRI CASTG 1 cut(s) 249
XapI RAATTY 3 cut(s) 296, 347, 1055
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 1 cut(s) 873
ZraI GACGTC 1 cut(s) 240
ZrmI AGTACT 2 cut(s) 603, 1019
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.