pycom14g03980

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000378
Physical Location & Seq
Reverse (-)
3438714 .. 3439240
527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03980.2

Sequence Viewer

Length: 471 bp
ATGCATTCGTTCATTTGTTCTCAGATATCAATGTGGATGACTGACAGAAGCTGCTTTCGGCTTATGAGCTTTGATGTTGTTAACGGACTCGAATTGATTGCAAACATTCATGGAATAGAACAAGCTGAGGATTATTTTAACAATATTCCAAAACAACTGAAAACTCTCGAGGTTTACTGTGCTCTACTGAACGGCTTCGCTCATGCAAAACTTGTGGAAAAGGCTGGGGACGTTATGCAGAAGATGAGGGATTTAGGGTTTGCTAGGACACCGTTGTCCTACAACATTTTGCTCGATTTAGGGGCATTGGTCTTGACAAATACACTTACGGCAGAGTGGGAATCCAATCCCAAGGTTCCTAGGGATTGGGATGGTTATGTCAATGAAGCAAATGGTTATACGGAAGCACGAAATGTGAAAAAGGCATTGGCAATGCTAGAGAAGGTTGAGAAACTGATACCCAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

5.92

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 3 cut(s) 51, 69, 125
AluI AGCT 3 cut(s) 51, 69, 125
Alw21I GWGCWC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 194
AspA2I CCTAGG 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 167
AvrII CCTAGG 1 cut(s) 359
BaeI ACNNNNGTAYC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 38
BccI CCATC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 208, 345
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfaI CTAG 3 cut(s) 264, 360, 437
BisI GCNGC 1 cut(s) 52
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 351, 359
Bse3DI GCAATG 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 351, 359
BseGI GGATG 2 cut(s) 42, 376
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 35, 117
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 184
BspCNI CTCAG 2 cut(s) 34, 118
BspLI GGNNCC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 351, 359
BssT1I CCWWGG 2 cut(s) 351, 359
Bst4CI ACNGT 2 cut(s) 179, 273
BstDEI CTNAG 2 cut(s) 21, 126
BstF5I GGATG 2 cut(s) 42, 376
BstV1I GCAGC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 42, 376
CaiI CAGNNNCTG 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 2 cut(s) 110, 203
CviJI RGCY 6 cut(s) 51, 61, 69, 125, 195, 224
CviKI_1 RGCY 6 cut(s) 51, 61, 69, 125, 195, 224
DdeI CTNAG 2 cut(s) 21, 126
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 351, 359
Eco32I GATATC 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 351, 359
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 351, 359
FaeI CATG 2 cut(s) 113, 206
FaiI YATR 6 cut(s) 65, 111, 204, 236, 378, 399
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 109, 202
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 2 cut(s) 49, 383
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 3 cut(s) 264, 360, 437
GluI GCNGC 1 cut(s) 52
GsaI CCCAGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 113, 206
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 87, 341
HpaI GTTAAC 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 82, 175
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 167, 313
Hpy8I GTNNAC 2 cut(s) 82, 175
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 2 cut(s) 179, 273
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 4, 101, 206, 238
HpyF3I CTNAG 2 cut(s) 21, 126
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 113, 206
KspAI GTTAAC 1 cut(s) 82
LpnPI CCDG 1 cut(s) 210
Lsp1109I GCAGC 1 cut(s) 38
MaeI CTAG 3 cut(s) 264, 360, 437
MaeII ACGT 1 cut(s) 231
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 3 cut(s) 121, 163, 240
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 2 cut(s) 81, 138
Mva1269I GAATGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 113, 206
NlaIV GGNNCC 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 167
PctI GAATGC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 81, 138
SatI GCNGC 1 cut(s) 52
SchI GAGTC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 53, 71, 127, 174, 234, 357, 447
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 92
SspI AATATT 1 cut(s) 145
SspMI CTAG 3 cut(s) 264, 360, 437
StyI CCWWGG 2 cut(s) 351, 359
TaaI ACNGT 2 cut(s) 179, 273
TaiI ACGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 90, 168, 294
TasI AATT 1 cut(s) 92
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 81, 138
Tru9I TTAA 2 cut(s) 81, 138
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 98, 399
TspGWI ACGGA 2 cut(s) 99, 416
XhoI CTCGAG 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 264, 360, 437
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.