RLG00000023684

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000378
Physical Location & Seq
Forward (+)
27112822 .. 27114801
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023684

Sequence Viewer

Length: 873 bp
ATGAAGCACTCTCATTCCAGCTCCCTATTCAACACTCTCCGAAATGCACTACGTCGCGTTTGGCTGCCCAATTCTGATCAGAAGTTTCCAGAAGGCTCGCCAGACAGCCTCTACCGTCGGATCTTCTGGAGCGAATTTAAGGCCTCTGCATTACCGATTCTCGACCGGTGGGTCCAAGAAGGCCGAACCGTAGATAAAGATGACCTCGTCACTATCATCAAGGAGCTCAGGTACTACAAAAACTACGGCCGAGCTCTTGAGGTGTCCATGTGGATGAGTGACAAAAGGTATGCTGTACTTTTTCCCTCTGACGTAGCCATCCGGCTCGACTTGATTGCAAGAGTTCATGGAATAGAACAAGCTGAGAATTTTTTTAACAACACTCCGAAACAATTGAAAGTCCGTCAGGTTTACTATGCTCTACTTAACTGCTATGCTCGTGCAAAACAGCTGGAAAAAGCAGAGGCCACCATGCAGAAGATGAGGGATTTGGGTTTCTTTAGGACGTCATGGTCATACAATGCTTTGCTCAATTTGTATTATAAGACTGGAAACCATGATAAATTTGACAGTCTGATGAGTGAAATGGAAGAGAATGGCATCGCATTTGACAGATTCACATATGGGATCAGACTCAGTGCAGCTGCTGCTGCTTCTGATCTCGAGGGAATTGACAAGATTCTAGCAGAATGGGAATCCGATCCTAAGAGTCTTTTGGACTGGACTACTTATGCCATTGCAGCAAATGGTTATACAAAAGCAGGAGCTGTGGACAAGGCTTTAGCAATGCTAAAGAGATCAGAGGAACAGATACCAAGTTCTAAAAGACAGAGGCCAGCATATGAGCAACTTATGACGAGTATGCAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

291

Amino Acids

33.62

Weight (kDa)

9.03

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 172 - 213 2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AasI GACNNNNNNGTC 2 cut(s) 170, 511
AatII GACGTC 1 cut(s) 509
AccII CGCG 1 cut(s) 57
AclWI GGATC 3 cut(s) 128, 635, 695
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 3 cut(s) 134, 367, 563
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 3 cut(s) 233, 297, 869
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 31, 397
AluBI AGCT 7 cut(s) 21, 226, 254, 362, 451, 644, 767
AluI AGCT 7 cut(s) 21, 226, 254, 362, 451, 644, 767
Alw21I GWGCWC 2 cut(s) 228, 256
AlwI GGATC 3 cut(s) 128, 635, 695
AlwNI CAGNNNCTG 2 cut(s) 647, 767
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 5 cut(s) 141, 181, 247, 465, 833
ApeKI GCWGC 6 cut(s) 64, 641, 644, 647, 650, 740
ApoI RAATTY 3 cut(s) 134, 367, 563
AsiGI ACCGGT 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 662
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 228, 256
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 228, 256
BbvI GCAGC 6 cut(s) 51, 631, 634, 637, 653, 752
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BclI TGATCA 1 cut(s) 76
BfaI CTAG 2 cut(s) 683, 871
BisI GCNGC 6 cut(s) 65, 642, 645, 648, 651, 741
BlsI GCNGC 6 cut(s) 66, 643, 646, 649, 652, 742
BmcAI AGTACT 1 cut(s) 869
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 662
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 173
BmsI GCATC 1 cut(s) 609
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 506
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 553, 725
Bse3DI GCAATG 2 cut(s) 735, 792
BseGI GGATG 2 cut(s) 279, 318
BseMI GCAATG 2 cut(s) 735, 792
BseMII CTCAG 3 cut(s) 241, 354, 649
BseNI ACTGG 2 cut(s) 553, 725
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 6 cut(s) 51, 631, 634, 637, 653, 752
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 57
Bsh1285I CGRYCG 2 cut(s) 166, 250
BshFI GGCC 5 cut(s) 143, 183, 249, 467, 835
BshTI ACCGGT 1 cut(s) 165
BsiEI CGRYCG 2 cut(s) 166, 250
BsiHKAI GWGCWC 2 cut(s) 228, 256
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 2 cut(s) 166, 322
BsnI GGCC 5 cut(s) 143, 183, 249, 467, 835
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 228, 256
Bsp143I GATC 6 cut(s) 76, 120, 627, 658, 700, 797
BspANI GGCC 5 cut(s) 143, 183, 249, 467, 835
BspCNI CTCAG 3 cut(s) 240, 355, 648
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 3 cut(s) 128, 635, 695
BsrDI GCAATG 2 cut(s) 735, 792
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 2 cut(s) 553, 725
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 6 cut(s) 76, 120, 627, 658, 700, 797
BssNI GRCGYC 1 cut(s) 506
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 116, 190, 572
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 98, 837
BstDEI CTNAG 4 cut(s) 227, 363, 635, 705
BstF5I GGATG 2 cut(s) 279, 318
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 6 cut(s) 79, 123, 630, 661, 703, 800
BstMBI GATC 6 cut(s) 76, 120, 627, 658, 700, 797
BstMCI CGRYCG 2 cut(s) 166, 250
BstMWI GCNNNNNNNGC 3 cut(s) 647, 650, 740
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 6 cut(s) 51, 631, 634, 637, 653, 752
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 5 cut(s) 143, 183, 249, 467, 835
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 2 cut(s) 279, 318
BtsIMutI CAGTG 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 98, 837
CaiI CAGNNNCTG 2 cut(s) 647, 767
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 3 cut(s) 232, 296, 868
CspAI ACCGGT 1 cut(s) 165
CviAII CATG 5 cut(s) 268, 347, 472, 510, 557
CviQI GTAC 3 cut(s) 232, 296, 868
DdeI CTNAG 4 cut(s) 227, 363, 635, 705
DpnI GATC 6 cut(s) 78, 122, 629, 660, 702, 799
DpnII GATC 6 cut(s) 76, 120, 627, 658, 700, 797
DrdI GACNNNNNNGTC 2 cut(s) 170, 511
DseDI GACNNNNNNGTC 2 cut(s) 170, 511
EaeI YGGCCR 1 cut(s) 247
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Ecl136II GAGCTC 2 cut(s) 226, 254
EclXI CGGCCG 1 cut(s) 247
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 228, 256
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 247
Eco53kI GAGCTC 2 cut(s) 226, 254
Eco88I CYCGRG 1 cut(s) 662
EcoICRI GAGCTC 2 cut(s) 226, 254
EcoT38I GRGCYC 2 cut(s) 228, 256
FaeI CATG 5 cut(s) 271, 350, 475, 513, 560
FatI CATG 5 cut(s) 267, 346, 471, 509, 556
FauNDI CATATG 2 cut(s) 622, 841
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 6 cut(s) 65, 642, 645, 648, 651, 741
FokI GGATG 2 cut(s) 286, 305
FriOI GRGCYC 2 cut(s) 228, 256
Fsp4HI GCNGC 6 cut(s) 65, 642, 645, 648, 651, 741
FspBI CTAG 2 cut(s) 683, 871
GluI GCNGC 6 cut(s) 65, 642, 645, 648, 651, 741
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 5 cut(s) 143, 183, 249, 467, 835
HapII CCGG 2 cut(s) 166, 322
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 5 cut(s) 271, 350, 475, 513, 560
HinfI GANTC 6 cut(s) 157, 615, 633, 679, 695, 709
HpaII CCGG 2 cut(s) 166, 322
Hpy166II GTNNAC 2 cut(s) 412, 772
Hpy188III TCNNGA 5 cut(s) 89, 127, 161, 257, 662
Hpy8I GTNNAC 2 cut(s) 412, 772
Hpy99I CGWCG 2 cut(s) 57, 120
HpyAV CCTTC 2 cut(s) 86, 173
HpyCH4III ACNGT 3 cut(s) 116, 190, 572
HpyCH4IV ACGT 3 cut(s) 52, 312, 506
HpyCH4V TGCA 8 cut(s) 47, 149, 338, 443, 475, 641, 740, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 647, 650, 740
HpyF3I CTNAG 4 cut(s) 227, 363, 635, 705
HpySE526I ACGT 3 cut(s) 52, 312, 506
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 5 cut(s) 271, 350, 475, 513, 560
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 6 cut(s) 76, 120, 627, 658, 700, 797
LmnI GCTCC 4 cut(s) 26, 129, 223, 764
Lsp1109I GCAGC 6 cut(s) 51, 631, 634, 637, 653, 752
LweI GCATC 1 cut(s) 609
MaeI CTAG 2 cut(s) 683, 871
MaeII ACGT 3 cut(s) 52, 312, 506
MaeIII GTNAC 2 cut(s) 208, 278
MalI GATC 6 cut(s) 78, 122, 629, 660, 702, 799
MboI GATC 6 cut(s) 76, 120, 627, 658, 700, 797
MboII GAAGA 3 cut(s) 115, 490, 602
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 2 cut(s) 228, 256
MluCI AATT 7 cut(s) 70, 134, 367, 392, 532, 563, 669
MlyI GAGTC 2 cut(s) 627, 718
MmeI TCCRAC 1 cut(s) 98
MseI TTAA 3 cut(s) 138, 375, 426
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 451, 644
MspI CCGG 2 cut(s) 166, 322
MunI CAATTG 1 cut(s) 392
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 647, 650, 740
NdeI CATATG 2 cut(s) 622, 841
NdeII GATC 6 cut(s) 76, 120, 627, 658, 700, 797
NlaIII CATG 5 cut(s) 271, 350, 475, 513, 560
NlaIV GGNNCC 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 208, 278
PaeR7I CTCGAG 1 cut(s) 662
PceI AGGCCT 1 cut(s) 143
PfeI GAWTC 4 cut(s) 157, 615, 679, 695
PflFI GACNNNGTC 1 cut(s) 206
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 6 cut(s) 66, 643, 646, 649, 652, 742
PleI GAGTC 2 cut(s) 627, 717
PpsI GAGTC 2 cut(s) 627, 717
PsiI TTATAA 1 cut(s) 543
Psp124BI GAGCTC 2 cut(s) 228, 256
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 172
PstNI CAGNNNCTG 2 cut(s) 647, 767
PsuI RGATCY 1 cut(s) 120
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 2 cut(s) 451, 644
RsaI GTAC 3 cut(s) 233, 297, 869
RsaNI GTAC 3 cut(s) 232, 296, 868
RseI CAYNNNNRTG 1 cut(s) 272
SacI GAGCTC 2 cut(s) 228, 256
SaqAI TTAA 3 cut(s) 138, 375, 426
SatI GCNGC 6 cut(s) 65, 642, 645, 648, 651, 741
Sau3AI GATC 6 cut(s) 76, 120, 627, 658, 700, 797
Sau96I GGNCC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 2 cut(s) 627, 718
SduI GDGCHC 2 cut(s) 228, 256
SfaNI GCATC 1 cut(s) 609
Sfr274I CTCGAG 1 cut(s) 662
SinI GGWCC 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 257, 662
SmoI CTYRAG 2 cut(s) 257, 662
Sse9I AATT 7 cut(s) 70, 134, 367, 392, 532, 563, 669
SseBI AGGCCT 1 cut(s) 143
SspMI CTAG 2 cut(s) 683, 871
SstI GAGCTC 2 cut(s) 228, 256
StuI AGGCCT 1 cut(s) 143
TaaI ACNGT 3 cut(s) 116, 190, 572
TaiI ACGT 3 cut(s) 55, 315, 509
TaqI TCGA 3 cut(s) 162, 327, 663
TasI AATT 7 cut(s) 70, 134, 367, 392, 532, 563, 669
TatI WGTACW 2 cut(s) 295, 867
TfiI GAWTC 4 cut(s) 157, 615, 679, 695
Tru1I TTAA 3 cut(s) 138, 375, 426
Tru9I TTAA 3 cut(s) 138, 375, 426
TscAI CASTG 1 cut(s) 643
TseFI GTSAC 2 cut(s) 208, 278
TseI GCWGC 6 cut(s) 64, 641, 644, 647, 650, 740
Tsp45I GTSAC 2 cut(s) 208, 278
TspDTI ATGAA 2 cut(s) 17, 335
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 643
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 3 cut(s) 134, 367, 563
XhoI CTCGAG 1 cut(s) 662
XspI CTAG 2 cut(s) 683, 871
ZraI GACGTC 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.