Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000201.1

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

38007 .. 38832

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000201.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ctgccttcgtctctgtaccgcgggattctcctcgccggagacggaaaccctagggtttcaatcacccccgtactcaaccagtggttaaacgaaggccgaggcgttcagaagccggagctcgtcgatttcatcaagcagctccgcaagtgccgtcgcttcaaccacgcgctcgagctctcggaatggatgaccggcgaaatgaggcacgggatgacagccggagacgtctcgactcggctggatttgatctccaaagtccatgggctcgaggaagctgacaagtatttcgatagcgtctccggctccggcgcagccagaggcttcagagcgaattgtgatgtggagcggatggagaaggttatgatgctgatggaagaagatggagtggccaaaatggactggaatggttatgtttttgcggcggatgcttttcggaaggctggacatgtggagagggcattgacattgctggggacagcggagcagaaaatccgtggcaaggaggagaggagaattgcttacgagcacctgatcacattatatgctgctgctggtgataaaaggcaggtcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

191

Amino Acids

21.5

Weight (kDa)

7.96

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	556
AccBSI	CCGCTC	1 cut(s)	346
AccII	CGCG	2 cut(s)	21, 167
AciI	CCGC	7 cut(s)	19, 21, 142, 346, 419, 422, 479
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	17, 72
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	60, 160
AluBI	AGCT	4 cut(s)	118, 139, 175, 275
AluI	AGCT	4 cut(s)	118, 139, 175, 275
Alw21I	GWGCWC	3 cut(s)	120, 177, 528
Alw26I	GTCTC	5 cut(s)	15, 33, 216, 232, 301
Ama87I	CYCGRG	2 cut(s)	170, 266
AoxI	GGCC	2 cut(s)	94, 387
ApeKI	GCWGC	4 cut(s)	136, 311, 545, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	169, 311
AsuHPI	GGTGA	2 cut(s)	55, 566
AvaI	CYCGRG	2 cut(s)	170, 266
AvrII	CCTAGG	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	3 cut(s)	120, 177, 267
Bbv12I	GWGCWC	3 cut(s)	120, 177, 528
BbvI	GCAGC	4 cut(s)	148, 323, 532, 535
BccI	CCATC	3 cut(s)	343, 364, 374
BceAI	ACGGC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	5 cut(s)	15, 33, 216, 232, 301
BfaI	CTAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	556
BisI	GCNGC	5 cut(s)	137, 312, 420, 546, 549
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	5 cut(s)	138, 313, 421, 547, 550
BmeT110I	CYCGRG	2 cut(s)	170, 266
BmiI	GGNNCC	1 cut(s)	304
BmsI	GCATC	2 cut(s)	354, 415
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	5 cut(s)	19, 50, 97, 259, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	79, 404
Bse3DI	GCAATG	1 cut(s)	464
BseDI	CCNNGG	5 cut(s)	19, 50, 97, 259, 493
BseGI	GGATG	4 cut(s)	192, 216, 354, 430
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	79, 404
BseRI	GAGGAG	3 cut(s)	20, 518, 523
BseXI	GCAGC	4 cut(s)	148, 323, 532, 535
BseYI	CCCAGC	1 cut(s)	469
Bsh1236I	CGCG	2 cut(s)	21, 167
BshFI	GGCC	2 cut(s)	96, 389
BsiHKAI	GWGCWC	3 cut(s)	120, 177, 528
BsiHKCI	CYCGRG	2 cut(s)	170, 266
BsiSI	CCGG	6 cut(s)	36, 113, 192, 219, 300, 306
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	5 cut(s)	15, 33, 216, 232, 301
BsmBI	CGTCTC	5 cut(s)	15, 33, 216, 232, 301
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	2 cut(s)	96, 389
BsoBI	CYCGRG	2 cut(s)	170, 266
Bsp1286I	GDGCHC	4 cut(s)	120, 177, 267, 528
Bsp143I	GATC	2 cut(s)	246, 531
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	7 cut(s)	19, 21, 142, 346, 419, 422, 479
BspANI	GGCC	2 cut(s)	96, 389
BspFNI	CGCG	2 cut(s)	21, 167
BspLI	GGNNCC	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	556
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	79, 404
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	5 cut(s)	19, 50, 97, 259, 493
BssMI	GATC	2 cut(s)	246, 531
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	50, 259
BstACI	GRCGYC	1 cut(s)	225
BstDSI	CCRYGG	3 cut(s)	19, 259, 493
BstF5I	GGATG	4 cut(s)	192, 216, 354, 430
BstFNI	CGCG	2 cut(s)	21, 167
BstHHI	GCGC	2 cut(s)	169, 311
BstKTI	GATC	2 cut(s)	249, 534
BstMAI	GTCTC	5 cut(s)	15, 33, 216, 232, 301
BstMBI	GATC	2 cut(s)	246, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 425
BstNSI	RCATGY	1 cut(s)	449
BstUI	CGCG	2 cut(s)	21, 167
BstV1I	GCAGC	4 cut(s)	148, 323, 532, 535
BsuRI	GGCC	2 cut(s)	96, 389
BtgI	CCRYGG	3 cut(s)	19, 259, 493
BtsCI	GGATG	4 cut(s)	192, 216, 354, 430
BtsIMutI	CAGTG	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	556
CfoI	GCGC	2 cut(s)	169, 311
Cfr10I	RCCGGY	1 cut(s)	191
Cfr42I	CCGCGG	1 cut(s)	22
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	16, 71
CviAII	CATG	2 cut(s)	260, 446
CviQI	GTAC	2 cut(s)	16, 71
DpnI	GATC	2 cut(s)	248, 533
DpnII	GATC	2 cut(s)	246, 531
EaeI	YGGCCR	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	2 cut(s)	118, 175
Eco130I	CCWWGG	2 cut(s)	50, 259
Eco24I	GRGCYC	3 cut(s)	120, 177, 267
Eco53kI	GAGCTC	2 cut(s)	118, 175
Eco57I	CTGAAG	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	170, 266
EcoICRI	GAGCTC	2 cut(s)	118, 175
EcoT14I	CCWWGG	2 cut(s)	50, 259
EcoT38I	GRGCYC	3 cut(s)	120, 177, 267
ErhI	CCWWGG	2 cut(s)	50, 259
Esp3I	CGTCTC	5 cut(s)	15, 33, 216, 232, 301
FaeI	CATG	2 cut(s)	263, 449
FaiI	YATR	6 cut(s)	261, 362, 411, 447, 541, 543
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	259, 445
FauI	CCCGC	1 cut(s)	14
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	137, 312, 420, 546, 549
FokI	GGATG	4 cut(s)	199, 223, 361, 437
FriOI	GRGCYC	3 cut(s)	120, 177, 267
Fsp4HI	GCNGC	5 cut(s)	137, 312, 420, 546, 549
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	2 cut(s)	168, 310
GluI	GCNGC	5 cut(s)	137, 312, 420, 546, 549
GsaI	CCCAGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	96, 389
HapII	CCGG	6 cut(s)	36, 113, 192, 219, 300, 306
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	169, 311
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	263, 449
Hin6I	GCGC	2 cut(s)	167, 309
HinP1I	GCGC	2 cut(s)	167, 309
HinfI	GANTC	2 cut(s)	25, 232
HpaII	CCGG	6 cut(s)	36, 113, 192, 219, 300, 306
HphI	GGTGA	2 cut(s)	55, 566
Hpy188I	TCNGA	4 cut(s)	108, 181, 326, 435
Hpy188III	TCNNGA	1 cut(s)	229
Hpy99I	CGWCG	2 cut(s)	125, 156
HpyAV	CCTTC	4 cut(s)	15, 86, 349, 430
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 425
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	263, 449
HspAI	GCGC	2 cut(s)	167, 309
Ksp22I	TGATCA	1 cut(s)	531
KspI	CCGCGG	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	246, 531
LmnI	GCTCC	5 cut(s)	115, 144, 308, 343, 481
Lsp1109I	GCAGC	4 cut(s)	148, 323, 532, 535
LweI	GCATC	2 cut(s)	354, 415
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	225
MalI	GATC	2 cut(s)	248, 533
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	2 cut(s)	246, 531
MboII	GAAGA	2 cut(s)	386, 389
MhlI	GDGCHC	4 cut(s)	120, 177, 267, 528
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	2 cut(s)	331, 513
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	8 cut(s)	41, 92, 195, 262, 311, 447, 496, 501
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	2 cut(s)	21, 479
MspI	CCGG	6 cut(s)	36, 113, 192, 219, 300, 306
MvnI	CGCG	2 cut(s)	21, 167
MwoI	GCNNNNNNNGC	2 cut(s)	300, 425
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	246, 531
NlaIII	CATG	2 cut(s)	263, 449
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	2 cut(s)	122, 214
NspI	RCATGY	1 cut(s)	449
PaeR7I	CTCGAG	2 cut(s)	170, 266
PciI	ACATGT	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	138, 313, 421, 547, 550
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	445
Psp124BI	GAGCTC	2 cut(s)	120, 177
PspFI	CCCAGC	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	304
PspXI	VCTCGAGB	2 cut(s)	170, 266
RsaI	GTAC	2 cut(s)	17, 72
RsaNI	GTAC	2 cut(s)	16, 71
SacI	GAGCTC	2 cut(s)	120, 177
SacII	CCGCGG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	5 cut(s)	137, 312, 420, 546, 549
Sau3AI	GATC	2 cut(s)	246, 531
SchI	GAGTC	1 cut(s)	226
SduI	GDGCHC	4 cut(s)	120, 177, 267, 528
SetI	ASST	8 cut(s)	120, 141, 177, 228, 277, 360, 531, 570
SfaNI	GCATC	2 cut(s)	354, 415
Sfr274I	CTCGAG	2 cut(s)	170, 266
Sfr303I	CCGCGG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	22
SlaI	CTCGAG	2 cut(s)	170, 266
SmlI	CTYRAG	2 cut(s)	170, 266
SmoI	CTYRAG	2 cut(s)	170, 266
Sse9I	AATT	2 cut(s)	331, 513
SsiI	CCGC	7 cut(s)	19, 21, 142, 346, 419, 422, 479
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	2 cut(s)	120, 177
StyI	CCWWGG	2 cut(s)	50, 259
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	5 cut(s)	123, 171, 230, 267, 288
TasI	AATT	2 cut(s)	331, 513
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	86
TseI	GCWGC	4 cut(s)	136, 311, 545, 548
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	2 cut(s)	57, 482
TspRI	CASTG	1 cut(s)	86
XceI	RCATGY	1 cut(s)	449
XhoI	CTCGAG	2 cut(s)	170, 266
XmaJI	CCTAGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	51
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.