RchiOBHm_Chr3g0477821

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000378
Physical Location & Seq
Reverse (-)
23749167 .. 23753617
4451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44309

Sequence Viewer

Length: 225 bp
ATGCCACAATATGCAGCACTAGGGAAGAAAGATAATGTTATGAGACTATGGAAACTTTACAAGGGTCAGATGAAAGTATACAGTAAGGGTTATAGAATCATGATAACCTCACTCTTGAAGATGGGCGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAGTCAGTTTATGATGTTCGTATCCCAAATCACTTGATTGCTGCTTATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

74

Amino Acids

8.66

Weight (kDa)

9.22

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 118, 155
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 14, 212
BbvI GCAGC 2 cut(s) 26, 199
BccI CCATC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 15, 213
BlsI GCNGC 2 cut(s) 16, 214
BseMII CTCAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 26, 199
BsmAI GTCTC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 99
BssMI GATC 1 cut(s) 147
BssNAI GTATAC 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 79
Bst4CI ACNGT 2 cut(s) 83, 131
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 26, 199
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 99
CviAII CATG 1 cut(s) 100
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
FaeI CATG 1 cut(s) 103
FaiI YATR 7 cut(s) 12, 41, 49, 79, 93, 101, 183
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 15, 213
Fsp4HI GCNGC 2 cut(s) 15, 213
FspBI CTAG 1 cut(s) 20
GluI GCNGC 2 cut(s) 15, 213
Hin1II CATG 1 cut(s) 103
HinfI GANTC 2 cut(s) 96, 164
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 3 cut(s) 100, 115, 222
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4III ACNGT 2 cut(s) 83, 131
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 147
Lsp1109I GCAGC 2 cut(s) 26, 199
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 4 cut(s) 37, 130, 157, 167
MflI RGATCY 1 cut(s) 147
MnlI CCTC 1 cut(s) 118
NdeII GATC 1 cut(s) 147
NlaIII CATG 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 166
PagI TCATGA 1 cut(s) 99
PfeI GAWTC 2 cut(s) 96, 164
PkrI GCNGC 2 cut(s) 16, 214
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 2 cut(s) 15, 213
Sau3AI GATC 1 cut(s) 147
SetI ASST 1 cut(s) 110
SgeI CNNG 6 cut(s) 32, 73, 112, 127, 154, 217
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 83, 131
TfiI GAWTC 2 cut(s) 96, 164
TscAI CASTG 1 cut(s) 136
TseI GCWGC 2 cut(s) 14, 212
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.