Rh3DG240500

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000378
Physical Location & Seq
Reverse (-)
23126372 .. 23127100
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG240500.1

Sequence Viewer

Length: 498 bp
ATGCCACAATGTGCAGCACTAGGGAAGAAAGATAATGTTATGAGACTCTGGAAACTTTACAAAGGTCAGATGAAAGTATACAATAAGGGTTATAGAATCATGATAACCTCACTATTGAAGATTGGCGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAGTCAGTTTATGATGCCGAAGCTATTATTGAAAGGGTTACACTGAAGGGTGCGAAACCTGATGCAAAGTCATGGTATTCTTTGGCAAAAGTGCATCCTGATCATGATCAAACTGAGAAGGCAATTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACACGGATGTTTGGGCTGCCTGTCTCAACTACTTGATAATGAAACCTGATCCAGAGGGTGCCAAGGAATATATAAAGCTCCTCACCGATGAGAATGTTATCACCGTGATTACACAAGAGAGACTGTTGAATAAGATGAATAAGACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

165

Amino Acids

18.92

Weight (kDa)

8.39

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 11
AgsI TTSAA 4 cut(s) 118, 155, 203, 475
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 194, 424
AluI AGCT 2 cut(s) 194, 424
Alw26I GTCTC 3 cut(s) 37, 374, 460
AlwI GGATC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 14, 328, 362
AsuHPI GGTGA 2 cut(s) 421, 439
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 3 cut(s) 26, 340, 349
BciT130I CCWGG 1 cut(s) 333
BclI TGATCA 2 cut(s) 271, 277
BcoDI GTCTC 3 cut(s) 37, 374, 460
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 15, 329, 363
BlsI GCNGC 3 cut(s) 16, 330, 364
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 175, 223, 274
BpiI GAAGAC 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 2 cut(s) 265, 358
BseJI GATNNNNATC 1 cut(s) 276
BseMII CTCAG 2 cut(s) 182, 276
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 26, 340, 349
BsgI GTGCAG 2 cut(s) 33, 347
BshNI GGYRCC 1 cut(s) 404
BsmAI GTCTC 3 cut(s) 37, 374, 460
Bsp143I GATC 4 cut(s) 147, 271, 277, 394
BspCNI CTCAG 2 cut(s) 181, 277
BspHI TCATGA 2 cut(s) 99, 274
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 4 cut(s) 147, 271, 277, 394
BssNAI GTATAC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 3 cut(s) 131, 451, 471
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 168, 285
BstF5I GGATG 2 cut(s) 265, 358
BstKTI GATC 4 cut(s) 150, 274, 280, 397
BstMAI GTCTC 3 cut(s) 37, 374, 460
BstMBI GATC 4 cut(s) 147, 271, 277, 394
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 26, 340, 349
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 265, 358
BtsIMutI CAGTG 2 cut(s) 136, 212
CciI TCATGA 2 cut(s) 99, 274
CviAII CATG 3 cut(s) 100, 243, 275
CviJI RGCY 5 cut(s) 194, 323, 331, 362, 424
CviKI_1 RGCY 5 cut(s) 194, 323, 331, 362, 424
DdeI CTNAG 2 cut(s) 168, 285
DpnI GATC 4 cut(s) 149, 273, 279, 396
DpnII GATC 4 cut(s) 147, 271, 277, 394
DraIII CACNNNGTG 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 3 cut(s) 103, 246, 278
FaiI YATR 9 cut(s) 41, 79, 93, 101, 183, 244, 276, 417, 419
FatI CATG 3 cut(s) 99, 242, 274
FbaI TGATCA 2 cut(s) 271, 277
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 15, 329, 363
FokI GGATG 2 cut(s) 252, 365
Fsp4HI GCNGC 3 cut(s) 15, 329, 363
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 15, 329, 363
Hin1II CATG 3 cut(s) 103, 246, 278
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 3 cut(s) 45, 96, 164
HphI GGTGA 2 cut(s) 421, 439
Hpy166II GTNNAC 2 cut(s) 79, 303
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 5 cut(s) 49, 100, 269, 275, 398
Hpy8I GTNNAC 2 cut(s) 79, 303
HpyAV CCTTC 2 cut(s) 211, 283
HpyCH4III ACNGT 3 cut(s) 131, 451, 471
HpyCH4V TGCA 4 cut(s) 14, 236, 265, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 168, 285
Hsp92II CATG 3 cut(s) 103, 246, 278
Ksp22I TGATCA 2 cut(s) 271, 277
Kzo9I GATC 4 cut(s) 147, 271, 277, 394
LmnI GCTCC 1 cut(s) 429
LpnPI CCDG 8 cut(s) 34, 243, 282, 318, 345, 379, 405, 411
Lsp1109I GCAGC 3 cut(s) 26, 340, 349
LweI GCATC 3 cut(s) 175, 223, 274
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 208
MalI GATC 4 cut(s) 149, 273, 279, 396
MboI GATC 4 cut(s) 147, 271, 277, 394
MboII GAAGA 5 cut(s) 37, 130, 157, 167, 352
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 3 cut(s) 118, 394, 437
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 4 cut(s) 147, 271, 277, 394
NlaIII CATG 3 cut(s) 103, 246, 278
NlaIV GGNNCC 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 166
PagI TCATGA 2 cut(s) 99, 274
PfeI GAWTC 2 cut(s) 96, 164
PkrI GCNGC 3 cut(s) 16, 330, 364
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 3 cut(s) 15, 329, 363
Sau3AI GATC 4 cut(s) 147, 271, 277, 394
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 333
SetI ASST 6 cut(s) 67, 110, 196, 232, 394, 426
SfaNI GCATC 3 cut(s) 175, 223, 274
Sse9I AATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 3 cut(s) 131, 451, 471
TasI AATT 1 cut(s) 294
TfiI GAWTC 2 cut(s) 96, 164
TscAI CASTG 2 cut(s) 136, 219
TseI GCWGC 3 cut(s) 14, 328, 362
TspDTI ATGAA 3 cut(s) 86, 401, 497
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 2 cut(s) 136, 219
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.