Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

40509359 .. 40509916

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG214700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATAAGTTCGTTGGTTAAATTGGATGACATCGGTGGTGCCGAGAGGATTTGTAGGGAATGGGAGTCTGGATTCAAGTATTTTGATGCTAAAATACCCAGATTGTTGATCAATGCTTACTGCAGTAAAGGTCTTTTCCAGAAGGCCAAATCATATGTACAGAGGCTTGCAGAGAGTGGAAAGGAGGATGTAAGCACATGGTTGGCTTTGGCTGAGGGATTCTGTTGTTATGGCCGTGTATCAGAGGCAGTGGAAACGATGAGAAAGGCAGCAAGCTTGCCATGTCGACCAGGATGGAGGATCCATCATTCGACTTTGGTTGGCTGTCTTGATTACTTGAAAGAGAAGGGAGATGTGGAAGGAGCTCATGAGTTGATGAGATTATTGAGAGAAAAGGGTCATCTACGAGCAGACCTGTGTGATAAATTTGAGAACTATATCCATGGGGAAACCCAGATTGAGTCCTTAATATCAGGTCAAGAGGAAAATCATATGGAGGGGCTTGATGGAATTCAGGATGGAGAGGCATCTGATAGTGGAGCTCAACAATGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

185

Amino Acids

20.73

Weight (kDa)

5.42

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	286
AclWI	GGATC	2 cut(s)	295, 308
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	425, 510
AfaI	GTAC	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	76, 340
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	276, 365, 542
AluI	AGCT	3 cut(s)	276, 365, 542
Alw21I	GWGCWC	2 cut(s)	367, 544
AlwI	GGATC	2 cut(s)	295, 308
AoxI	GGCC	2 cut(s)	144, 232
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	425, 510
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	2 cut(s)	367, 544
Bbv12I	GWGCWC	2 cut(s)	367, 544
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	4 cut(s)	288, 312, 500, 512
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	40, 302
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	76, 536
Bpu10I	CCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	4 cut(s)	31, 193, 299, 523
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	146, 234
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	367, 544
BsnI	GGCC	2 cut(s)	146, 234
Bsp1286I	GDGCHC	2 cut(s)	367, 544
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	108, 300
Bsp19I	CCATGG	1 cut(s)	442
BspANI	GGCC	2 cut(s)	146, 234
BspCNI	CTCAG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	40, 302
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	295, 308
BspT107I	GGYRCC	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	108, 300
BssT1I	CCWWGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	168, 274, 278
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	4 cut(s)	31, 193, 299, 523
BstKTI	GATC	2 cut(s)	111, 303
BstMBI	GATC	2 cut(s)	108, 300
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	146, 234
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	4 cut(s)	31, 193, 299, 523
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	168, 274, 278
CciI	TCATGA	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	4 cut(s)	198, 282, 368, 443
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	110, 302
DpnII	GATC	2 cut(s)	108, 300
EaeI	YGGCCR	1 cut(s)	232
Ecl136II	GAGCTC	2 cut(s)	365, 542
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	367, 544
Eco53kI	GAGCTC	2 cut(s)	365, 542
EcoICRI	GAGCTC	2 cut(s)	365, 542
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	367, 544
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	201, 285, 371, 446
FatI	CATG	4 cut(s)	197, 281, 367, 442
FauNDI	CATATG	2 cut(s)	154, 492
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	4 cut(s)	38, 200, 306, 530
FriOI	GRGCYC	2 cut(s)	367, 544
Fsp4HI	GCNGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	146, 234
Hin1II	CATG	4 cut(s)	201, 285, 371, 446
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	4 cut(s)	65, 72, 219, 461
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	244, 532
Hpy188III	TCNNGA	6 cut(s)	69, 139, 329, 368, 479, 515
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	136, 340, 353
HpyCH4V	TGCA	2 cut(s)	123, 170
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	201, 285, 371, 446
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 300
LmnI	GCTCC	2 cut(s)	362, 539
LpnPI	CCDG	9 cut(s)	54, 112, 152, 276, 303, 428, 459, 467, 500
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	2 cut(s)	76, 536
MalI	GATC	2 cut(s)	110, 302
MboI	GATC	2 cut(s)	108, 300
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	367, 544
MluCI	AATT	3 cut(s)	20, 425, 510
MlyI	GAGTC	2 cut(s)	74, 470
MnlI	CCTC	9 cut(s)	39, 156, 178, 208, 238, 291, 475, 490, 517
MseI	TTAA	2 cut(s)	18, 467
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	442
NdeI	CATATG	2 cut(s)	154, 492
NdeII	GATC	2 cut(s)	108, 300
NlaIII	CATG	4 cut(s)	201, 285, 371, 446
NlaIV	GGNNCC	2 cut(s)	40, 302
NmeAIII	GCCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	72, 219
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	2 cut(s)	73, 469
PpsI	GAGTC	2 cut(s)	73, 469
Psp124BI	GAGCTC	2 cut(s)	367, 544
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	40, 302
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SacI	GAGCTC	2 cut(s)	367, 544
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	18, 467
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	108, 300
SchI	GAGTC	2 cut(s)	74, 470
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	367, 544
SetI	ASST	6 cut(s)	133, 278, 367, 417, 478, 544
SfaNI	GCATC	2 cut(s)	76, 536
SfcI	CTRYAG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	20, 425, 510
SstI	GAGCTC	2 cut(s)	367, 544
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	442
TaqI	TCGA	2 cut(s)	286, 311
TasI	AATT	3 cut(s)	20, 425, 510
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	72, 219
Tru1I	TTAA	2 cut(s)	18, 467
Tru9I	TTAA	2 cut(s)	18, 467
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	269
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	2 cut(s)	425, 510
XmiI	GTMKAC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.