Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

7869704 .. 7870909

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1046500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGTCTCGGTCACTATTGCTCTCTCTCAGACGGAGCAGCGGCGTCAGCAATGTTAGCGTTGGTGTTGGTGTTGGAAGGTTTCTGTCGTCAGGAGGAGCAGGTGCTGTGAATACTGAGTTTGACCAAGATTGTGAGGGAAGTGACGACCTCAAGAGCAGAGTGTTGAGGCTCAGGCAGCCCAAGCGAAGCGCCACCAACGTCCTTCAGAGATGGGTCTCCGAAGGCAACCAAATTTCCATCTCGGGCCTCCGCCAGATCTCTAAAGACCTCAGCAAGTCTCACCGTTACAAGCACGCCCTCGAGATATCCGAGTGGATGGTCAGCCATAATGAATTTGAGTTATCAGATTCTGACCATGCAGTCCGCATTGTCTTGATGACCAAAGTTTTTGGCATCGATGCAGCAGAGCGCTACTTTGAAGGTCTACGTCTTGCAAAAACAAATGAGACATGTACTGCTCTCCTCCACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

9.06

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	3 cut(s)	42, 253, 367
AcsI	RAATTY	2 cut(s)	234, 335
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	5, 45
AfaI	GTAC	1 cut(s)	457
AfeI	AGCGCT	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	422
Alw26I	GTCTC	4 cut(s)	12, 223, 285, 443
AlwNI	CAGNNNCTG	2 cut(s)	107, 353
Ama87I	CYCGRG	2 cut(s)	244, 302
Aor51HI	AGCGCT	1 cut(s)	413
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	39, 178, 404
ApoI	RAATTY	2 cut(s)	234, 335
AspLEI	GCGC	2 cut(s)	194, 414
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	244, 302
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	51, 190, 416
BccI	CCATC	3 cut(s)	207, 248, 313
BcoDI	GTCTC	4 cut(s)	12, 223, 285, 443
BfoI	RGCGCY	2 cut(s)	195, 415
BfuAI	ACCTGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	4 cut(s)	40, 43, 179, 405
BlsI	GCNGC	4 cut(s)	41, 44, 180, 406
BmeT110I	CYCGRG	2 cut(s)	244, 302
BmgT120I	GGNCC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	391, 405
Bpu10I	CCTNAGC	2 cut(s)	173, 272
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	5, 45
BsaI	GGTCTC	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	399
BseGI	GGATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	4 cut(s)	43, 108, 187, 286
BseRI	GAGGAG	2 cut(s)	111, 455
BseXI	GCAGC	3 cut(s)	51, 190, 416
BshFI	GGCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	399
BsiHKCI	CYCGRG	2 cut(s)	244, 302
BsmAI	GTCTC	4 cut(s)	12, 223, 285, 443
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	2 cut(s)	244, 302
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	42, 253, 367
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	4 cut(s)	42, 109, 186, 285
BspDI	ATCGAT	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	58
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	2 cut(s)	5, 45
Bst4CI	ACNGT	1 cut(s)	287
BstACI	GRCGYC	2 cut(s)	5, 45
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	29, 117, 173, 272, 474
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	195, 415
BstHHI	GCGC	2 cut(s)	194, 414
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	4 cut(s)	12, 223, 285, 443
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 57, 178, 184
BstNSI	RCATGY	1 cut(s)	456
BstV1I	GCAGC	3 cut(s)	51, 190, 416
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	2 cut(s)	107, 353
CfoI	GCGC	2 cut(s)	194, 414
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	2 cut(s)	359, 453
CviJI	RGCY	4 cut(s)	172, 181, 249, 327
CviKI_1	RGCY	4 cut(s)	172, 181, 249, 327
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	5 cut(s)	29, 117, 173, 272, 474
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	309
Eco47III	AGCGCT	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	2 cut(s)	244, 302
EcoRV	GATATC	1 cut(s)	309
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	362, 456
FaiI	YATR	3 cut(s)	330, 360, 454
FatI	CATG	2 cut(s)	358, 452
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	4 cut(s)	40, 43, 179, 405
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	4 cut(s)	40, 43, 179, 405
GlaI	GCGC	2 cut(s)	193, 413
GluI	GCNGC	4 cut(s)	40, 43, 179, 405
HaeII	RGCGCY	2 cut(s)	195, 415
HaeIII	GGCC	1 cut(s)	249
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	194, 414
Hin1I	GRCGYC	2 cut(s)	5, 45
Hin1II	CATG	2 cut(s)	362, 456
Hin6I	GCGC	2 cut(s)	192, 412
HinP1I	GCGC	2 cut(s)	192, 412
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	6 cut(s)	32, 210, 223, 313, 349, 355
Hpy188III	TCNNGA	4 cut(s)	93, 154, 304, 376
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	72, 215, 218, 416
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	2 cut(s)	201, 430
HpyCH4V	TGCA	3 cut(s)	362, 404, 437
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 57, 178, 184
HpyF3I	CTNAG	5 cut(s)	29, 117, 173, 272, 474
HpySE526I	ACGT	2 cut(s)	201, 430
Hsp92I	GRCGYC	2 cut(s)	5, 45
Hsp92II	CATG	2 cut(s)	362, 456
HspAI	GCGC	2 cut(s)	192, 412
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	36, 98
LpnPI	CCDG	4 cut(s)	78, 87, 160, 269
Lsp1109I	GCAGC	3 cut(s)	51, 190, 416
LweI	GCATC	2 cut(s)	391, 405
MaeII	ACGT	2 cut(s)	201, 430
MaeIII	GTNAC	3 cut(s)	12, 143, 287
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	2 cut(s)	234, 335
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	89, 130, 161, 162, 260, 281, 311, 476
MspA1I	CMGCKG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	48, 57, 178, 184
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	362, 456
NmuCI	GTSAC	2 cut(s)	12, 143
NspI	RCATGY	1 cut(s)	456
PaeR7I	CTCGAG	1 cut(s)	302
PaqCI	CACCTGC	1 cut(s)	92
PciI	ACATGT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	41, 44, 180, 406
PscI	ACATGT	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	2 cut(s)	107, 353
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
SatI	GCNGC	4 cut(s)	40, 43, 179, 405
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	247
SetI	ASST	7 cut(s)	83, 106, 153, 204, 273, 427, 433
SfaNI	GCATC	2 cut(s)	391, 405
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	152, 302
SmoI	CTYRAG	2 cut(s)	152, 302
Sse9I	AATT	2 cut(s)	234, 335
SsiI	CCGC	3 cut(s)	42, 253, 367
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	2 cut(s)	204, 433
TaqI	TCGA	2 cut(s)	303, 399
TasI	AATT	2 cut(s)	234, 335
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	350
TseFI	GTSAC	2 cut(s)	12, 143
TseI	GCWGC	3 cut(s)	39, 178, 404
Tsp45I	GTSAC	2 cut(s)	12, 143
TspDTI	ATGAA	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	49
XapI	RAATTY	2 cut(s)	234, 335
XceI	RCATGY	1 cut(s)	456
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.