Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

36104035 .. 36104373

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACCGGCGAAATGAGGCACGGGATGACAGCCGGAGACGTCTCGACTCGGCTGGATTTGATCTCGAAAGTCCATGGGCTCGAGGAAGCTGACAAGTATTTCGATAGCGTCTCCGGCTCCGGTGCAGCCAGAGGCTTCAGAGGTATGCGTGTGTATGGTGCTCTGTTATTCTGCTATGTTGATCATAAATGTGTCGAAAAGGCCGAGAGGCTTTTCGAGAGGATGAAGGAGTTGGGGCATGTGGAAGGGGTTTGGGCTTATAATACATTGTTGACGCTTTATTTTAGGATGTGTGAGAGTGCAAAGGTAGATGTTTTAGTGAAAGAGATGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

112

Amino Acids

12.69

Weight (kDa)

6.07

Isoelectric Point (pI)

2.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	51 - 79	9.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	261
AatII	GACGTC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	39
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	3 cut(s)	30, 46, 115
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AvaI	CYCGRG	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	30, 46, 115
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	73
BsaWI	WCCGGW	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	5
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	3 cut(s)	30, 228, 294
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	4 cut(s)	6, 33, 114, 120
BsmAI	GTCTC	3 cut(s)	30, 46, 115
BsmBI	CGTCTC	3 cut(s)	30, 46, 115
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	81, 163
Bsp143I	GATC	2 cut(s)	60, 181
Bsp19I	CCATGG	1 cut(s)	73
BspANI	GGCC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	60, 181
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	3 cut(s)	30, 228, 294
BstKTI	GATC	2 cut(s)	63, 184
BstMAI	GTCTC	3 cut(s)	30, 46, 115
BstMBI	GATC	2 cut(s)	60, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	30, 228, 294
Cfr10I	RCCGGY	1 cut(s)	5
CseI	GACGC	2 cut(s)	97, 283
CviAII	CATG	2 cut(s)	74, 239
DpnI	GATC	2 cut(s)	62, 183
DpnII	GATC	2 cut(s)	60, 181
Eco130I	CCWWGG	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	3 cut(s)	30, 46, 115
FaeI	CATG	2 cut(s)	77, 242
FaiI	YATR	7 cut(s)	75, 146, 156, 177, 186, 240, 261
FatI	CATG	2 cut(s)	73, 238
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	37, 235, 301
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	6, 33, 114, 120
HgaI	GACGC	2 cut(s)	97, 283
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	77, 242
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	4 cut(s)	6, 33, 114, 120
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	3 cut(s)	43, 64, 217
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	220, 239
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	125, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	77, 242
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	60, 181
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	6 cut(s)	19, 38, 46, 127, 133, 142
Lsp1109I	GCAGC	1 cut(s)	137
MaeII	ACGT	1 cut(s)	39
MalI	GATC	2 cut(s)	62, 183
MboI	GATC	2 cut(s)	60, 181
MhlI	GDGCHC	2 cut(s)	81, 163
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	9, 76, 125, 134, 201, 213
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	4 cut(s)	6, 33, 114, 120
MwoI	GCNNNNNNNGC	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	2 cut(s)	60, 181
NlaIII	CATG	2 cut(s)	77, 242
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	2 cut(s)	28, 229
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PsiI	TTATAA	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	60, 181
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	81, 163
SetI	ASST	4 cut(s)	42, 91, 145, 309
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	73
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	6 cut(s)	44, 65, 81, 102, 195, 216
TasI	AATT	1 cut(s)	334
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	239
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.