Rmu_sc0022990.1_g000001

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022990.1
OG0000378
Physical Location & Seq
Forward (+)
367 .. 1593
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022990.1_g000001.1.cds

Sequence Viewer

Length: 1227 bp
atgtggatgagtgacagaaggtatgttgaacttttgccctctgacgtagccatccggctcgacatgattgcaaaagtgcatggaatagaacatgctgagaagtattttaacaacactcccgaacaattgaaagcctatcaggtttactatgctctcctcaactgctatgctcatgcaaaacagttggaaaaagcagacgccaccatgcagaagatgagggatttggggttctgtaggacgtcatggtcatacaatgctttgctcaatttgtattataagaccggaaaccatgagaaatttgacaatctgatgagtgaaatggaagagagtggcatcaggtttgacagattcacatatgggatcagactcagtgcagctgcagctgcttctgatctcaagggaattgacaagattctggcagaatgggaatccgatcctaagagtcttgtggactggactagttatgctgttgcagcaaatggttatacaaaagcaggagctgtggacaaggctttagcaatgctaaagagatctgaggaacagataccaagttctaaaagacagaggcaagcatatgagcgccttatgacgcaatatgcagtactagggaagaaagacgatactttgagactatggaaatgttacaaggagcagatgaaagtatacaataagggttatctatgcgtaatgacctcactcttgaagactgatgacattgagagtgctgaaaagatctatgaagagtgggaatctgagcaagcgatatatgatattcgtatacccaataccttgattggtgcttataccaggaaaggttttcttgacaaggctgaagccattatgagcaggataagattgaaggatgggaaccctaatcctacaaggtggatttatttggcgaaaatgtatattgatcaaggtcaaattgataaggcacttgaatcggcaaaaaaagcagtttctgctgcacagccagggggggtgccggacaaggatgttgtgatcgcatgtctggaatacttcaaaatgaaagcagatctggaaggagccgaggaatttataaaattccttggggataagaatattattcccgtaaatacgcaggagagattgttgaatcatataaaaaatgtgaattcaactgctgtagtaggtgaaatggaatgggattgtccaaagggggatgaagaaccaagtgaacttacagaggtggaatctgggcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

408

Amino Acids

46.66

Weight (kDa)

5.66

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 276, 1061
AasI GACNNNNNNGTC 1 cut(s) 244
AatII GACGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 982
AccI GTMKAC 2 cut(s) 663, 778
AclWI GGATC 2 cut(s) 368, 428
AcsI RAATTY 4 cut(s) 296, 1055, 1064, 1135
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 2 cut(s) 198, 239
AfaI GTAC 1 cut(s) 603
AgsI TTSAA 8 cut(s) 29, 130, 703, 859, 941, 1024, 1117, 1140
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 2 cut(s) 806, 973
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 377, 383, 500
AluI AGCT 3 cut(s) 377, 383, 500
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 2 cut(s) 368, 428
AlwNI CAGNNNCTG 2 cut(s) 500, 962
ApeKI GCWGC 6 cut(s) 374, 377, 380, 383, 473, 965
ApoI RAATTY 4 cut(s) 296, 1055, 1064, 1135
AspLEI GCGC 1 cut(s) 582
AsuHPI GGTGA 1 cut(s) 1166
BanI GGYRCC 1 cut(s) 982
BbsI GAAGAC 1 cut(s) 710
BbvI GCAGC 6 cut(s) 364, 370, 386, 392, 485, 952
BccI CCATC 2 cut(s) 59, 857
BcgI CGANNNNNNTGC 4 cut(s) 50, 84, 924, 958
BciT130I CCWGG 2 cut(s) 808, 975
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 622
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 2 cut(s) 459, 605
BfmI CTRYAG 3 cut(s) 232, 378, 1146
BfoI RGCGCY 1 cut(s) 583
BglII AGATCT 3 cut(s) 530, 732, 1036
BisI GCNGC 6 cut(s) 375, 378, 381, 384, 474, 966
BlsI GCNGC 6 cut(s) 376, 379, 382, 385, 475, 967
BmcAI AGTACT 1 cut(s) 603
Bme1390I CCNGG 2 cut(s) 808, 975
BmiI GGNNCC 3 cut(s) 869, 984, 1048
BmrFI CCNGG 2 cut(s) 808, 975
BmsI GCATC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 198, 239
BsaJI CCNNGG 3 cut(s) 974, 1050, 1069
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 1097, 1127
Bse1I ACTGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 2 cut(s) 808, 975
BseDI CCNNGG 3 cut(s) 974, 1050, 1069
BseGI GGATG 5 cut(s) 12, 51, 868, 1000, 1189
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 4 cut(s) 87, 382, 525, 744
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 6 cut(s) 364, 370, 386, 392, 485, 952
BsgI GTGCAG 2 cut(s) 393, 951
BshNI GGYRCC 1 cut(s) 982
BsiSI CCGG 3 cut(s) 55, 282, 986
BsmAI GTCTC 1 cut(s) 622
Bsp143I GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
BspCNI CTCAG 4 cut(s) 88, 381, 526, 745
BspLI GGNNCC 3 cut(s) 869, 984, 1048
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 368, 428
BspT107I GGYRCC 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 3 cut(s) 974, 1050, 1069
BssMI GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
BssNAI GTATAC 2 cut(s) 664, 779
BssNI GRCGYC 2 cut(s) 198, 239
BssT1I CCWWGG 1 cut(s) 1069
Bst1107I GTATAC 2 cut(s) 664, 779
Bst2UI CCWGG 2 cut(s) 808, 975
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 318, 735
BstACI GRCGYC 2 cut(s) 198, 239
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 2 cut(s) 570, 759
BstDEI CTNAG 5 cut(s) 96, 368, 438, 534, 753
BstF5I GGATG 5 cut(s) 12, 51, 868, 1000, 1189
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 8 cut(s) 363, 394, 436, 533, 735, 916, 1005, 1039
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
BstMWI GCNNNNNNNGC 5 cut(s) 380, 383, 473, 953, 962
BstNI CCWGG 2 cut(s) 808, 975
BstNSI RCATGY 2 cut(s) 95, 1011
BstSCI CCNGG 2 cut(s) 806, 973
BstSFI CTRYAG 3 cut(s) 232, 378, 1146
BstV1I GCAGC 6 cut(s) 364, 370, 386, 392, 485, 952
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 3 cut(s) 530, 732, 1036
BstYI RGATCY 3 cut(s) 530, 732, 1036
BstZ17I GTATAC 2 cut(s) 664, 779
BtsCI GGATG 5 cut(s) 12, 51, 868, 1000, 1189
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 570, 759
CaiI CAGNNNCTG 2 cut(s) 500, 962
CfoI GCGC 1 cut(s) 582
CseI GACGC 2 cut(s) 206, 598
Csp6I GTAC 1 cut(s) 602
CviAII CATG 8 cut(s) 64, 80, 92, 173, 205, 243, 290, 1008
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 5 cut(s) 96, 368, 438, 534, 753
DpnI GATC 8 cut(s) 362, 393, 435, 532, 734, 915, 1004, 1038
DpnII GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 318, 735
EarI CTCTTC 2 cut(s) 318, 735
Eco130I CCWWGG 1 cut(s) 1069
Eco57I CTGAAG 1 cut(s) 852
EcoRI GAATTC 1 cut(s) 1135
EcoRII CCWGG 2 cut(s) 806, 973
EcoT14I CCWWGG 1 cut(s) 1069
ErhI CCWWGG 1 cut(s) 1069
FaeI CATG 8 cut(s) 67, 83, 95, 176, 208, 246, 293, 1011
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FatI CATG 8 cut(s) 63, 79, 91, 172, 204, 242, 289, 1007
FauNDI CATATG 2 cut(s) 355, 574
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 2 cut(s) 663, 778
Fnu4HI GCNGC 6 cut(s) 375, 378, 381, 384, 474, 966
FokI GGATG 5 cut(s) 19, 38, 875, 1007, 1196
Fsp4HI GCNGC 6 cut(s) 375, 378, 381, 384, 474, 966
FspBI CTAG 2 cut(s) 459, 605
GlaI GCGC 1 cut(s) 581
GluI GCNGC 6 cut(s) 375, 378, 381, 384, 474, 966
HaeII RGCGCY 1 cut(s) 583
HapII CCGG 3 cut(s) 55, 282, 986
HgaI GACGC 2 cut(s) 206, 598
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 2 cut(s) 198, 239
Hin1II CATG 8 cut(s) 67, 83, 95, 176, 208, 246, 293, 1011
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 9 cut(s) 348, 366, 412, 428, 442, 749, 941, 1117, 1214
HpaII CCGG 3 cut(s) 55, 282, 986
HphI GGTGA 1 cut(s) 1166
Hpy166II GTNNAC 6 cut(s) 145, 451, 505, 664, 779, 1199
Hpy188I TCNGA 7 cut(s) 43, 309, 365, 391, 433, 535, 754
Hpy188III TCNNGA 5 cut(s) 119, 700, 821, 1013, 1040
Hpy8I GTNNAC 6 cut(s) 145, 451, 505, 664, 779, 1199
HpyAV CCTTC 3 cut(s) 12, 853, 1037
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 45, 239
HpyCH4V TGCA 9 cut(s) 71, 79, 176, 208, 374, 380, 473, 599, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 383, 473, 953, 962
HpyF3I CTNAG 5 cut(s) 96, 368, 438, 534, 753
HpySE526I ACGT 2 cut(s) 45, 239
Hsp92I GRCGYC 2 cut(s) 198, 239
Hsp92II CATG 8 cut(s) 67, 83, 95, 176, 208, 246, 293, 1011
HspAI GCGC 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
LmnI GCTCC 3 cut(s) 497, 649, 1046
Lsp1109I GCAGC 6 cut(s) 364, 370, 386, 392, 485, 952
LweI GCATC 1 cut(s) 342
MaeI CTAG 2 cut(s) 459, 605
MaeII ACGT 2 cut(s) 45, 239
MaeIII GTNAC 2 cut(s) 11, 641
MalI GATC 8 cut(s) 362, 393, 435, 532, 734, 915, 1004, 1038
MboI GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
MboII GAAGA 6 cut(s) 223, 335, 622, 715, 752, 1199
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 3 cut(s) 530, 732, 1036
MluCI AATT 8 cut(s) 125, 265, 296, 402, 924, 1055, 1064, 1135
MlyI GAGTC 2 cut(s) 360, 451
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 8 cut(s) 49, 167, 210, 529, 558, 703, 1045, 1201
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 377, 383
MspI CCGG 3 cut(s) 55, 282, 986
MspR9I CCNGG 2 cut(s) 808, 975
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 2 cut(s) 808, 975
MwoI GCNNNNNNNGC 5 cut(s) 380, 383, 473, 953, 962
NdeI CATATG 2 cut(s) 355, 574
NdeII GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
NlaIII CATG 8 cut(s) 67, 83, 95, 176, 208, 246, 293, 1011
NlaIV GGNNCC 3 cut(s) 869, 984, 1048
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 2 cut(s) 95, 1011
PfeI GAWTC 7 cut(s) 348, 412, 428, 749, 941, 1117, 1214
PkrI GCNGC 6 cut(s) 376, 379, 382, 385, 475, 967
PleI GAGTC 2 cut(s) 360, 450
PpsI GAGTC 2 cut(s) 360, 450
PsiI TTATAA 2 cut(s) 276, 1061
Psp6I CCWGG 2 cut(s) 806, 973
PspGI CCWGG 2 cut(s) 806, 973
PspN4I GGNNCC 3 cut(s) 869, 984, 1048
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 2 cut(s) 500, 962
PsuI RGATCY 3 cut(s) 530, 732, 1036
PvuII CAGCTG 2 cut(s) 377, 383
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 6 cut(s) 375, 378, 381, 384, 474, 966
Sau3AI GATC 8 cut(s) 360, 391, 433, 530, 732, 913, 1002, 1036
ScaI AGTACT 1 cut(s) 603
SchI GAGTC 2 cut(s) 360, 451
ScrFI CCNGG 2 cut(s) 808, 975
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 3 cut(s) 232, 378, 1146
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 8 cut(s) 125, 265, 296, 402, 924, 1055, 1064, 1135
SspI AATATT 1 cut(s) 1084
SspMI CTAG 2 cut(s) 459, 605
StyD4I CCNGG 2 cut(s) 806, 973
StyI CCWWGG 1 cut(s) 1069
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 2 cut(s) 48, 242
TaqI TCGA 1 cut(s) 60
TasI AATT 8 cut(s) 125, 265, 296, 402, 924, 1055, 1064, 1135
TatI WGTACW 1 cut(s) 601
TfiI GAWTC 7 cut(s) 348, 412, 428, 749, 941, 1117, 1214
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 6 cut(s) 374, 377, 380, 383, 473, 965
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 671, 753, 1043, 1200
TspRI CASTG 1 cut(s) 376
XapI RAATTY 4 cut(s) 296, 1055, 1064, 1135
XceI RCATGY 2 cut(s) 95, 1011
XmiI GTMKAC 2 cut(s) 663, 778
XspI CTAG 2 cut(s) 459, 605
ZraI GACGTC 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.