RLG00000023687

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000378
Physical Location & Seq
Forward (+)
27120679 .. 27121215
537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023687

Sequence Viewer

Length: 537 bp
ATGCCACAATATGCAGCACTAGGGAAGAAAGATAATGTTGTGAGACTATGGGAACTTTACAAGGATCAGATGAAAGTATACAATAAGGGTTATAGAATCATGATAACCTCACTCTTGAAGATTGGCGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAATCAGTTTATGATGTTCGTATCCCAAATCACTTGATTGCTGCTTATGCCAGAAAAGGTCTTCTTGACAAGGCTGAAGCTATTATTGAAAGGGTTATACTGAAGGGTGCGAAACCTAATGCAAAGTCATGGTATTCTTTGACAAAAGTGCATCCTGATCATGATCAAACTGAGAAGGGAGTTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACAAGGATGTTTTGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGTGCCAATGAATATATAAAAGCTCCTCACCGAGAAGAATATTATCACCATGATTACACAGGACAGACAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

179

Amino Acids

20.52

Weight (kDa)

8.43

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 2 cut(s) 72, 446
AcuI CTGAAG 2 cut(s) 267, 293
AgsI TTSAA 4 cut(s) 118, 155, 260, 533
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 251, 482
AluI AGCT 2 cut(s) 251, 482
Alw26I GTCTC 2 cut(s) 37, 431
AlwI GGATC 2 cut(s) 72, 446
ApeKI GCWGC 4 cut(s) 14, 212, 385, 419
AsuHPI GGTGA 2 cut(s) 479, 497
BanI GGYRCC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 224, 404
BbvI GCAGC 4 cut(s) 26, 199, 397, 406
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 2 cut(s) 328, 334
BcoDI GTCTC 2 cut(s) 37, 431
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 1 cut(s) 147
BisI GCNGC 4 cut(s) 15, 213, 386, 420
BlsI GCNGC 4 cut(s) 16, 214, 387, 421
Bme1390I CCNGG 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 2 cut(s) 224, 404
BsaBI GATNNNNATC 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 322, 415
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 2 cut(s) 182, 333
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 4 cut(s) 26, 199, 397, 406
BsgI GTGCAG 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 37, 431
Bsp143I GATC 5 cut(s) 64, 147, 328, 334, 451
BspCNI CTCAG 2 cut(s) 181, 334
BspHI TCATGA 2 cut(s) 99, 331
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 2 cut(s) 72, 446
BspT107I GGYRCC 1 cut(s) 461
BssMI GATC 5 cut(s) 64, 147, 328, 334, 451
BssNAI GTATAC 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 2 cut(s) 131, 529
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 168, 342
BstF5I GGATG 2 cut(s) 322, 415
BstKTI GATC 5 cut(s) 67, 150, 331, 337, 454
BstMAI GTCTC 2 cut(s) 37, 431
BstMBI GATC 5 cut(s) 64, 147, 328, 334, 451
BstMWI GCNNNNNNNGC 2 cut(s) 218, 377
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 26, 199, 397, 406
BstV2I GAAGAC 2 cut(s) 224, 404
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 322, 415
BtsIMutI CAGTG 1 cut(s) 136
CciI TCATGA 2 cut(s) 99, 331
CviAII CATG 4 cut(s) 100, 300, 332, 509
CviJI RGCY 6 cut(s) 245, 251, 380, 388, 419, 482
CviKI_1 RGCY 6 cut(s) 245, 251, 380, 388, 419, 482
DdeI CTNAG 2 cut(s) 168, 342
DpnI GATC 5 cut(s) 66, 149, 330, 336, 453
DpnII GATC 5 cut(s) 64, 147, 328, 334, 451
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco57I CTGAAG 2 cut(s) 267, 293
EcoRII CCWGG 1 cut(s) 388
FaeI CATG 4 cut(s) 103, 303, 335, 512
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 4 cut(s) 99, 299, 331, 508
FbaI TGATCA 2 cut(s) 328, 334
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 15, 213, 386, 420
FokI GGATG 2 cut(s) 309, 422
Fsp4HI GCNGC 4 cut(s) 15, 213, 386, 420
FspBI CTAG 1 cut(s) 20
GluI GCNGC 4 cut(s) 15, 213, 386, 420
Hin1II CATG 4 cut(s) 103, 303, 335, 512
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 2 cut(s) 96, 164
HphI GGTGA 2 cut(s) 479, 497
Hpy166II GTNNAC 2 cut(s) 79, 360
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 6 cut(s) 100, 115, 236, 326, 332, 455
Hpy8I GTNNAC 2 cut(s) 79, 360
HpyAV CCTTC 2 cut(s) 268, 340
HpyCH4III ACNGT 2 cut(s) 131, 529
HpyCH4V TGCA 4 cut(s) 14, 293, 322, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 377
HpyF3I CTNAG 2 cut(s) 168, 342
Hsp92II CATG 4 cut(s) 103, 303, 335, 512
Ksp22I TGATCA 2 cut(s) 328, 334
Kzo9I GATC 5 cut(s) 64, 147, 328, 334, 451
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 8 cut(s) 235, 339, 375, 402, 436, 462, 468, 504
Lsp1109I GCAGC 4 cut(s) 26, 199, 397, 406
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 20
MalI GATC 5 cut(s) 66, 149, 330, 336, 453
MboI GATC 5 cut(s) 64, 147, 328, 334, 451
MboII GAAGA 7 cut(s) 37, 130, 157, 167, 224, 409, 506
MflI RGATCY 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 3 cut(s) 118, 451, 495
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 218, 377
NdeII GATC 5 cut(s) 64, 147, 328, 334, 451
NlaIII CATG 4 cut(s) 103, 303, 335, 512
NlaIV GGNNCC 1 cut(s) 463
NmeAIII GCCGAG 1 cut(s) 166
PagI TCATGA 2 cut(s) 99, 331
PfeI GAWTC 2 cut(s) 96, 164
PkrI GCNGC 4 cut(s) 16, 214, 387, 421
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 4 cut(s) 15, 213, 386, 420
Sau3AI GATC 5 cut(s) 64, 147, 328, 334, 451
ScrFI CCNGG 1 cut(s) 390
SetI ASST 6 cut(s) 110, 232, 253, 289, 451, 484
SfaNI GCATC 1 cut(s) 331
SspI AATATT 1 cut(s) 500
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 131, 529
TfiI GAWTC 2 cut(s) 96, 164
TscAI CASTG 1 cut(s) 136
TseI GCWGC 4 cut(s) 14, 212, 385, 419
TspDTI ATGAA 2 cut(s) 86, 483
TspRI CASTG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.