Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

36488022 .. 36488984

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTGTGAGAGTGCAAAGGTAGATGTTTTAGTGAAAGAGATGGAAGATAGAGGAATTGGTCATAACAGCTACACATTGCGGGTTTTGTTGGGTTCGTATGCAGCGAATTGTGATGTGGAGCGGATGGAGAAGGTTATGATGCTGATGGAAGAAGATGGAGTGGTCAAAATGGACTGGAATGGTTATGTTTTTGCGGCGGATGCTTTTCGGAAGGCTGGACAGGTGGAGAGGGCATTGACATTGCTGGGGACAGCGGAGCAGAAAATCCGTGGCAAGGATGAAAGGAGAATTGCTTACGAGCACCTGATCACATTATATGCTGCTGCTGGTGATAAAAGGCAGGTCTTTCGAATTTGGGGGTTGTACAGAAAGTTGAGGAGGTTCTCCAATAGGGGGTATCATTGTATGATAAGTTCGTTGGTTAAATTGGATGACATTGGTGGTGCCGAGAGGATTTGTAGGGAATGGGAGTCTGGATTCAAGTATTTTGATGGTAAAATACCAAGATTGTTGATCAATGCTTACTGCAGTAAAGGTCTTTTCCAGAAGGCCAAATCATATGTACAGAGGCTTGCAGAGAGTGGAAAGGAGGATGTAAGCACATGGTTGGCTTTGGCTGAGGGATTCTGTTGTTATGGTCGTGTATCAGAGGCAGTGGAAACGATGAGAAAGGCAGCAAGCTTGCCATGTCGACCAGGGTGGAGGATCCATCATTCGACTTTGGTTGGCTGTCTTGATTACTTGAAAGAGAAGGGAGATGTGGAAGGAGCTCATGAGTTGATGAGATTATTGAGAGAAAAGGGTCATCTACGAGCAGACCTGTGTGATAAATTGGAGAACTATATCCATGGGGAAACCCAGATTAAGTCCTTGATATCAGGTCAAGAGGAAAATCATATGGAGGGGCTTGATGGAATTCAGGATGGAGAGGCATCTGATAGTGGAGCTCAACAATGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

320

Amino Acids

36.27

Weight (kDa)

6.76

Isoelectric Point (pI)

21.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	691
AciI	CCGC	5 cut(s)	79, 121, 194, 197, 254
AclWI	GGATC	2 cut(s)	700, 713
AcsI	RAATTY	2 cut(s)	351, 915
AfaI	GTAC	2 cut(s)	365, 564
AfiI	CCNNNNNNNGG	2 cut(s)	274, 393
AgsI	TTSAA	2 cut(s)	481, 745
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	4 cut(s)	69, 681, 770, 947
AluI	AGCT	4 cut(s)	69, 681, 770, 947
Alw21I	GWGCWC	3 cut(s)	303, 772, 949
AlwI	GGATC	2 cut(s)	700, 713
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	4 cut(s)	101, 320, 323, 674
ApoI	RAATTY	2 cut(s)	351, 915
AsuHPI	GGTGA	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	2 cut(s)	772, 949
Bbv12I	GWGCWC	3 cut(s)	303, 772, 949
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	4 cut(s)	113, 307, 310, 686
BccI	CCATC	8 cut(s)	34, 118, 139, 149, 485, 717, 905, 917
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	2 cut(s)	306, 513
BfmI	CTRYAG	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	5 cut(s)	102, 195, 321, 324, 675
BlsI	GCNGC	5 cut(s)	103, 196, 322, 325, 676
Bme1390I	CCNGG	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	445, 707
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	3 cut(s)	129, 190, 941
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	268, 695, 847
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 393
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	74, 239
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	268, 695, 847
BseGI	GGATG	6 cut(s)	129, 205, 283, 436, 598, 928
BseLI	CCNNNNNNNGG	2 cut(s)	274, 393
BseMI	GCAATG	2 cut(s)	74, 239
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	391
BseXI	GCAGC	4 cut(s)	113, 307, 310, 686
BseYI	CCCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	551
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	3 cut(s)	303, 772, 949
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	274, 393
BsmFI	GGGAC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	551
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	303, 772, 949
Bsp1407I	TGTACA	2 cut(s)	363, 562
Bsp143I	GATC	3 cut(s)	306, 513, 705
Bsp19I	CCATGG	1 cut(s)	847
BspACI	CCGC	5 cut(s)	79, 121, 194, 197, 254
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	445, 707
BspMAI	CTGCAG	1 cut(s)	530
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	2 cut(s)	700, 713
BspT104I	TTCGAA	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	2 cut(s)	74, 239
BsrGI	TGTACA	2 cut(s)	363, 562
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	268, 695, 847
BssMI	GATC	3 cut(s)	306, 513, 705
BssT1I	CCWWGG	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	696
BstAUI	TGTACA	2 cut(s)	363, 562
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	573, 679, 683
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	2 cut(s)	268, 847
BstF5I	GGATG	6 cut(s)	129, 205, 283, 436, 598, 928
BstKTI	GATC	3 cut(s)	309, 516, 708
BstMBI	GATC	3 cut(s)	306, 513, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	1 cut(s)	526
BstV1I	GCAGC	4 cut(s)	113, 307, 310, 686
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	551
BtgI	CCRYGG	2 cut(s)	268, 847
BtsCI	GGATG	6 cut(s)	129, 205, 283, 436, 598, 928
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	573, 679, 683
CciI	TCATGA	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	364, 563
CviAII	CATG	4 cut(s)	603, 687, 773, 848
CviQI	GTAC	2 cut(s)	364, 563
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	308, 515, 707
DpnII	GATC	3 cut(s)	306, 513, 705
EciI	GGCGGA	1 cut(s)	212
Ecl136II	GAGCTC	2 cut(s)	770, 947
Eco130I	CCWWGG	1 cut(s)	847
Eco24I	GRGCYC	2 cut(s)	772, 949
Eco32I	GATATC	1 cut(s)	876
Eco53kI	GAGCTC	2 cut(s)	770, 947
EcoICRI	GAGCTC	2 cut(s)	770, 947
EcoRI	GAATTC	1 cut(s)	915
EcoRII	CCWGG	1 cut(s)	694
EcoRV	GATATC	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	847
EcoT38I	GRGCYC	2 cut(s)	772, 949
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	4 cut(s)	606, 690, 776, 851
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	4 cut(s)	602, 686, 772, 847
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	2 cut(s)	559, 897
FbaI	TGATCA	2 cut(s)	306, 513
FblI	GTMKAC	1 cut(s)	691
Fnu4HI	GCNGC	5 cut(s)	102, 195, 321, 324, 675
FokI	GGATG	6 cut(s)	136, 212, 290, 443, 605, 935
FriOI	GRGCYC	2 cut(s)	772, 949
Fsp4HI	GCNGC	5 cut(s)	102, 195, 321, 324, 675
GluI	GCNGC	5 cut(s)	102, 195, 321, 324, 675
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	551
Hin1II	CATG	4 cut(s)	606, 690, 776, 851
HincII	GTYRAC	1 cut(s)	692
HindII	GTYRAC	1 cut(s)	692
HindIII	AAGCTT	1 cut(s)	679
HinfI	GANTC	3 cut(s)	470, 477, 624
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	3 cut(s)	210, 649, 937
Hpy188III	TCNNGA	6 cut(s)	474, 544, 734, 773, 884, 920
Hpy8I	GTNNAC	1 cut(s)	692
HpyAV	CCTTC	5 cut(s)	124, 205, 541, 745, 758
HpyCH4V	TGCA	4 cut(s)	14, 101, 528, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	618
Hsp92II	CATG	4 cut(s)	606, 690, 776, 851
Ksp22I	TGATCA	2 cut(s)	306, 513
Kzo9I	GATC	3 cut(s)	306, 513, 705
LmnI	GCTCC	4 cut(s)	118, 256, 767, 944
Lsp1109I	GCAGC	4 cut(s)	113, 307, 310, 686
LweI	GCATC	3 cut(s)	129, 190, 941
MalI	GATC	3 cut(s)	308, 515, 707
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	306, 513, 705
MboII	GAAGA	3 cut(s)	56, 161, 164
MflI	RGATCY	1 cut(s)	705
MhlI	GDGCHC	3 cut(s)	303, 772, 949
MluCI	AATT	7 cut(s)	54, 106, 288, 351, 425, 830, 915
MlyI	GAGTC	1 cut(s)	479
MseI	TTAA	2 cut(s)	423, 864
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	847
NdeI	CATATG	2 cut(s)	559, 897
NdeII	GATC	3 cut(s)	306, 513, 705
NlaIII	CATG	4 cut(s)	606, 690, 776, 851
NlaIV	GGNNCC	2 cut(s)	445, 707
NmeAIII	GCCGAG	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	349
PagI	TCATGA	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	477, 624
PkrI	GCNGC	5 cut(s)	103, 196, 322, 325, 676
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Psp124BI	GAGCTC	2 cut(s)	772, 949
Psp6I	CCWGG	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	445, 707
PsrI	GAACNNNNNNTAC	2 cut(s)	397, 429
PstI	CTGCAG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	705
RsaI	GTAC	2 cut(s)	365, 564
RsaNI	GTAC	2 cut(s)	364, 563
SacI	GAGCTC	2 cut(s)	772, 949
SalI	GTCGAC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	423, 864
SatI	GCNGC	5 cut(s)	102, 195, 321, 324, 675
Sau3AI	GATC	3 cut(s)	306, 513, 705
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	3 cut(s)	303, 772, 949
SfaNI	GCATC	3 cut(s)	129, 190, 941
SfcI	CTRYAG	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	349
Sse9I	AATT	7 cut(s)	54, 106, 288, 351, 425, 830, 915
SsiI	CCGC	5 cut(s)	79, 121, 194, 197, 254
SstI	GAGCTC	2 cut(s)	772, 949
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	847
TaqI	TCGA	3 cut(s)	349, 691, 716
TasI	AATT	7 cut(s)	54, 106, 288, 351, 425, 830, 915
TatI	WGTACW	2 cut(s)	363, 562
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	477, 624
Tru1I	TTAA	2 cut(s)	423, 864
Tru9I	TTAA	2 cut(s)	423, 864
TscAI	CASTG	1 cut(s)	660
TseI	GCWGC	4 cut(s)	101, 320, 323, 674
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	351, 915
XmiI	GTMKAC	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.