RLG00000023685

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000378
Physical Location & Seq
Forward (+)
27114849 .. 27115412
564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023685

Sequence Viewer

Length: 564 bp
ATGAAAGTATACAACAGGGGTTATCTATGCATAATTACCTCACTCTTGAAGTCTGACGATATTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTGAGCCTGCAGCAAATTATGATATTCGTATCCCAAATACCTTGATTGGTGCTTATACCAGGAATGGTTTTCTTGACAAGGCTGAAGCCATTGTGAGGAGGATAAGATTGAAGTTTGAGATACCTAATCATACGACATGGATTCATTTGGCGAAGGGGTATCTTGATCAAGGTCAAATTGAGAAGGCACTTGAATCGGCAACAAAAGCAGTTTGTGCTGCGCCGCCTGGGTGGATGCCCAACAAGCATGTTGTGGTCGCATGTCTGGAAAAGTTCAAAATGAAAGCAAATCTGGAAGGAGTCGAGGAATTTATAAAACTCCTTGTGGATAAGAATATGCAGGAGAGATTGTTGAATCATATCAAAAATGAGAATTCAACTACTGCTGTAGTAGGCGATTGGAATGGGATTGTCCAAAGGTGGATGAAGAAACAAGTGAAACTTTCAGTGGTGGAATCTAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

8.68

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AccI GTMKAC 1 cut(s) 9
AciI CCGC 1 cut(s) 320
AcsI RAATTY 2 cut(s) 404, 469
AcuI CTGAAG 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 7 cut(s) 49, 86, 208, 290, 373, 451, 474
AjnI CCWGG 2 cut(s) 155, 322
ApeKI GCWGC 2 cut(s) 107, 314
ApoI RAATTY 2 cut(s) 404, 469
AspLEI GCGC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 119, 301
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 2 cut(s) 157, 324
BciVI GTATCC 1 cut(s) 137
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 2 cut(s) 105, 483
BfuI GTATCC 1 cut(s) 137
BglII AGATCT 1 cut(s) 78
BisI GCNGC 3 cut(s) 108, 315, 320
BlsI GCNGC 3 cut(s) 109, 316, 321
Bme1390I CCNGG 2 cut(s) 157, 324
BmrFI CCNGG 2 cut(s) 157, 324
BmsI GCATC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 157, 324
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 336, 525
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 119, 301
BslI CCNNNNNNNGG 1 cut(s) 192
Bsp143I GATC 2 cut(s) 78, 262
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 2 cut(s) 78, 262
BssNAI GTATAC 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 157, 324
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 336, 525
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 81, 265
BstMBI GATC 2 cut(s) 78, 262
BstMWI GCNNNNNNNGC 3 cut(s) 302, 311, 340
BstNI CCWGG 2 cut(s) 157, 324
BstNSI RCATGY 2 cut(s) 347, 360
BstSCI CCNGG 2 cut(s) 155, 322
BstSFI CTRYAG 2 cut(s) 105, 483
BstV1I GCAGC 2 cut(s) 119, 301
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BstZ17I GTATAC 1 cut(s) 10
BsuI GTATCC 1 cut(s) 137
BtsCI GGATG 2 cut(s) 336, 525
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 319
CviAII CATG 3 cut(s) 234, 344, 357
CviJI RGCY 3 cut(s) 103, 179, 185
CviKI_1 RGCY 3 cut(s) 103, 179, 185
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 80, 264
DpnII GATC 2 cut(s) 78, 262
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 2 cut(s) 155, 322
EcoT22I ATGCAT 1 cut(s) 32
FaeI CATG 3 cut(s) 237, 347, 360
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FatI CATG 3 cut(s) 233, 343, 356
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 3 cut(s) 108, 315, 320
FokI GGATG 2 cut(s) 343, 532
Fsp4HI GCNGC 3 cut(s) 108, 315, 320
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 108, 315, 320
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 237, 347, 360
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 6 cut(s) 95, 238, 290, 396, 451, 551
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 55, 100
Hpy188III TCNNGA 5 cut(s) 46, 170, 260, 362, 389
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 244, 274, 386
HpyCH4V TGCA 3 cut(s) 30, 107, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 311, 340
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 3 cut(s) 237, 347, 360
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 78, 262
LpnPI CCDG 8 cut(s) 117, 142, 169, 309, 336, 347, 374, 422
Lsp1109I GCAGC 2 cut(s) 119, 301
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 555
MalI GATC 2 cut(s) 80, 264
MboI GATC 2 cut(s) 78, 262
MboII GAAGA 3 cut(s) 88, 98, 535
MflI RGATCY 1 cut(s) 78
MluCI AATT 5 cut(s) 33, 112, 273, 404, 469
MlyI GAGTC 1 cut(s) 405
MnlI CCTC 4 cut(s) 49, 186, 189, 394
Mph1103I ATGCAT 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 157, 324
MvaI CCWGG 2 cut(s) 157, 324
MwoI GCNNNNNNNGC 3 cut(s) 302, 311, 340
NdeII GATC 2 cut(s) 78, 262
NlaIII CATG 3 cut(s) 237, 347, 360
NmeAIII GCCGAG 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 32
NspI RCATGY 2 cut(s) 347, 360
PfeI GAWTC 5 cut(s) 95, 238, 290, 451, 551
PkrI GCNGC 3 cut(s) 109, 316, 321
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PsiI TTATAA 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 155, 322
PspGI CCWGG 2 cut(s) 155, 322
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 78
SatI GCNGC 3 cut(s) 108, 315, 320
Sau3AI GATC 2 cut(s) 78, 262
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 157, 324
SetI ASST 5 cut(s) 41, 140, 223, 271, 518
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 2 cut(s) 105, 483
Sse9I AATT 5 cut(s) 33, 112, 273, 404, 469
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 155, 322
TaqI TCGA 1 cut(s) 399
TasI AATT 5 cut(s) 33, 112, 273, 404, 469
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 5 cut(s) 95, 238, 290, 451, 551
TscAI CASTG 1 cut(s) 549
TseI GCWGC 2 cut(s) 107, 314
TspDTI ATGAA 4 cut(s) 17, 230, 392, 536
TspRI CASTG 1 cut(s) 549
XapI RAATTY 2 cut(s) 404, 469
XceI RCATGY 2 cut(s) 347, 360
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 1 cut(s) 555
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.