Rmu_co8189010.1_g000001

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8189010.1
OG0000378
Physical Location & Seq
Reverse (-)
84 .. 623
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8189010.1_g000001.1.cds

Sequence Viewer

Length: 540 bp
atgacctcactcttgaagactgatgacattgagagtgctgaaaagatctatgaagagtgggaatctgagcaagcgatatatgatattcgtatacccaataccttgattggtgcttataccaggaaaggttttcttgacaaggctgaagccattatgagcaggataagattgaaggatgggaaccctaatcctacaaggtggatttatttggcgaaaatgtatattgatcaaggtcaaattgataaggcacttgaatcggcaaaaaaagcagtttctgctgcacagccagggggggtgccggacaaggatgttgtgatcgcatgtctggaatacttcaaaatgaaagcagatctggaaggagccgaggaatttataaaattccttggggataagaatattattcccgtaaatacgcaggagagattgttgaatcatataaaaaatgtgaattcaactgctgtagtaggtgaaatggaatgggattgtccaaagggggatgaagaaccaagtgaacttacagaggtggaatctgggcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

179

Amino Acids

20.13

Weight (kDa)

4.67

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 295
AccI GTMKAC 1 cut(s) 91
AcsI RAATTY 3 cut(s) 368, 377, 448
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 6 cut(s) 16, 172, 254, 337, 430, 453
AjnI CCWGG 2 cut(s) 119, 286
AlwNI CAGNNNCTG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 3 cut(s) 368, 377, 448
AsuHPI GGTGA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 2 cut(s) 121, 288
BclI TGATCA 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 459
BglII AGATCT 2 cut(s) 45, 349
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 121, 288
BmiI GGNNCC 3 cut(s) 182, 297, 361
BmrFI CCNGG 2 cut(s) 121, 288
BpiI GAAGAC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 287, 363, 382
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
BseBI CCWGG 2 cut(s) 121, 288
BseDI CCNNGG 3 cut(s) 287, 363, 382
BseGI GGATG 3 cut(s) 181, 313, 502
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 299
Bsp143I GATC 4 cut(s) 45, 226, 315, 349
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 182, 297, 361
BspT107I GGYRCC 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 287, 363, 382
BssMI GATC 4 cut(s) 45, 226, 315, 349
BssNAI GTATAC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 382
Bst1107I GTATAC 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 121, 288
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 181, 313, 502
BstKTI GATC 4 cut(s) 48, 229, 318, 352
BstMBI GATC 4 cut(s) 45, 226, 315, 349
BstMWI GCNNNNNNNGC 2 cut(s) 266, 275
BstNI CCWGG 2 cut(s) 121, 288
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 119, 286
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 45, 349
BstYI RGATCY 2 cut(s) 45, 349
BstZ17I GTATAC 1 cut(s) 92
BtsCI GGATG 3 cut(s) 181, 313, 502
Cac8I GCNNGC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 275
CviAII CATG 1 cut(s) 321
CviJI RGCY 4 cut(s) 143, 149, 286, 362
CviKI_1 RGCY 4 cut(s) 143, 149, 286, 362
DdeI CTNAG 1 cut(s) 66
DpnI GATC 4 cut(s) 47, 228, 317, 351
DpnII GATC 4 cut(s) 45, 226, 315, 349
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 119, 286
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 1 cut(s) 324
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 1 cut(s) 320
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 3 cut(s) 188, 320, 509
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HapII CCGG 1 cut(s) 299
Hin1II CATG 1 cut(s) 324
HinfI GANTC 4 cut(s) 62, 254, 430, 527
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 2 cut(s) 92, 512
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 4 cut(s) 13, 134, 326, 353
Hpy8I GTNNAC 2 cut(s) 92, 512
HpyAV CCTTC 2 cut(s) 166, 350
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 275
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 4 cut(s) 45, 226, 315, 349
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 1 cut(s) 265
MalI GATC 4 cut(s) 47, 228, 317, 351
MboI GATC 4 cut(s) 45, 226, 315, 349
MboII GAAGA 3 cut(s) 28, 65, 512
MflI RGATCY 2 cut(s) 45, 349
MluCI AATT 4 cut(s) 237, 368, 377, 448
MnlI CCTC 3 cut(s) 16, 358, 514
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 121, 288
MvaI CCWGG 2 cut(s) 121, 288
MwoI GCNNNNNNNGC 2 cut(s) 266, 275
NdeII GATC 4 cut(s) 45, 226, 315, 349
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 3 cut(s) 182, 297, 361
NmeAIII GCCGAG 1 cut(s) 388
NspI RCATGY 1 cut(s) 324
PfeI GAWTC 4 cut(s) 62, 254, 430, 527
PkrI GCNGC 1 cut(s) 280
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 119, 286
PspGI CCWGG 2 cut(s) 119, 286
PspN4I GGNNCC 3 cut(s) 182, 297, 361
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 45, 349
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 45, 226, 315, 349
ScrFI CCNGG 2 cut(s) 121, 288
SetI ASST 7 cut(s) 8, 104, 130, 200, 235, 469, 525
SfcI CTRYAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 237, 368, 377, 448
SspI AATATT 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 119, 286
StyI CCWWGG 1 cut(s) 382
TasI AATT 4 cut(s) 237, 368, 377, 448
TfiI GAWTC 4 cut(s) 62, 254, 430, 527
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 3 cut(s) 66, 356, 513
XapI RAATTY 3 cut(s) 368, 377, 448
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.