Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

36104535 .. 36105275

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGAGGGCATTGACATTGCTGGGGACAGCGGAGCAGAAAATCCGTGGCAAGGAGGAAAGGAGAATTGCTTACGAGCACCTGATCACATTATATGCTGCTGCTGGTGATAAAAGGCAGGTCTTTCGAATTTGGGGGTTGTACAGAAAGTTGAGGAGGTTCTCCAATAGGGGGTATCATACAATGATAAGTTCGTTGGTTAAATTGGATGACATTGGTGGTGCCGAGAGGATTTGTAGGGAATGGGAGTCTGGATTCAAGTATTTTGATGGTAAAATACCCAGATTGTTGATCAATGCTTACTGCAGTAAAGGTCTTTTCCAGAAGGCCAAATCATATGTACAGAGGCTTGCAGAGAGTGGAAAGGAAGATGCAAGCACATGGTTGGCTTTGGCTGAGGGATTCTGTTGTTATGGTCGTGTATCAGAGGCAGTGGAAACGATGAGAAAGGCAGCAAGCTTGCCATGTCGACCAGGATGGAGGATCCATCAGTCGACTTTGGTTGGCTGTCTTGATTACTTGAAAGAGAAGGGAGATGTGGAAGGAGCTCATGAGTTGATGAGATTATTGAGAGAAAAGGGTCATCTACGAGCAGACCTGTGTGATAAATTTGAGAACTATATCCATGGGGAAACCCAGATTGAGTCCTTAATATCAGGTCAAGAGGAAAATCATATGGAGGGGCTTGATGGAATTCAGGATGGAGAGGCATCTGATAGTGGAGCTCAACAATGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

246

Amino Acids

27.97

Weight (kDa)

7.61

Isoelectric Point (pI)

25.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	469, 494
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	478, 491
AcsI	RAATTY	3 cut(s)	129, 608, 693
AfaI	GTAC	2 cut(s)	143, 342
AfiI	CCNNNNNNNGG	2 cut(s)	52, 171
AgsI	TTSAA	2 cut(s)	259, 523
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	3 cut(s)	459, 548, 725
AluI	AGCT	3 cut(s)	459, 548, 725
Alw21I	GWGCWC	3 cut(s)	81, 550, 727
AlwI	GGATC	2 cut(s)	478, 491
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	98, 101, 452
ApoI	RAATTY	3 cut(s)	129, 608, 693
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	550, 727
Bbv12I	GWGCWC	3 cut(s)	81, 550, 727
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	85, 88, 464
BccI	CCATC	5 cut(s)	263, 471, 495, 683, 695
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	2 cut(s)	84, 291
BfmI	CTRYAG	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	3 cut(s)	99, 102, 453
BlsI	GCNGC	3 cut(s)	100, 103, 454
Bme1390I	CCNGG	1 cut(s)	474
BmiI	GGNNCC	2 cut(s)	223, 485
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	361, 719
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	46, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 171
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	46, 625
BseGI	GGATG	3 cut(s)	214, 482, 706
BseLI	CCNNNNNNNGG	2 cut(s)	52, 171
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	85, 88, 464
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	3 cut(s)	81, 550, 727
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	52, 171
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	81, 550, 727
Bsp1407I	TGTACA	2 cut(s)	141, 340
Bsp143I	GATC	3 cut(s)	84, 291, 483
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	223, 485
BspMAI	CTGCAG	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	478, 491
BspT104I	TTCGAA	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	17
BsrGI	TGTACA	2 cut(s)	141, 340
BssECI	CCNNGG	2 cut(s)	46, 625
BssMI	GATC	3 cut(s)	84, 291, 483
BssT1I	CCWWGG	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	474
BstAUI	TGTACA	2 cut(s)	141, 340
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	4 cut(s)	351, 376, 457, 461
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	2 cut(s)	46, 625
BstF5I	GGATG	3 cut(s)	214, 482, 706
BstKTI	GATC	3 cut(s)	87, 294, 486
BstMBI	GATC	3 cut(s)	84, 291, 483
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	85, 88, 464
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	2 cut(s)	46, 625
BtsCI	GGATG	3 cut(s)	214, 482, 706
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	4 cut(s)	351, 376, 457, 461
CciI	TCATGA	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	142, 341
CviAII	CATG	4 cut(s)	381, 465, 551, 626
CviJI	RGCY	9 cut(s)	329, 349, 389, 395, 459, 507, 548, 685, 725
CviKI_1	RGCY	9 cut(s)	329, 349, 389, 395, 459, 507, 548, 685, 725
CviQI	GTAC	2 cut(s)	142, 341
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	86, 293, 485
DpnII	GATC	3 cut(s)	84, 291, 483
Ecl136II	GAGCTC	2 cut(s)	548, 725
Eco130I	CCWWGG	1 cut(s)	625
Eco24I	GRGCYC	2 cut(s)	550, 727
Eco53kI	GAGCTC	2 cut(s)	548, 725
EcoICRI	GAGCTC	2 cut(s)	548, 725
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	625
EcoT38I	GRGCYC	2 cut(s)	550, 727
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	4 cut(s)	384, 468, 554, 629
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	380, 464, 550, 625
FauNDI	CATATG	2 cut(s)	337, 675
FbaI	TGATCA	2 cut(s)	84, 291
FblI	GTMKAC	2 cut(s)	469, 494
Fnu4HI	GCNGC	3 cut(s)	99, 102, 453
FokI	GGATG	3 cut(s)	221, 489, 713
FriOI	GRGCYC	2 cut(s)	550, 727
Fsp4HI	GCNGC	3 cut(s)	99, 102, 453
GluI	GCNGC	3 cut(s)	99, 102, 453
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	329
Hin1II	CATG	4 cut(s)	384, 468, 554, 629
HincII	GTYRAC	2 cut(s)	470, 495
HindII	GTYRAC	2 cut(s)	470, 495
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	4 cut(s)	248, 255, 402, 644
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	470, 495
Hpy188I	TCNGA	2 cut(s)	427, 715
Hpy188III	TCNNGA	6 cut(s)	252, 322, 512, 551, 662, 698
Hpy8I	GTNNAC	2 cut(s)	470, 495
HpyAV	CCTTC	3 cut(s)	319, 523, 536
HpyCH4V	TGCA	3 cut(s)	306, 353, 374
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	384, 468, 554, 629
Ksp22I	TGATCA	2 cut(s)	84, 291
Kzo9I	GATC	3 cut(s)	84, 291, 483
LmnI	GCTCC	3 cut(s)	34, 545, 722
Lsp1109I	GCAGC	3 cut(s)	85, 88, 464
LweI	GCATC	2 cut(s)	361, 719
MalI	GATC	3 cut(s)	86, 293, 485
MboI	GATC	3 cut(s)	84, 291, 483
MboII	GAAGA	1 cut(s)	380
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	3 cut(s)	81, 550, 727
MluCI	AATT	5 cut(s)	66, 129, 203, 608, 693
MlyI	GAGTC	2 cut(s)	257, 653
MseI	TTAA	2 cut(s)	201, 650
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	625
NdeI	CATATG	2 cut(s)	337, 675
NdeII	GATC	3 cut(s)	84, 291, 483
NlaIII	CATG	4 cut(s)	384, 468, 554, 629
NlaIV	GGNNCC	2 cut(s)	223, 485
NmeAIII	GCCGAG	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	127
PagI	TCATGA	1 cut(s)	550
PfeI	GAWTC	2 cut(s)	255, 402
PkrI	GCNGC	3 cut(s)	100, 103, 454
PleI	GAGTC	2 cut(s)	256, 652
PpsI	GAGTC	2 cut(s)	256, 652
Psp124BI	GAGCTC	2 cut(s)	550, 727
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	223, 485
PstI	CTGCAG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	2 cut(s)	143, 342
RsaNI	GTAC	2 cut(s)	142, 341
SacI	GAGCTC	2 cut(s)	550, 727
SalI	GTCGAC	2 cut(s)	468, 493
SaqAI	TTAA	2 cut(s)	201, 650
SatI	GCNGC	3 cut(s)	99, 102, 453
Sau3AI	GATC	3 cut(s)	84, 291, 483
SchI	GAGTC	2 cut(s)	257, 653
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	3 cut(s)	81, 550, 727
SetI	ASST	9 cut(s)	84, 123, 161, 316, 461, 550, 600, 661, 727
SfaNI	GCATC	2 cut(s)	361, 719
SfcI	CTRYAG	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	127
Sse9I	AATT	5 cut(s)	66, 129, 203, 608, 693
SsiI	CCGC	1 cut(s)	32
SstI	GAGCTC	2 cut(s)	550, 727
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	625
TaqI	TCGA	3 cut(s)	127, 469, 494
TasI	AATT	5 cut(s)	66, 129, 203, 608, 693
TatI	WGTACW	2 cut(s)	141, 340
TfiI	GAWTC	2 cut(s)	255, 402
Tru1I	TTAA	2 cut(s)	201, 650
Tru9I	TTAA	2 cut(s)	201, 650
TscAI	CASTG	1 cut(s)	438
TseI	GCWGC	3 cut(s)	98, 101, 452
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	438
XapI	RAATTY	3 cut(s)	129, 608, 693
XmiI	GTMKAC	2 cut(s)	469, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.