Rorug03G0163500

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000378
Physical Location & Seq
Reverse (-)
13620228 .. 13622940
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0163500.1

Sequence Viewer

Length: 843 bp
ATGACTACCTCTACGGCTTCGCTGGTTCTTCCTTCCCTGACCCCCAAAACCCTAGCCCTCTACACCCCCAAACCCACTTCGCTCTCGCTCTTCTCTCTGACCTTCTCGTCCCTAAAACCCGTTTCGATTTCGGCCTCATTTCTCAGCTCCGGCAAGGGGTTTCAGTCGTCTCGGTCGGTCGTGCGACGCGTCGCTGTTTCGGACTTCGAGCAGGATGAGGAGGTTCTCAGCGACGACGGCGGCGGCGGCGAGCCCAATTTCTCGCCTGACCTCAAGCTCTTCGTCGGAAACCTTCCCTTCACCGTCGACAGTGCTCAGCTAGCTGAGCTCTTCGAAGGTGCTGGAAATGTTGAGATGGTCGAGGTGATATATGACAAGGCGACTGGGAGAAGCAGGGGATTTGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTTGAAGCAGCTGCTCGACAGTTCAATGGCTATGAACTTGACGGAAGGGCATTGAGGGTAAACTATGGACCTCCCCCGCCTAGGTCTGAGGATTCTTTCAGAGGTGCCAGAGGTCCCCCCAGAGGTGGTGGAGGTTATGGTGACTCTTCCAACCGCCTTTATGTGGGTAACCTTGCATGGGGTGTTGACAATTTGGCACTTGAGAACTTGTTTAATGAGCAAGGAAAGGTTTTGGAGGCCAAGGTAGTTTTTGACAGGGACAGTGGCCGGTCGAGGGGTTTTGGTTTTGTGACATATGGTTCCGCTGAAGAAATGAACAGTGCCATTGAGTCTTTGGATGGCGTTGACTTGGGTGGAAGATCTATTCGCGTAACTGCGGCAGAACCTAGGCCGCCAAGGCGTCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

280

Amino Acids

29.99

Weight (kDa)

5.07

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 93 - 163 3.6e-19 RNA recognition motif
RRM_1 PF00076 197 - 267 4.1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 306
AccII CGCG 2 cut(s) 189, 801
AciI CCGC 8 cut(s) 240, 243, 246, 509, 586, 735, 809, 824
AcoI YGGCCR 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 832
AfiI CCNNNNNNNGG 7 cut(s) 156, 513, 554, 557, 595, 610, 706
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 2 cut(s) 437, 457
AluBI AGCT 6 cut(s) 147, 277, 319, 323, 328, 443
AluI AGCT 6 cut(s) 147, 277, 319, 323, 328, 443
Alw21I GWGCWC 3 cut(s) 316, 330, 427
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 4 cut(s) 132, 669, 697, 821
ApeKI GCWGC 2 cut(s) 440, 443
AspA2I CCTAGG 2 cut(s) 512, 818
AspS9I GGNCC 2 cut(s) 500, 545
AsuHPI GGTGA 3 cut(s) 292, 376, 584
AsuII TTCGAA 1 cut(s) 333
AsuNHI GCTAGC 1 cut(s) 319
AvaII GGWCC 2 cut(s) 500, 545
AvrII CCTAGG 2 cut(s) 512, 818
BanI GGYRCC 1 cut(s) 536
BanII GRGCYC 2 cut(s) 255, 330
Bbv12I GWGCWC 3 cut(s) 316, 330, 427
BbvI GCAGC 2 cut(s) 430, 452
BccI CCATC 2 cut(s) 349, 764
BceAI ACGGC 2 cut(s) 30, 253
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 4 cut(s) 53, 320, 513, 819
BglI GCCNNNNNGGC 1 cut(s) 829
BglII AGATCT 1 cut(s) 791
BisI GCNGC 7 cut(s) 241, 244, 247, 441, 444, 810, 824
BlnI CCTAGG 2 cut(s) 512, 818
BlpI GCTNAGC 2 cut(s) 315, 324
BlsI GCNGC 7 cut(s) 242, 245, 248, 442, 445, 811, 825
Bme18I GGWCC 2 cut(s) 500, 545
BmgT120I GGNCC 2 cut(s) 500, 545
BmiI GGNNCC 3 cut(s) 538, 547, 733
BmrI ACTGGG 1 cut(s) 393
BmtI GCTAGC 1 cut(s) 323
BmuI ACTGGG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 426
Bpu1102I GCTNAGC 2 cut(s) 315, 324
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 257, 653
BsaHI GRCGYC 1 cut(s) 832
BsaJI CCNNGG 4 cut(s) 512, 672, 818, 827
Bsc4I CCNNNNNNNGG 7 cut(s) 156, 513, 554, 557, 595, 610, 706
Bse118I RCCGGY 1 cut(s) 699
Bse1I ACTGG 1 cut(s) 388
BseDI CCNNGG 4 cut(s) 512, 672, 818, 827
BseGI GGATG 2 cut(s) 220, 775
BseLI CCNNNNNNNGG 7 cut(s) 156, 513, 554, 557, 595, 610, 706
BseMII CTCAG 6 cut(s) 157, 241, 315, 329, 440, 510
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 430, 452
Bsh1236I CGCG 2 cut(s) 189, 801
Bsh1285I CGRYCG 3 cut(s) 176, 180, 704
BshFI GGCC 4 cut(s) 134, 671, 699, 823
BshNI GGYRCC 1 cut(s) 536
BsiEI CGRYCG 3 cut(s) 176, 180, 704
BsiHKAI GWGCWC 3 cut(s) 316, 330, 427
BsiSI CCGG 2 cut(s) 150, 700
BslFI GGGAC 3 cut(s) 94, 531, 704
BslI CCNNNNNNNGG 7 cut(s) 156, 513, 554, 557, 595, 610, 706
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 3 cut(s) 94, 531, 704
BsnI GGCC 4 cut(s) 134, 671, 699, 823
Bsp119I TTCGAA 1 cut(s) 333
Bsp1286I GDGCHC 4 cut(s) 255, 316, 330, 427
Bsp143I GATC 1 cut(s) 791
Bsp1720I GCTNAGC 2 cut(s) 315, 324
BspACI CCGC 8 cut(s) 240, 243, 246, 509, 586, 735, 809, 824
BspANI GGCC 4 cut(s) 134, 671, 699, 823
BspCNI CTCAG 6 cut(s) 156, 240, 316, 328, 439, 511
BspFNI CGCG 2 cut(s) 189, 801
BspLI GGNNCC 3 cut(s) 538, 547, 733
BspOI GCTAGC 1 cut(s) 323
BspQI GCTCTTC 3 cut(s) 95, 284, 335
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 699
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 699
BssECI CCNNGG 4 cut(s) 512, 672, 818, 827
BssMI GATC 1 cut(s) 791
BssNI GRCGYC 1 cut(s) 832
BssT1I CCWWGG 4 cut(s) 512, 672, 818, 827
Bst4CI ACNGT 5 cut(s) 304, 311, 453, 695, 752
Bst6I CTCTTC 4 cut(s) 95, 284, 335, 583
BstACI GRCGYC 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 251, 321
BstDEI CTNAG 6 cut(s) 143, 227, 315, 324, 426, 519
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 2 cut(s) 220, 775
BstFNI CGCG 2 cut(s) 189, 801
BstKTI GATC 1 cut(s) 794
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 791
BstMCI CGRYCG 3 cut(s) 176, 180, 704
BstMWI GCNNNNNNNGC 5 cut(s) 237, 246, 320, 325, 829
BstPI GGTNACC 1 cut(s) 599
BstUI CGCG 2 cut(s) 189, 801
BstV1I GCAGC 2 cut(s) 430, 452
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 4 cut(s) 134, 671, 699, 823
BtsCI GGATG 2 cut(s) 220, 775
BtsIMutI CAGTG 3 cut(s) 316, 700, 757
Cac8I GCNNGC 2 cut(s) 251, 321
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 2 cut(s) 500, 545
CseI GACGC 3 cut(s) 178, 195, 821
CviAII CATG 2 cut(s) 415, 609
DdeI CTNAG 6 cut(s) 143, 227, 315, 324, 426, 519
DpnI GATC 1 cut(s) 793
DpnII GATC 1 cut(s) 791
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 4 cut(s) 95, 284, 335, 583
EarI CTCTTC 4 cut(s) 95, 284, 335, 583
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 4 cut(s) 512, 672, 818, 827
Eco24I GRGCYC 2 cut(s) 255, 330
Eco47I GGWCC 2 cut(s) 500, 545
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 599
EcoT14I CCWWGG 4 cut(s) 512, 672, 818, 827
EcoT38I GRGCYC 2 cut(s) 255, 330
ErhI CCWWGG 4 cut(s) 512, 672, 818, 827
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 2 cut(s) 418, 612
FaqI GGGAC 3 cut(s) 94, 531, 704
FatI CATG 2 cut(s) 414, 608
FauI CCCGC 1 cut(s) 516
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 7 cut(s) 241, 244, 247, 441, 444, 810, 824
FokI GGATG 2 cut(s) 227, 782
FriOI GRGCYC 2 cut(s) 255, 330
Fsp4HI GCNGC 7 cut(s) 241, 244, 247, 441, 444, 810, 824
FspBI CTAG 4 cut(s) 53, 320, 513, 819
GluI GCNGC 7 cut(s) 241, 244, 247, 441, 444, 810, 824
HaeIII GGCC 4 cut(s) 134, 671, 699, 823
HapII CCGG 2 cut(s) 150, 700
HgaI GACGC 3 cut(s) 178, 195, 821
Hin1I GRCGYC 1 cut(s) 832
Hin1II CATG 2 cut(s) 418, 612
HincII GTYRAC 3 cut(s) 307, 619, 778
HindII GTYRAC 3 cut(s) 307, 619, 778
HinfI GANTC 3 cut(s) 524, 575, 761
HpaII CCGG 2 cut(s) 150, 700
HphI GGTGA 3 cut(s) 292, 376, 584
Hpy166II GTNNAC 4 cut(s) 307, 493, 619, 778
Hpy188I TCNGA 5 cut(s) 99, 202, 287, 520, 533
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 4 cut(s) 307, 493, 619, 778
Hpy99I CGWCG 6 cut(s) 189, 194, 236, 239, 287, 308
HpyAV CCTTC 6 cut(s) 42, 112, 302, 307, 329, 471
HpyCH4III ACNGT 5 cut(s) 304, 311, 453, 695, 752
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 237, 246, 320, 325, 829
HpyF3I CTNAG 6 cut(s) 143, 227, 315, 324, 426, 519
Hsp92I GRCGYC 1 cut(s) 832
Hsp92II CATG 2 cut(s) 418, 612
Kzo9I GATC 1 cut(s) 791
LguI GCTCTTC 3 cut(s) 95, 284, 335
LmnI GCTCC 1 cut(s) 152
Lsp1109I GCAGC 2 cut(s) 430, 452
MaeI CTAG 4 cut(s) 53, 320, 513, 819
MaeIII GTNAC 5 cut(s) 409, 572, 599, 721, 802
MalI GATC 1 cut(s) 793
MboI GATC 1 cut(s) 791
MboII GAAGA 7 cut(s) 20, 82, 271, 322, 570, 752, 801
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 4 cut(s) 255, 316, 330, 427
MluCI AATT 3 cut(s) 256, 622, 836
MluI ACGCGT 1 cut(s) 187
MlyI GAGTC 2 cut(s) 569, 770
MmeI TCCRAC 2 cut(s) 265, 606
MseI TTAA 1 cut(s) 645
MspA1I CMGCKG 2 cut(s) 443, 737
MspI CCGG 2 cut(s) 150, 700
MvnI CGCG 2 cut(s) 189, 801
MwoI GCNNNNNNNGC 5 cut(s) 237, 246, 320, 325, 829
NdeI CATATG 1 cut(s) 727
NdeII GATC 1 cut(s) 791
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 2 cut(s) 418, 612
NlaIV GGNNCC 3 cut(s) 538, 547, 733
NmuCI GTSAC 3 cut(s) 409, 572, 721
NspV TTCGAA 1 cut(s) 333
PciSI GCTCTTC 3 cut(s) 95, 284, 335
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 1 cut(s) 524
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 7 cut(s) 242, 245, 248, 442, 445, 811, 825
PleI GAGTC 2 cut(s) 569, 769
PpsI GAGTC 2 cut(s) 569, 769
PpuMI RGGWCCY 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 599
PspN4I GGNNCC 3 cut(s) 538, 547, 733
PspPI GGNCC 2 cut(s) 500, 545
PspPPI RGGWCCY 1 cut(s) 545
PsuI RGATCY 1 cut(s) 791
PsyI GACNNNGTC 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 305
SapI GCTCTTC 3 cut(s) 95, 284, 335
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 7 cut(s) 241, 244, 247, 441, 444, 810, 824
Sau3AI GATC 1 cut(s) 791
Sau96I GGNCC 2 cut(s) 500, 545
SchI GAGTC 2 cut(s) 569, 770
SduI GDGCHC 4 cut(s) 255, 316, 330, 427
SfuI TTCGAA 1 cut(s) 333
SinI GGWCC 2 cut(s) 500, 545
SmlI CTYRAG 2 cut(s) 272, 632
SmoI CTYRAG 2 cut(s) 272, 632
Sse9I AATT 3 cut(s) 256, 622, 836
SsiI CCGC 8 cut(s) 240, 243, 246, 509, 586, 735, 809, 824
SspMI CTAG 4 cut(s) 53, 320, 513, 819
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 4 cut(s) 512, 672, 818, 827
TaaI ACNGT 5 cut(s) 304, 311, 453, 695, 752
TaqI TCGA 8 cut(s) 125, 207, 306, 333, 360, 419, 448, 704
TaqII GACCGA 2 cut(s) 162, 166
TasI AATT 3 cut(s) 256, 622, 836
TauI GCSGC 5 cut(s) 243, 246, 249, 812, 826
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 3 cut(s) 316, 700, 757
TseFI GTSAC 3 cut(s) 409, 572, 721
TseI GCWGC 2 cut(s) 440, 443
Tsp45I GTSAC 3 cut(s) 409, 572, 721
TspDTI ATGAA 2 cut(s) 480, 761
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 3 cut(s) 316, 700, 757
Tth111I GACNNNGTC 1 cut(s) 415
VpaK11BI GGWCC 2 cut(s) 500, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XmaJI CCTAGG 2 cut(s) 512, 818
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 4 cut(s) 53, 320, 513, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.