Rroxscaffold_6G00403650

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000378
Physical Location & Seq
Forward (+)
26123919 .. 26126333
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403650.1

Sequence Viewer

Length: 1455 bp
ATGATGAAGCACTCACATTTCAGCGCCCTATTCAACACTCTCTACTGCCGTTTCTGTCACGTTTCGCCGTACTCAACGGCGGCACCCAAATCTCATCGGAAGCTCTGGAAGGACTCGCTGAACATACTCTACCGTCGGATCTGCAAGAGCGGTTTTCAGGCCTCCGATTTACCGATTCTGTACCAGTGGGGCCAAGAAGGCCAAACGCTAGATAGAGATGACCGCGTCACTATCATCAAGGAGCTCAGGTGTCCCATGTGGATGAGTGATGCTGCACTTTTGCCCTCTGACGTAGCCATCCGGCTCGACTTGATTGCAAGAGTTCAAGGAATAGAAGAAGCTGAGAATTATTTTAACTACACTCCCAAAAAATTGAAAGGCCTTCAGGTTTACCATGCTCTCCTCAACTGCTATGCTCGTGCAAAACAGTTGGAAAAAGCAGAGGCCACCATGCAGAAGATGAGGGATTTGGGGTTCTCTAGGACGTCATTGTCATACAATGTTTTGCTCAATTTGTATTATAAGACTGGACACCGTGCAAAATTTGACGGTCTGATGAGTGAAATGGAAGAGAATGGCATCGGTTTTGACAGATTCACATATGGGATCAGACTCAGTGCAGCTGCAGCTGCTTCTGATCTCGAGGGAATTGACAAGATTCTGGCAGAATACGAATCCGATCCTAAGAGTCTTGTGAACTGGACTACTTATGCCGTTGCAGCAAGTGGTTATACAAAAGCAGGAGCTGTGGACAAGGCTTTAGCAATGCTAAAGAGATCAGAGGAACAGATACCAAGTTCTAAAAGACTGAGGCCAGCATATGAGCAACTTATGACGCAGGGTTATCTATGCATAATTACCTCACTCTTGAAGTCTGATGATATTGAGAGTGCTGAGAAGATCTTTGAAGAGTGGGAATCTGAGCCTGCAAACTATGATATTCGTATCCCAAATAGCTTGATTGGTGCTTATACCAGGAATGGTTTTCTTGACAAGGCTGAAGCCATTCTGAGCAGGATAAGATTGAAGGATGGGAAACCTAATCATTCGACATGGATTTATTTGGCGAAGGGGTATCTTGATCAAGGTCAAATTGAGAAGGCACTTGAATCGGCAACAAAAGCAGTTTCTGCTGCTCCGCCAGGGTGGATGCCGAAAAAGCATGTTGTGGTCGCATGTCTGGAAAACTTCAAACTGAAAGCAGATCTGGAAGGAGCCAAGGAATTCATAAAACTCGTTGTGGATAAGAATATGCAGGAGAGATTGTTGAATCATAAGAATATGCAGGAGGCATTGTTGAATCATATCAAAAATGAGAAATCGACTGCTGTAGTAGGCGATTGGAATGGGCTTGTCCAAAGGTCAGTACCTGAAGATTTCAATGATGCAATCAGCTGCCTTCTTCTTACTCAACGGAGGAGAAATAATCGTTGCCCTATTCGTCTTCTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

484

Amino Acids

55.0

Weight (kDa)

8.8

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 163 - 206 7.6e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 490
AatII GACGTC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 150
AccII CGCG 1 cut(s) 225
AciI CCGC 4 cut(s) 80, 150, 223, 1139
AclWI GGATC 3 cut(s) 146, 614, 674
AcsI RAATTY 2 cut(s) 542, 1223
AcuI CTGAAG 3 cut(s) 368, 1020, 1392
AcyI GRCGYC 1 cut(s) 485
AfaI GTAC 3 cut(s) 71, 182, 1368
AjnI CCWGG 2 cut(s) 974, 1141
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 8 cut(s) 103, 244, 341, 623, 629, 746, 957, 1395
AluI AGCT 8 cut(s) 103, 244, 341, 623, 629, 746, 957, 1395
Alw21I GWGCWC 1 cut(s) 246
AlwI GGATC 3 cut(s) 146, 614, 674
AlwNI CAGNNNCTG 3 cut(s) 746, 1130, 1370
Ama87I CYCGRG 1 cut(s) 641
AoxI GGCC 6 cut(s) 159, 190, 199, 379, 444, 812
ApeKI GCWGC 8 cut(s) 272, 620, 623, 626, 629, 719, 1133, 1395
ApoI RAATTY 2 cut(s) 542, 1223
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 641
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 246
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 1436
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 8 cut(s) 259, 610, 616, 632, 638, 731, 1120, 1382
BccI CCATC 2 cut(s) 305, 1025
BceAI ACGGC 4 cut(s) 33, 52, 93, 698
BcgI CGANNNNNNTGC 4 cut(s) 296, 330, 1092, 1126
BciT130I CCWGG 2 cut(s) 976, 1143
BciVI GTATCC 1 cut(s) 956
BclI TGATCA 1 cut(s) 1081
BfaI CTAG 3 cut(s) 209, 480, 1448
BfmI CTRYAG 2 cut(s) 624, 1329
BfoI RGCGCY 1 cut(s) 27
BfuI GTATCC 1 cut(s) 956
BglI GCCNNNNNGGC 1 cut(s) 198
BglII AGATCT 2 cut(s) 900, 1204
BisI GCNGC 9 cut(s) 81, 273, 621, 624, 627, 630, 720, 1134, 1396
BlsI GCNGC 9 cut(s) 82, 274, 622, 625, 628, 631, 721, 1135, 1397
Bme1390I CCNGG 2 cut(s) 976, 1143
BmeT110I CYCGRG 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 84, 191, 1216
BmrFI CCNGG 2 cut(s) 976, 1143
BmsI GCATC 4 cut(s) 259, 588, 1140, 1375
BpiI GAAGAC 1 cut(s) 1436
Bpu10I CCTNAGC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 1142, 1218
BsaXI ACNNNNNCTCC 6 cut(s) 233, 263, 1250, 1280, 1280, 1310
Bse1I ACTGG 3 cut(s) 184, 532, 704
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 976, 1143
BseDI CCNNGG 2 cut(s) 1142, 1218
BseGI GGATG 4 cut(s) 267, 297, 1036, 1155
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 7 cut(s) 259, 333, 628, 800, 885, 912, 1001
BseNI ACTGG 3 cut(s) 184, 532, 704
BseRI GAGGAG 2 cut(s) 392, 1432
BseXI GCAGC 8 cut(s) 259, 610, 616, 632, 638, 731, 1120, 1382
BsgI GTGCAG 2 cut(s) 258, 639
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 6 cut(s) 161, 192, 201, 381, 446, 814
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 6 cut(s) 161, 192, 201, 381, 446, 814
BsoBI CYCGRG 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
BspACI CCGC 4 cut(s) 80, 150, 223, 1139
BspANI GGCC 6 cut(s) 161, 192, 201, 381, 446, 814
BspCNI CTCAG 7 cut(s) 258, 334, 627, 801, 886, 913, 1002
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 84, 191, 1216
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 3 cut(s) 146, 614, 674
BspT107I GGYRCC 1 cut(s) 82
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 3 cut(s) 184, 532, 704
BssECI CCNNGG 2 cut(s) 1142, 1218
BssMI GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
BssNI GRCGYC 1 cut(s) 485
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 1218
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 976, 1143
Bst4CI ACNGT 4 cut(s) 134, 429, 536, 551
Bst6I CTCTTC 2 cut(s) 564, 903
BstACI GRCGYC 1 cut(s) 485
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstC8I GCNNGC 2 cut(s) 816, 927
BstDEI CTNAG 8 cut(s) 245, 342, 614, 684, 809, 894, 921, 1010
BstF5I GGATG 4 cut(s) 267, 297, 1036, 1155
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 8 cut(s) 141, 609, 640, 682, 779, 903, 1084, 1207
BstMBI GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
BstMWI GCNNNNNNNGC 7 cut(s) 198, 626, 629, 719, 1121, 1130, 1159
BstNI CCWGG 2 cut(s) 976, 1143
BstNSI RCATGY 2 cut(s) 1166, 1179
BstSCI CCNGG 2 cut(s) 974, 1141
BstSFI CTRYAG 2 cut(s) 624, 1329
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 8 cut(s) 259, 610, 616, 632, 638, 731, 1120, 1382
BstV2I GAAGAC 1 cut(s) 1436
BstX2I RGATCY 3 cut(s) 138, 900, 1204
BstYI RGATCY 3 cut(s) 138, 900, 1204
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 6 cut(s) 161, 192, 201, 381, 446, 814
BtsCI GGATG 4 cut(s) 267, 297, 1036, 1155
BtsIMutI CAGTG 2 cut(s) 191, 622
Cac8I GCNNGC 2 cut(s) 816, 927
CaiI CAGNNNCTG 3 cut(s) 746, 1130, 1370
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 2 cut(s) 214, 844
Csp6I GTAC 3 cut(s) 70, 181, 1367
CviAII CATG 6 cut(s) 256, 395, 451, 1053, 1163, 1176
CviQI GTAC 3 cut(s) 70, 181, 1367
DdeI CTNAG 8 cut(s) 245, 342, 614, 684, 809, 894, 921, 1010
DpnI GATC 8 cut(s) 140, 608, 639, 681, 778, 902, 1083, 1206
DpnII GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
DrdI GACNNNNNNGTC 1 cut(s) 490
DseDI GACNNNNNNGTC 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 564, 903
EarI CTCTTC 2 cut(s) 564, 903
EciI GGCGGA 1 cut(s) 1128
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 1218
Eco147I AGGCCT 2 cut(s) 161, 381
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 3 cut(s) 368, 1020, 1392
Eco88I CYCGRG 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 1223
EcoRII CCWGG 2 cut(s) 974, 1141
EcoT14I CCWWGG 1 cut(s) 1218
EcoT22I ATGCAT 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 1218
FaeI CATG 6 cut(s) 259, 398, 454, 1056, 1166, 1179
FaqI GGGAC 1 cut(s) 237
FatI CATG 6 cut(s) 255, 394, 450, 1052, 1162, 1175
FauNDI CATATG 2 cut(s) 601, 820
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 9 cut(s) 81, 273, 621, 624, 627, 630, 720, 1134, 1396
FokI GGATG 4 cut(s) 274, 284, 1043, 1162
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 9 cut(s) 81, 273, 621, 624, 627, 630, 720, 1134, 1396
FspBI CTAG 3 cut(s) 209, 480, 1448
GlaI GCGC 1 cut(s) 25
GluI GCNGC 9 cut(s) 81, 273, 621, 624, 627, 630, 720, 1134, 1396
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 6 cut(s) 161, 192, 201, 381, 446, 814
HapII CCGG 1 cut(s) 301
HgaI GACGC 2 cut(s) 214, 844
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 485
Hin1II CATG 6 cut(s) 259, 398, 454, 1056, 1166, 1179
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HpaII CCGG 1 cut(s) 301
Hpy166II GTNNAC 3 cut(s) 391, 697, 751
Hpy188III TCNNGA 8 cut(s) 106, 641, 868, 989, 1079, 1181, 1208, 1448
Hpy8I GTNNAC 3 cut(s) 391, 697, 751
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 8 cut(s) 103, 191, 392, 1021, 1063, 1093, 1205, 1409
HpyCH4III ACNGT 4 cut(s) 134, 429, 536, 551
HpyCH4IV ACGT 3 cut(s) 60, 291, 485
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 626, 629, 719, 1121, 1130, 1159
HpyF3I CTNAG 8 cut(s) 245, 342, 614, 684, 809, 894, 921, 1010
HpySE526I ACGT 3 cut(s) 60, 291, 485
Hsp92I GRCGYC 1 cut(s) 485
Hsp92II CATG 6 cut(s) 259, 398, 454, 1056, 1166, 1179
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
LmnI GCTCC 4 cut(s) 241, 743, 1141, 1214
Lsp1109I GCAGC 8 cut(s) 259, 610, 616, 632, 638, 731, 1120, 1382
LweI GCATC 4 cut(s) 259, 588, 1140, 1375
MaeI CTAG 3 cut(s) 209, 480, 1448
MaeII ACGT 3 cut(s) 60, 291, 485
MaeIII GTNAC 2 cut(s) 56, 226
MalI GATC 8 cut(s) 140, 608, 639, 681, 778, 902, 1083, 1206
MbiI CCGCTC 1 cut(s) 150
MboI GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
MboII GAAGA 8 cut(s) 347, 469, 581, 910, 920, 1385, 1394, 1436
MflI RGATCY 3 cut(s) 138, 900, 1204
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 8 cut(s) 346, 371, 511, 542, 648, 855, 1092, 1223
MlyI GAGTC 3 cut(s) 107, 606, 697
MmeI TCCRAC 2 cut(s) 116, 411
Mph1103I ATGCAT 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 2 cut(s) 354, 1453
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 3 cut(s) 623, 629, 1395
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 976, 1143
MvaI CCWGG 2 cut(s) 976, 1143
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 7 cut(s) 198, 626, 629, 719, 1121, 1130, 1159
NdeI CATATG 2 cut(s) 601, 820
NdeII GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
NlaIII CATG 6 cut(s) 259, 398, 454, 1056, 1166, 1179
NlaIV GGNNCC 3 cut(s) 84, 191, 1216
NmuCI GTSAC 2 cut(s) 56, 226
NsiI ATGCAT 1 cut(s) 854
NspI RCATGY 2 cut(s) 1166, 1179
PaeR7I CTCGAG 1 cut(s) 641
PceI AGGCCT 2 cut(s) 161, 381
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 8 cut(s) 175, 594, 658, 674, 917, 1109, 1270, 1300
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 9 cut(s) 82, 274, 622, 625, 628, 631, 721, 1135, 1397
PleI GAGTC 3 cut(s) 107, 606, 696
PpsI GAGTC 3 cut(s) 107, 606, 696
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 974, 1141
PspGI CCWGG 2 cut(s) 974, 1141
PspN4I GGNNCC 3 cut(s) 84, 191, 1216
PspPI GGNCC 1 cut(s) 190
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 3 cut(s) 746, 1130, 1370
PsuI RGATCY 3 cut(s) 138, 900, 1204
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 3 cut(s) 623, 629, 1395
RsaI GTAC 3 cut(s) 71, 182, 1368
RsaNI GTAC 3 cut(s) 70, 181, 1367
RseI CAYNNNNRTG 1 cut(s) 260
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 354, 1453
SatI GCNGC 9 cut(s) 81, 273, 621, 624, 627, 630, 720, 1134, 1396
Sau3AI GATC 8 cut(s) 138, 606, 637, 679, 776, 900, 1081, 1204
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 3 cut(s) 107, 606, 697
ScrFI CCNGG 2 cut(s) 976, 1143
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 4 cut(s) 259, 588, 1140, 1375
SfcI CTRYAG 2 cut(s) 624, 1329
SfiI GGCCNNNNNGGCC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
Sse9I AATT 8 cut(s) 346, 371, 511, 542, 648, 855, 1092, 1223
SseBI AGGCCT 2 cut(s) 161, 381
SsiI CCGC 4 cut(s) 80, 150, 223, 1139
SspMI CTAG 3 cut(s) 209, 480, 1448
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 2 cut(s) 161, 381
StyD4I CCNGG 2 cut(s) 974, 1141
StyI CCWWGG 1 cut(s) 1218
TaaI ACNGT 4 cut(s) 134, 429, 536, 551
TaiI ACGT 3 cut(s) 63, 294, 488
TaqI TCGA 4 cut(s) 306, 642, 1049, 1322
TasI AATT 8 cut(s) 346, 371, 511, 542, 648, 855, 1092, 1223
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 8 cut(s) 175, 594, 658, 674, 917, 1109, 1270, 1300
Tru1I TTAA 2 cut(s) 354, 1453
Tru9I TTAA 2 cut(s) 354, 1453
TscAI CASTG 2 cut(s) 191, 622
TseFI GTSAC 2 cut(s) 56, 226
TseI GCWGC 8 cut(s) 272, 620, 623, 626, 629, 719, 1133, 1395
Tsp45I GTSAC 2 cut(s) 56, 226
TspDTI ATGAA 2 cut(s) 20, 1216
TspGWI ACGGA 1 cut(s) 1429
TspRI CASTG 2 cut(s) 191, 622
Tth111I GACNNNGTC 1 cut(s) 224
XapI RAATTY 2 cut(s) 542, 1223
XbaI TCTAGA 1 cut(s) 1447
XceI RCATGY 2 cut(s) 1166, 1179
XhoI CTCGAG 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 3 cut(s) 209, 480, 1448
ZraI GACGTC 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.