Rmu_co8131942.1_g000001

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8131942.1
OG0000378
Physical Location & Seq
Reverse (-)
2 .. 430
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8131942.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atgtggatgagtgacagaaggtatgttgaacttttgccctctgacgtagccatccggctcgacatgattgcaaaagtgcatggaatagaacatgctgagaagtattttaacaacactcccgaacaattgaaagcctatcaggtttactatgctctcctcaactgctatgctcatgcaaaacagttggaaaaagcagacgccaccatgcagaagatgagggatttggggttctgtaggacgtcatggtcatacaatgctttgctcaatttgtattataagaccggaaaccatgagaaatttgacaatctgatgagtgaaatggaagagagtggcatcaggtttgacagattcacatatgggatcagactcagtgcagctgcagctgcttctgatctcaagggaattgacaagattctggcagaatgggaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

143

Amino Acids

16.68

Weight (kDa)

6.09

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AasI GACNNNNNNGTC 1 cut(s) 244
AatII GACGTC 1 cut(s) 242
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 2 cut(s) 198, 239
AgsI TTSAA 2 cut(s) 29, 130
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 377, 383
AluI AGCT 2 cut(s) 377, 383
AlwI GGATC 1 cut(s) 368
ApeKI GCWGC 4 cut(s) 374, 377, 380, 383
ApoI RAATTY 1 cut(s) 296
BbvI GCAGC 4 cut(s) 364, 370, 386, 392
BccI CCATC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BfmI CTRYAG 2 cut(s) 232, 378
BisI GCNGC 4 cut(s) 375, 378, 381, 384
BlsI GCNGC 4 cut(s) 376, 379, 382, 385
BmsI GCATC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 380
BsaHI GRCGYC 2 cut(s) 198, 239
BsaWI WCCGGW 1 cut(s) 281
BseGI GGATG 2 cut(s) 12, 51
BseMII CTCAG 2 cut(s) 87, 382
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 364, 370, 386, 392
BsgI GTGCAG 1 cut(s) 393
BsiSI CCGG 2 cut(s) 55, 282
Bsp143I GATC 2 cut(s) 360, 391
BspCNI CTCAG 2 cut(s) 88, 381
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 1 cut(s) 368
BssMI GATC 2 cut(s) 360, 391
BssNI GRCGYC 2 cut(s) 198, 239
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 2 cut(s) 198, 239
BstDEI CTNAG 2 cut(s) 96, 368
BstF5I GGATG 2 cut(s) 12, 51
BstKTI GATC 2 cut(s) 363, 394
BstMBI GATC 2 cut(s) 360, 391
BstMWI GCNNNNNNNGC 2 cut(s) 380, 383
BstNSI RCATGY 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 232, 378
BstV1I GCAGC 4 cut(s) 364, 370, 386, 392
BtsCI GGATG 2 cut(s) 12, 51
BtsIMutI CAGTG 1 cut(s) 376
CseI GACGC 1 cut(s) 206
CviAII CATG 7 cut(s) 64, 80, 92, 173, 205, 243, 290
CviJI RGCY 5 cut(s) 50, 58, 134, 377, 383
CviKI_1 RGCY 5 cut(s) 50, 58, 134, 377, 383
DdeI CTNAG 2 cut(s) 96, 368
DpnI GATC 2 cut(s) 362, 393
DpnII GATC 2 cut(s) 360, 391
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
FaeI CATG 7 cut(s) 67, 83, 95, 176, 208, 246, 293
FatI CATG 7 cut(s) 63, 79, 91, 172, 204, 242, 289
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 4 cut(s) 375, 378, 381, 384
FokI GGATG 2 cut(s) 19, 38
Fsp4HI GCNGC 4 cut(s) 375, 378, 381, 384
GluI GCNGC 4 cut(s) 375, 378, 381, 384
HapII CCGG 2 cut(s) 55, 282
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 2 cut(s) 198, 239
Hin1II CATG 7 cut(s) 67, 83, 95, 176, 208, 246, 293
HinfI GANTC 3 cut(s) 348, 366, 412
HpaII CCGG 2 cut(s) 55, 282
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 43, 309, 365, 391
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 2 cut(s) 45, 239
HpyCH4V TGCA 6 cut(s) 71, 79, 176, 208, 374, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 383
HpyF3I CTNAG 2 cut(s) 96, 368
HpySE526I ACGT 2 cut(s) 45, 239
Hsp92I GRCGYC 2 cut(s) 198, 239
Hsp92II CATG 7 cut(s) 67, 83, 95, 176, 208, 246, 293
Kzo9I GATC 2 cut(s) 360, 391
LpnPI CCDG 5 cut(s) 68, 125, 295, 322, 401
Lsp1109I GCAGC 4 cut(s) 364, 370, 386, 392
LweI GCATC 1 cut(s) 342
MaeII ACGT 2 cut(s) 45, 239
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 362, 393
MboI GATC 2 cut(s) 360, 391
MboII GAAGA 2 cut(s) 223, 335
MfeI CAATTG 1 cut(s) 125
MluCI AATT 4 cut(s) 125, 265, 296, 402
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 3 cut(s) 49, 167, 210
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 377, 383
MspI CCGG 2 cut(s) 55, 282
MunI CAATTG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 380, 383
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 360, 391
NlaIII CATG 7 cut(s) 67, 83, 95, 176, 208, 246, 293
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 95
PfeI GAWTC 2 cut(s) 348, 412
PkrI GCNGC 4 cut(s) 376, 379, 382, 385
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PsiI TTATAA 1 cut(s) 276
PstI CTGCAG 1 cut(s) 382
PvuII CAGCTG 2 cut(s) 377, 383
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 4 cut(s) 375, 378, 381, 384
Sau3AI GATC 2 cut(s) 360, 391
SchI GAGTC 1 cut(s) 360
SetI ASST 7 cut(s) 23, 48, 144, 242, 341, 379, 385
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 2 cut(s) 232, 378
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 125, 265, 296, 402
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 2 cut(s) 48, 242
TaqI TCGA 1 cut(s) 60
TasI AATT 4 cut(s) 125, 265, 296, 402
TfiI GAWTC 2 cut(s) 348, 412
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 4 cut(s) 374, 377, 380, 383
Tsp45I GTSAC 1 cut(s) 11
TspRI CASTG 1 cut(s) 376
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 95
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.