Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002030.1

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

4421 .. 5551

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002030.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgacgaaccttcttcgttcaaatccatggcgcggcaatgccatttctaaggttttcggcgcattattctactccaccaatgccctagcttccccaccacccccacttcagtctctgcaccgcaggatttgctggctccaagaccaagatctcaaggcttctattttcccaattctcaatcactgggcttcggaagctagagacgtcgatcaactggaggtccaagctttcatcgtgaagctccgtaaatccaatcacttcaaccacgccctccaggtctcgacgtggatgagcgatgaattgaagctcagtctgactccaggagacgttgctgctcggatagacttgatctcgagagttcacggccccgaagaagccgagaagtattttgatggcgtttcggagcaattgaaaggtttgcaagcttattgtgctctcttacattgctatgctcagcatagattgttggataaggcagagagtgttttcggaaaaatgaaggagttaggttttgagataggaattaggtcttataattcaatgttatggctatgttttcggactggtaatcatgggaggatagatgttttagtgaaagagatggaagaaaaaggcattgattataaccaaggcactttgatggttaggttgtattcgtatgcagccatttcggagataggccgaatggaggaggttttgctgaagatggaagcccatcctctggtcactataagctggcgtagctatgttattgcagccaatgcgttgtccaaggttggagaagtggacaaggcattgacattgctgaggagctcggagaaactcattagcaatagcacaaggaaaattgcttacgaacacctgctctcttcatacgctgctattggtaagagagacgaggttgatagaatctcgaatttgtataaaaatttgggaaagtcctatagttatcgtcatatgttagttgcattgctgaaaatggatgacattgatggtgctgagaagcttgtggaggaatgtgaatctgagtccaagaagtttgacattcagataggcaacttgatggtcaatgctttctgcaagaaaggttatttggagagggccaaatcctttgtaggtgagaaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

376

Amino Acids

42.7

Weight (kDa)

8.09

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	534, 624
AarI	CACCTGC	1 cut(s)	870
AatII	GACGTC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	870
AccB7I	CCANNNNNTGG	1 cut(s)	721
AccII	CGCG	1 cut(s)	33
AciI	CCGC	2 cut(s)	33, 121
AcsI	RAATTY	2 cut(s)	916, 928
AcuI	CTGAAG	2 cut(s)	92, 722
AcyI	GRCGYC	1 cut(s)	204
AfiI	CCNNNNNNNGG	3 cut(s)	32, 688, 721
AgsI	TTSAA	5 cut(s)	21, 262, 304, 412, 540
AjiI	CACGTC	1 cut(s)	285
AjnI	CCWGG	2 cut(s)	273, 319
AjuI	GAANNNNNNNTTGG	2 cut(s)	1076, 1108
Alw21I	GWGCWC	2 cut(s)	436, 815
Alw26I	GTCTC	5 cut(s)	117, 195, 283, 318, 888
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	3 cut(s)	364, 679, 1101
ApeKI	GCWGC	4 cut(s)	332, 662, 755, 878
ApoI	RAATTY	2 cut(s)	916, 928
AspLEI	GCGC	2 cut(s)	33, 62
AspS9I	GGNCC	3 cut(s)	220, 365, 1101
AsuHPI	GGTGA	1 cut(s)	1130
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	815
Bbv12I	GWGCWC	2 cut(s)	436, 815
BbvCI	CCTCAGC	1 cut(s)	806
BbvI	GCAGC	4 cut(s)	319, 674, 767, 865
BccI	CCATC	7 cut(s)	386, 595, 634, 700, 723, 986, 1057
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BciT130I	CCWGG	2 cut(s)	275, 321
BcoDI	GTCTC	5 cut(s)	117, 195, 283, 318, 888
BfaI	CTAG	2 cut(s)	86, 198
BfmI	CTRYAG	1 cut(s)	943
BfuAI	ACCTGC	1 cut(s)	870
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	5 cut(s)	34, 333, 663, 756, 879
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	5 cut(s)	35, 334, 664, 757, 880
Bme1390I	CCNGG	2 cut(s)	275, 321
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	220, 365, 1101
BmiI	GGNNCC	2 cut(s)	137, 367
BmrFI	CCNGG	2 cut(s)	275, 321
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	3 cut(s)	236, 257, 303
Bpu10I	CCTNAGC	1 cut(s)	806
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	26, 628, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 688, 721
Bse1I	ACTGG	3 cut(s)	188, 219, 568
Bse3DI	GCAATG	4 cut(s)	43, 442, 800, 968
BseBI	CCWGG	2 cut(s)	275, 321
BseDI	CCNNGG	3 cut(s)	26, 628, 771
BseGI	GGATG	3 cut(s)	294, 715, 988
BseLI	CCNNNNNNNGG	3 cut(s)	32, 688, 721
BseMI	GCAATG	4 cut(s)	43, 442, 800, 968
BseMII	CTCAG	5 cut(s)	322, 467, 797, 990, 1017
BseNI	ACTGG	3 cut(s)	188, 219, 568
BseRI	GAGGAG	2 cut(s)	704, 823
BseXI	GCAGC	4 cut(s)	319, 674, 767, 865
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	366, 681, 1103
BsiHKAI	GWGCWC	2 cut(s)	436, 815
BsiHKCI	CYCGRG	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	32, 688, 721
BsmAI	GTCTC	5 cut(s)	117, 195, 283, 318, 888
BsmBI	CGTCTC	3 cut(s)	195, 318, 888
BsnI	GGCC	3 cut(s)	366, 681, 1103
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	436, 815
Bsp143I	GATC	3 cut(s)	148, 208, 348
Bsp1720I	GCTNAGC	1 cut(s)	453
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	33, 121
BspANI	GGCC	3 cut(s)	366, 681, 1103
BspCNI	CTCAG	5 cut(s)	321, 466, 798, 991, 1018
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	137, 367
BspMI	ACCTGC	1 cut(s)	870
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	4 cut(s)	43, 442, 800, 968
BsrI	ACTGG	3 cut(s)	188, 219, 568
BssECI	CCNNGG	3 cut(s)	26, 628, 771
BssMI	GATC	3 cut(s)	148, 208, 348
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	3 cut(s)	26, 628, 771
Bst2UI	CCWGG	2 cut(s)	275, 321
Bst6I	CTCTTC	1 cut(s)	874
BstACI	GRCGYC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	129, 761
BstC8I	GCNNGC	3 cut(s)	134, 423, 737
BstDEI	CTNAG	6 cut(s)	48, 308, 453, 806, 999, 1026
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	3 cut(s)	294, 715, 988
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	33, 62
BstKTI	GATC	3 cut(s)	151, 211, 351
BstMAI	GTCTC	5 cut(s)	117, 195, 283, 318, 888
BstMBI	GATC	3 cut(s)	148, 208, 348
BstMWI	GCNNNNNNNGC	5 cut(s)	129, 194, 431, 741, 761
BstNI	CCWGG	2 cut(s)	275, 321
BstSCI	CCNGG	2 cut(s)	273, 319
BstSFI	CTRYAG	1 cut(s)	943
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	319, 674, 767, 865
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	366, 681, 1103
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	309
BtrI	CACGTC	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	294, 715, 988
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	870
Cac8I	GCNNGC	3 cut(s)	134, 423, 737
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	33, 62
Cfr13I	GGNCC	3 cut(s)	220, 365, 1101
CviAII	CATG	2 cut(s)	27, 572
DdeI	CTNAG	6 cut(s)	48, 308, 453, 806, 999, 1026
DpnI	GATC	3 cut(s)	150, 210, 350
DpnII	GATC	3 cut(s)	148, 208, 348
Eam1104I	CTCTTC	1 cut(s)	874
EarI	CTCTTC	1 cut(s)	874
Ecl136II	GAGCTC	1 cut(s)	813
Eco130I	CCWWGG	3 cut(s)	26, 628, 771
Eco24I	GRGCYC	1 cut(s)	815
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	813
Eco57I	CTGAAG	2 cut(s)	92, 722
Eco88I	CYCGRG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	273, 319
EcoT14I	CCWWGG	3 cut(s)	26, 628, 771
EcoT38I	GRGCYC	1 cut(s)	815
ErhI	CCWWGG	3 cut(s)	26, 628, 771
Esp3I	CGTCTC	3 cut(s)	195, 318, 888
FaeI	CATG	2 cut(s)	30, 575
FatI	CATG	2 cut(s)	26, 571
FauNDI	CATATG	1 cut(s)	957
Fnu4HI	GCNGC	5 cut(s)	34, 333, 663, 756, 879
FokI	GGATG	3 cut(s)	301, 702, 995
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	5 cut(s)	34, 333, 663, 756, 879
FspBI	CTAG	2 cut(s)	86, 198
GlaI	GCGC	2 cut(s)	32, 61
GluI	GCNGC	5 cut(s)	34, 333, 663, 756, 879
GsuI	CTGGAG	3 cut(s)	236, 257, 303
HaeIII	GGCC	3 cut(s)	366, 681, 1103
HhaI	GCGC	2 cut(s)	33, 62
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	30, 575
Hin6I	GCGC	2 cut(s)	31, 60
HinP1I	GCGC	2 cut(s)	31, 60
HindIII	AAGCTT	3 cut(s)	225, 423, 1004
HinfI	GANTC	4 cut(s)	316, 909, 1022, 1028
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	2 cut(s)	361, 787
Hpy188III	TCNNGA	5 cut(s)	235, 280, 352, 354, 913
Hpy8I	GTNNAC	2 cut(s)	361, 787
Hpy99I	CGWCG	2 cut(s)	209, 286
HpyAV	CCTTC	2 cut(s)	20, 493
HpyCH4IV	ACGT	3 cut(s)	204, 284, 327
HpyCH4V	TGCA	6 cut(s)	118, 421, 662, 755, 968, 1080
HpyF10VI	GCNNNNNNNGC	5 cut(s)	129, 194, 431, 741, 761
HpyF3I	CTNAG	6 cut(s)	48, 308, 453, 806, 999, 1026
HpySE526I	ACGT	3 cut(s)	204, 284, 327
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	30, 575
HspAI	GCGC	2 cut(s)	31, 60
Kzo9I	GATC	3 cut(s)	148, 208, 348
LmnI	GCTCC	4 cut(s)	141, 246, 403, 810
Lsp1109I	GCAGC	4 cut(s)	319, 674, 767, 865
MaeI	CTAG	2 cut(s)	86, 198
MaeII	ACGT	3 cut(s)	204, 284, 327
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	3 cut(s)	150, 210, 350
MboI	GATC	3 cut(s)	148, 208, 348
MboII	GAAGA	5 cut(s)	5, 383, 617, 715, 861
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	436, 815
MluCI	AATT	8 cut(s)	171, 299, 407, 522, 535, 846, 916, 928
MlyI	GAGTC	2 cut(s)	310, 1037
MmeI	TCCRAC	2 cut(s)	447, 757
MslI	CAYNNNNRTG	2 cut(s)	447, 638
MspR9I	CCNGG	2 cut(s)	275, 321
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	275, 321
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	129, 194, 431, 741, 761
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	957
NdeII	GATC	3 cut(s)	148, 208, 348
NlaIII	CATG	2 cut(s)	30, 575
NlaIV	GGNNCC	2 cut(s)	137, 367
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	909, 1022
PflMI	CCANNNNNTGG	1 cut(s)	721
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	35, 334, 664, 757, 880
PleI	GAGTC	2 cut(s)	310, 1036
PpsI	GAGTC	2 cut(s)	310, 1036
PsiI	TTATAA	2 cut(s)	534, 624
Psp124BI	GAGCTC	1 cut(s)	815
Psp6I	CCWGG	2 cut(s)	273, 319
PspGI	CCWGG	2 cut(s)	273, 319
PspN4I	GGNNCC	2 cut(s)	137, 367
PspPI	GGNCC	3 cut(s)	220, 365, 1101
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	447, 638
SacI	GAGCTC	1 cut(s)	815
SatI	GCNGC	5 cut(s)	34, 333, 663, 756, 879
Sau3AI	GATC	3 cut(s)	148, 208, 348
Sau96I	GGNCC	3 cut(s)	220, 365, 1101
SchI	GAGTC	2 cut(s)	310, 1037
ScrFI	CCNGG	2 cut(s)	275, 321
SduI	GDGCHC	2 cut(s)	436, 815
SfcI	CTRYAG	1 cut(s)	943
Sfr274I	CTCGAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	447, 638
SmlI	CTYRAG	2 cut(s)	152, 352
SmoI	CTYRAG	2 cut(s)	152, 352
Sse9I	AATT	8 cut(s)	171, 299, 407, 522, 535, 846, 916, 928
SsiI	CCGC	2 cut(s)	33, 121
SspMI	CTAG	2 cut(s)	86, 198
SstI	GAGCTC	1 cut(s)	815
StyD4I	CCNGG	2 cut(s)	273, 319
StyI	CCWWGG	3 cut(s)	26, 628, 771
TaiI	ACGT	3 cut(s)	207, 287, 330
TaqI	TCGA	4 cut(s)	207, 281, 353, 914
TasI	AATT	8 cut(s)	171, 299, 407, 522, 535, 846, 916, 928
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	909, 1022
TscAI	CASTG	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	4 cut(s)	332, 662, 755, 878
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	4 cut(s)	220, 312, 512, 861
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	916, 928
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	2 cut(s)	86, 198
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.