RLG00000023689

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000378
Physical Location & Seq
Forward (+)
27127178 .. 27127710
533 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023689

Sequence Viewer

Length: 372 bp
ATGCCACAATATGCAGCACTAGGGAAGAAAGATAATGTTATGAGACTATGGAAACTTTACAAGGGTCAGATGAAAGTATACAATAAGGGTTATAGAATCATGATAACCTCACTATTGAAGATTGGCGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAGTCAGTTTATGATGCAATTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACACGGATGTTTGGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGTGCCAAGGAATATATAAAGCTCCTCACTGATAAGAATGTTATCACCGTGATTACACGAGAGACTGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

124

Amino Acids

14.2

Weight (kDa)

8.89

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 1 cut(s) 284
AgsI TTSAA 3 cut(s) 118, 155, 368
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 3 cut(s) 37, 269, 353
AlwI GGATC 1 cut(s) 284
ApeKI GCWGC 3 cut(s) 14, 223, 257
AsuHPI GGTGA 1 cut(s) 334
BanI GGYRCC 1 cut(s) 299
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 3 cut(s) 26, 235, 244
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 37, 269, 353
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 147
BisI GCNGC 3 cut(s) 15, 224, 258
BlsI GCNGC 3 cut(s) 16, 225, 259
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 3 cut(s) 26, 235, 244
BsgI GTGCAG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 299
BsmAI GTCTC 3 cut(s) 37, 269, 353
Bsp143I GATC 2 cut(s) 147, 289
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 147, 289
BssNAI GTATAC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 3 cut(s) 131, 346, 364
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 2 cut(s) 150, 292
BstMAI GTCTC 3 cut(s) 37, 269, 353
BstMBI GATC 2 cut(s) 147, 289
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 26, 235, 244
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 136, 324
CciI TCATGA 1 cut(s) 99
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 218, 226, 257, 319
CviKI_1 RGCY 4 cut(s) 218, 226, 257, 319
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 149, 291
DpnII GATC 2 cut(s) 147, 289
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 103
FaiI YATR 9 cut(s) 12, 41, 49, 79, 93, 101, 183, 312, 314
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 15, 224, 258
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 15, 224, 258
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 15, 224, 258
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 2 cut(s) 96, 164
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 79, 198
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 100, 293
Hpy8I GTNNAC 2 cut(s) 79, 198
HpyCH4III ACNGT 3 cut(s) 131, 346, 364
HpyCH4V TGCA 3 cut(s) 14, 188, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 2 cut(s) 147, 289
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 213, 240, 274, 300, 306
Lsp1109I GCAGC 3 cut(s) 26, 235, 244
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 20
MalI GATC 2 cut(s) 149, 291
MboI GATC 2 cut(s) 147, 289
MboII GAAGA 5 cut(s) 37, 130, 157, 167, 247
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 118, 289, 332
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 2 cut(s) 147, 289
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 301
NmeAIII GCCGAG 1 cut(s) 166
PagI TCATGA 1 cut(s) 99
PfeI GAWTC 2 cut(s) 96, 164
PkrI GCNGC 3 cut(s) 16, 225, 259
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 301
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 3 cut(s) 15, 224, 258
Sau3AI GATC 2 cut(s) 147, 289
ScrFI CCNGG 1 cut(s) 228
SetI ASST 3 cut(s) 110, 289, 321
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 1 cut(s) 189
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 131, 346, 364
TasI AATT 1 cut(s) 189
TfiI GAWTC 2 cut(s) 96, 164
TscAI CASTG 2 cut(s) 136, 331
TseI GCWGC 3 cut(s) 14, 223, 257
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 136, 331
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.