Rmu_sc0017665.1_g000007

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017665.1
OG0000378
Physical Location & Seq
Reverse (-)
35280 .. 35918
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017665.1_g000007.1.cds

Sequence Viewer

Length: 639 bp
atgacgcggtacgcagtactagggaaaaaagacgatactttgagactatggaaatgttacaaggagcagatgaaagtatacaacaggggttatctatgcataattacctcactcttgaagtctgaggatattgagagtgctgagaagatctttgaagagtgggaatctgagcatgcaaattatgatattcgtatcccaaatagcttgattggtgcttataccaggaatggttttcttgacaaggctgaagccattatgagcaggataagattgaaggatgggaaacctaatcatacgacatggatttatttggcgaaggggtatcttgatcaaggtcaaattgagaaggcacttgaatcggcaacaaaagcagtttctgctgctccgccagggtggatgccgaaaaaggatgttgtggtcgcatgtctggaaaacttcaaactgaaagcagatctggaaggagccaaggaattcataaaactcgttgtggataagaatatgcaggagagattgttgaatcataagaatatgcaggaggcgttgttgaatcatatcaaaaatgagaattcgactgctgtagtaggcgattggaatgggcttgtccaaaggtatattcagatggtggaatctgggcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

212

Amino Acids

24.31

Weight (kDa)

8.28

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 7
AciI CCGC 2 cut(s) 7, 386
AcsI RAATTY 2 cut(s) 470, 565
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 11, 18
AgsI TTSAA 7 cut(s) 118, 155, 274, 356, 439, 517, 547
AjnI CCWGG 2 cut(s) 221, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 470, 565
BbvI GCAGC 1 cut(s) 367
BccI CCATC 2 cut(s) 272, 613
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 2 cut(s) 223, 390
BciVI GTATCC 1 cut(s) 203
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 576
BfuI GTATCC 1 cut(s) 203
BglII AGATCT 2 cut(s) 147, 451
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 223, 390
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 2 cut(s) 223, 390
BmsI GCATC 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 389, 465
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 527, 557
BseBI CCWGG 2 cut(s) 223, 390
BseDI CCNNGG 2 cut(s) 389, 465
BseGI GGATG 3 cut(s) 283, 402, 415
BseMII CTCAG 3 cut(s) 114, 132, 159
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 147, 328, 451
BspACI CCGC 2 cut(s) 7, 386
BspCNI CTCAG 3 cut(s) 115, 133, 160
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 389, 465
BssMI GATC 3 cut(s) 147, 328, 451
BssNAI GTATAC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 223, 390
Bst6I CTCTTC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 123, 141, 168
BstF5I GGATG 3 cut(s) 283, 402, 415
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 3 cut(s) 150, 331, 454
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 147, 328, 451
BstMWI GCNNNNNNNGC 2 cut(s) 368, 377
BstNI CCWGG 2 cut(s) 223, 390
BstNSI RCATGY 2 cut(s) 176, 426
BstSCI CCNGG 2 cut(s) 221, 388
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 2 cut(s) 147, 451
BstYI RGATCY 2 cut(s) 147, 451
BstZ17I GTATAC 1 cut(s) 79
BsuI GTATCC 1 cut(s) 203
BtsCI GGATG 3 cut(s) 283, 402, 415
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 377
CseI GACGC 1 cut(s) 13
Csp6I GTAC 2 cut(s) 10, 17
CviAII CATG 3 cut(s) 173, 300, 423
CviJI RGCY 5 cut(s) 204, 245, 251, 464, 598
CviKI_1 RGCY 5 cut(s) 204, 245, 251, 464, 598
CviQI GTAC 2 cut(s) 10, 17
DdeI CTNAG 3 cut(s) 123, 141, 168
DpnI GATC 3 cut(s) 149, 330, 453
DpnII GATC 3 cut(s) 147, 328, 451
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 2 cut(s) 470, 565
EcoRII CCWGG 2 cut(s) 221, 388
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 176, 303, 426
FatI CATG 3 cut(s) 172, 299, 422
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 3 cut(s) 290, 409, 422
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 381
HgaI GACGC 1 cut(s) 13
Hin1II CATG 3 cut(s) 176, 303, 426
HinfI GANTC 5 cut(s) 164, 356, 517, 547, 626
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 124, 169, 618
Hpy188III TCNNGA 5 cut(s) 115, 236, 326, 428, 455
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 4 cut(s) 268, 310, 340, 452
HpyCH4V TGCA 4 cut(s) 99, 176, 502, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 377
HpyF3I CTNAG 3 cut(s) 123, 141, 168
Hsp92II CATG 3 cut(s) 176, 303, 426
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 147, 328, 451
LmnI GCTCC 3 cut(s) 64, 388, 461
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 387
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 56
MalI GATC 3 cut(s) 149, 330, 453
MboI GATC 3 cut(s) 147, 328, 451
MboII GAAGA 2 cut(s) 157, 167
MflI RGATCY 2 cut(s) 147, 451
MluCI AATT 5 cut(s) 102, 178, 339, 470, 565
MnlI CCTC 3 cut(s) 118, 118, 529
Mph1103I ATGCAT 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 223, 390
MvaI CCWGG 2 cut(s) 223, 390
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 368, 377
NdeII GATC 3 cut(s) 147, 328, 451
NlaIII CATG 3 cut(s) 176, 303, 426
NlaIV GGNNCC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 101
NspI RCATGY 2 cut(s) 176, 426
PaeI GCATGC 1 cut(s) 176
PfeI GAWTC 5 cut(s) 164, 356, 517, 547, 626
PkrI GCNGC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 221, 388
PspGI CCWGG 2 cut(s) 221, 388
PspN4I GGNNCC 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 377
PsuI RGATCY 2 cut(s) 147, 451
RsaI GTAC 2 cut(s) 11, 18
RsaNI GTAC 2 cut(s) 10, 17
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 147, 328, 451
ScaI AGTACT 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 223, 390
SetI ASST 5 cut(s) 110, 206, 289, 337, 611
SfaNI GCATC 1 cut(s) 387
SfcI CTRYAG 1 cut(s) 576
SphI GCATGC 1 cut(s) 176
Sse9I AATT 5 cut(s) 102, 178, 339, 470, 565
SsiI CCGC 2 cut(s) 7, 386
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 221, 388
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 1 cut(s) 569
TasI AATT 5 cut(s) 102, 178, 339, 470, 565
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 5 cut(s) 164, 356, 517, 547, 626
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 86, 463
XapI RAATTY 2 cut(s) 470, 565
XceI RCATGY 2 cut(s) 176, 426
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.