Rorug03G0163800

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
13651569 .. 13659915
8347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0163800.1

Sequence Viewer

Length: 3969 bp
ATGGAATCTGCTAGCTCTAACACTAACAATATGCCAGGCGTTGTCCATCAGTTGCTTCCTGTTGTTGGACCCATGCTTCTGATTGCAGTTGGATATCTTGACCCTGGAAAGTGGGCGGCAACTGTTGAAGCAGGTTCCCGTTATGGAACTGATCTGGCTGCAGTAATGCTTATATTCAATTTGGCTGCTATTTTATGTCACTATCTGTCAGCACGGATTGCTGTAGTCACTGGAAGAGATCTTGCTCAGGTTTGCAGTGAGGAGTATGACAAGGCTACGTGCATATTCTTAGGAGTACAAACAGAGATGTCGGTGATTGTGTTGGACCTTACCATGATCCTTGGTATCGCACATGGACTTAATCTTCTGTTTGGGTGGGACTTGTTCACTTGTGTGTTTTTGACTGCTGCTAATGCTGTTTTATACCCTCTTTTTTCCACCCTCCTGGAGACTTGCAAGGCGAAATTCCTTTGCGTATGCATATACATTGCAGGATTTCTACTGCTTTCCTTTGTTCTTGGAGTATTTATCAGTCAACCACAAGTGCCACTTTCCATGACTGGGATGTTAACAAAACTGAGTGGGGAAAGTGCTTTTTCACTGATGAGTCTTCTTGGAGCAAGTATAATGCCCCACAGTTTTTATCTTCATTCTTCTATTGTGCAGCAGCAGCAGCAACAACCAACTGTTTCTAAGGATGCCTTGTGTCAGAACCATTTTGTTGCCATCTTCTGCACCTTTAGTGGTATTTATCTGGTGAATTATGCCCTCATGACCTTAGCAGCAAATGTATTCTACACTTCACGTGGTTTGCTTACATTTCAGGATGCAATGTCCCTAATGGAACAGGTCTTTTGGGGTCCAATAGTACCTGTTGCCTTCTTGCTAGTTCTCTTTTTATCAAATCAAATCACAACATTAAGCTGGAGTCTGGGGGGACAAGTAGTCTTGAATGATTTTTTAAAACTAGACCTTCCTGGTTGGCTTCACTGTGCTTCAATCAGAATCATTGCCATTGTTCCTGCTCTGTATTTTGTTTGGAGCTCAGGAGCTGAGGGGATGTACCAACTGCTTATATCTACACAGGTGTTGGCAGCCTTGCTACTGCCGTCTTCTGTGATCCCTCTTTTTCGTGTTGCTGCTTCAAGACAAATAATGGGAGCCCATAAGATCTCTCAGTTCGTTGAATTCTTAGCCCTCATTACACTTATTGGGATGCTTGGATTAAAACTTGTCTTTGTAGTGGAAATGATTTTTGGGAATAGTGATTGGGTGGATAATTTGAGATGGGATGCTGGGAGTAGTATGTCCGCACTTCTCATCACTGCTTCTGCATCATTTTGTTTGATGATTTGGCTGGCAGCTACACCGTTAAAATCTGCAAGTGCTCGATTAGAGAACCAGGTGTGGAACTGGGATATGCCTAAGGGTGTATCTGAGCCATTTAGAAATAAGGAGGAGATTGATATAGCTGAACCTAATTATCATAGAGATGCAAGTGTTCAGAAGCATGAACCATCACCATCTTCTGGGAAGGCTTTGGATAGAGATTCAGATACAGCGGTTGCAAATTTTGATTTTGTTCTGCCCGAAACTCTCTTGGAGCCTGATCAGGAGCTTCAATCAACTACCTCAGAGGAAAATAGTTCTCTTAATACCTTTCCTCGCTCCGCCAAATGCAGTAAGGAGGAACCCACATCTGTGGTGGAGTCAATTCGCCTCCCAACTGTGGCTAGTGAGGTTTCTGATGTTACATCACTGGGCACCAGTACTGTGAAAGTTGAATCAACAGAGCCAGTTGAGAAGACTCTTGAAGTTGAAGGAGACTTACCAACTGAAAAAGATGATGATGAGGGAGATACCTGGGAACCTGAAGATTCCTTGAAAGAGGTTTCTGGGGGCCCCACTTCATTGACATCTGAGGGTCCAGGATCATTCAGGAGTCTCAGTGGAAAAGGTGATGAAGGGGGGAGTGGTGCTGGAAGCCTTTCAAGATTAGCAGGGTTGGGGCGTGCTGCTAGACGGCAACTAGCTGCAGTACTCGATGAGTTTTGGGGACAGCTGTATGATTTCCATGGTAATGTAATTCAAGAAGCAAAGGCTAGGAAACTGGATCTGTTGTTGGGGTCTGATTCAAAGGCTTCTTCTGCCGCTTCCTCCGCTTCCTCCGTGCTGAAAGATGATACCACTGCAAAGGAAGTTTCTGGATACTTTCCATCTGTAGGAGGCAGAGGATCTGATCCTTTAATCAACTCAAGTTTATACGACTCCGTAAATCAGCCGAGGCTGCAAAACAGTTTAGAATCATCATATGGGGCTCAAAGGGGATCTTCCTCATTATGGTCTGGCCACATACCGTTGCTGGATGCGTATGTACAAAATTCAACCCGCAGTATTATTGACTCGGGTGAGAGGCGCTATTCAAGTGTGCGCAGTATACCAACTTCTGACTCGGGTGAGAGGCGCTATTCAAGTGTCCGCAGCATACCATCTGCTGAGAGCTGGGATTACCAGCCAGCCACAGTACACGGTTATCAGATTTCATCGTATCTTAATCGTAATGACAGAAGTTCTGGTAACTTGAATGGTCAAATGGAGTCACCAGCCCTAAATTCTGCTTCTTCATTGGGTGCTGGAAACTACAGAGATTCACTTGCATTTACCATGGGGCAGAAGTTGCAAAATGGGTTGGGCTCTGGACAGGCCTCCAGTTTTCAGAACCTTATGGTATCTCGACATAGTCTGTTGCAATCTGAAAGACCATATTATGATGTACACTCTTCTGGACTTTCTGAGAATGTGGTAAATTCAGCCAATGCAAAGAAATACCACAGTTTACCTGACATTCACCGCGATCTCTACATGTCTAATAAAAGTGCTCAACGGGATGCTCCCCCTGGGTTTGGGAAAACTAATTATGAATCATCCTTGTATCCAAAATCTGGTGCACGGACAGGAGGTCCTTTGGCATTTGATGAACTCTCTCCATCAACAGTCTATAGAGATGTTCTATCATCGCAACAGAATTCTAATTTTGGCACTGGATCCCTCTGGTCTAGACAGCCTTTTGAGCAATTTGGTGTAGCTGATAATAATTGTTCTATTGGGACTGCAGTTGGTAGTAGAGCAGGTTCTGCAGGTCAGGACGCTATGTCAGTTGCAGATTCAGAGGCGAAGCTTCTTCAGTCTTTTAGACACTGCATTGTGAAGCTTTTGAAGTTGGAAGGGTCTGACTGGTTGTTTAGACAGAATGATGGAGTGGATGAGGATCTAATAGATCGTGTGGCTGCCAGGGAGAAAATTCTTTATGAAGCTGAAACTAGAGAGATTAATCGTACAGTTCACATGGGTGAATCTCAGTACACTTCTGACAGGAAGTCAACTTCTGCAATAAAAATGAATGATGCAAATCTCACCCATCTCATGGTTTCCTCAGTTCCTAATTGTGGGGAAGGTTGTATCTGGAGATCTGATCTAATAATAAGCTTTGGGGTCTGGTGTATCCATCGGATTCTTGATTTGTCCCTTATGGAAAGCCGGCCAGAGCTCTGGGGGAAATATACTTACGTTCTCAATCGACTTCAGGGGATTATTGATTCTGCGTTTTCAAGGCCTCGTTCTCCAATGTCTCCATGCTTCTGCCTTCAAATTGCAGCAGCACAGCAGCAGAAGTCTAGTCCAACATTTTCGAATGGAATGTTACCCCCTGCTGCAAAACCAGCCAGGGGAAAATGCACTACAGCTGTAACGCTCCTGGACATAATCAAGGATGTGGAGATTGCAATCTCTTGTCGAAAGGGCCGAACGGGGACAGCAGCCGGTGATGTGGCTTTCCCGAAGGGAAAAGAAAATCTGGCATCTGTCCTCAAACGCTACAAGCGGCGATTATCCAACAAACCTGTTGGCACTCAGGAGGGGCCTTCCGGTTCACGGAAGGGTGCTCCAACATCTGCTCCTTATGGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1322

Amino Acids

143.41

Weight (kDa)

5.68

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 38 - 392 4.3e-83 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2432
Acc36I ACCTGC 3 cut(s) 122, 3119, 3128
AccB1I GGYRCC 1 cut(s) 1763
AccB7I CCANNNNNTGG 3 cut(s) 1529, 2942, 3424
AccI GTMKAC 1 cut(s) 2437
AccII CGCG 1 cut(s) 2853
AcoI YGGCCR 2 cut(s) 2347, 3539
AcsI RAATTY 8 cut(s) 464, 1187, 1570, 2380, 2611, 2806, 3025, 3300
AcuI CTGAAG 3 cut(s) 1893, 3167, 3566
AcvI CACGTG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 2862
AhdI GACNNNNNGTC 4 cut(s) 944, 2958, 3151, 3376
AjuI GAANNNNNNNTTGG 2 cut(s) 1239, 1271
AleI CACNNNNGTG 3 cut(s) 392, 1700, 3348
Alw21I GWGCWC 6 cut(s) 1046, 1390, 2881, 2950, 3549, 3943
Alw26I GTCTC 4 cut(s) 443, 1818, 1949, 3633
Alw44I GTGCAC 1 cut(s) 2946
AlwNI CAGNNNCTG 2 cut(s) 1052, 3134
Ama87I CYCGRG 2 cut(s) 2404, 2452
AoxI GGCC 7 cut(s) 1900, 2347, 2703, 3539, 3611, 3799, 3917
ApaI GGGCCC 1 cut(s) 1904
ApaLI GTGCAC 1 cut(s) 2946
ApoI RAATTY 8 cut(s) 464, 1187, 1570, 2380, 2611, 2806, 3025, 3300
AseI ATTAAT 1 cut(s) 3330
Asp700I GAANNNNTTC 1 cut(s) 1987
AspLEI GCGC 3 cut(s) 2418, 2433, 2466
AspS9I GGNCC 9 cut(s) 68, 325, 860, 1900, 1901, 1925, 2960, 3799, 3917
AsuII TTCGAA 1 cut(s) 3689
AsuNHI GCTAGC 1 cut(s) 11
AvaI CYCGRG 2 cut(s) 2404, 2452
AvaII GGWCC 5 cut(s) 68, 325, 860, 1925, 2960
AxyI CCTNAGG 1 cut(s) 1425
BaeGI GKGCMC 3 cut(s) 1766, 1904, 2950
BaeI ACNNNNGTAYC 2 cut(s) 1548, 1581
BalI TGGCCA 1 cut(s) 2349
BamHI GGATCC 1 cut(s) 3044
BanI GGYRCC 1 cut(s) 1763
BanII GRGCYC 6 cut(s) 1046, 1165, 1904, 2320, 2696, 3549
BarI GAAGNNNNNNTAC 4 cut(s) 1812, 1844, 2428, 2460
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 3 cut(s) 602, 1104, 1811
Bbv12I GWGCWC 6 cut(s) 1046, 1390, 2881, 2950, 3549, 3943
BbvCI CCTCAGC 1 cut(s) 1053
BceAI ACGGC 2 cut(s) 1093, 2039
BciVI GTATCC 3 cut(s) 2201, 2943, 3512
BclI TGATCA 1 cut(s) 1609
BcoDI GTCTC 4 cut(s) 443, 1818, 1949, 3633
BfmI CTRYAG 9 cut(s) 159, 222, 2034, 2220, 2641, 2998, 3111, 3135, 3738
BfoI RGCGCY 2 cut(s) 2419, 2467
BfuAI ACCTGC 3 cut(s) 122, 3119, 3128
BfuI GTATCC 3 cut(s) 2201, 2943, 3512
BglII AGATCT 3 cut(s) 238, 1170, 3467
BmcAI AGTACT 2 cut(s) 1771, 2040
Bme18I GGWCC 5 cut(s) 68, 325, 860, 1925, 2960
BmeRI GACNNNNNGTC 4 cut(s) 944, 2958, 3151, 3376
BmeT110I CYCGRG 2 cut(s) 2404, 2452
BmgT120I GGNCC 9 cut(s) 68, 325, 860, 1900, 1901, 1925, 2960, 3799, 3917
BmrI ACTGGG 3 cut(s) 570, 1423, 1769
BmtI GCTAGC 1 cut(s) 15
BmuI ACTGGG 3 cut(s) 570, 1423, 1769
BpiI GAAGAC 3 cut(s) 602, 1104, 1811
BpmI CTGGAG 4 cut(s) 467, 946, 2692, 3484
Bpu10I CCTNAGC 4 cut(s) 246, 778, 1045, 1053
Bpu14I TTCGAA 1 cut(s) 3689
BpuEI CTTGAG 1 cut(s) 2239
BsaAI YACGTR 2 cut(s) 279, 806
BsaBI GATNNNNATC 3 cut(s) 3267, 3408, 3782
BsaWI WCCGGW 1 cut(s) 3923
BsaXI ACNNNNNCTCC 4 cut(s) 1933, 1963, 3937, 3967
Bse118I RCCGGY 2 cut(s) 3537, 3818
Bse21I CCTNAGG 1 cut(s) 1425
Bse3DI GCAATG 3 cut(s) 486, 837, 1008
Bse8I GATNNNNATC 3 cut(s) 3267, 3408, 3782
BseJI GATNNNNATC 3 cut(s) 3267, 3408, 3782
BseMI GCAATG 3 cut(s) 486, 837, 1008
BseRI GAGGAG 2 cut(s) 275, 1472
BseSI GKGCMC 3 cut(s) 1766, 1904, 2950
BseYI CCCAGC 2 cut(s) 1295, 2502
BsgI GTGCAG 2 cut(s) 683, 718
Bsh1236I CGCG 1 cut(s) 2853
BshFI GGCC 7 cut(s) 1902, 2349, 2705, 3541, 3613, 3801, 3919
BshNI GGYRCC 1 cut(s) 1763
BsiHKAI GWGCWC 6 cut(s) 1046, 1390, 2881, 2950, 3549, 3943
BsiHKCI CYCGRG 2 cut(s) 2404, 2452
BsiSI CCGG 3 cut(s) 3538, 3819, 3924
BslFI GGGAC 7 cut(s) 392, 820, 951, 2070, 3121, 3508, 3823
BsmAI GTCTC 4 cut(s) 443, 1818, 1949, 3633
BsmFI GGGAC 7 cut(s) 392, 820, 951, 2070, 3121, 3508, 3823
BsnI GGCC 7 cut(s) 1902, 2349, 2705, 3541, 3613, 3801, 3919
BsoBI CYCGRG 2 cut(s) 2404, 2452
Bsp119I TTCGAA 1 cut(s) 3689
Bsp120I GGGCCC 1 cut(s) 1900
Bsp1407I TGTACA 2 cut(s) 2374, 2773
Bsp19I CCATGG 2 cut(s) 2074, 2664
BspANI GGCC 7 cut(s) 1902, 2349, 2705, 3541, 3613, 3801, 3919
BspFNI CGCG 1 cut(s) 2853
BspHI TCATGA 1 cut(s) 771
BspMAI CTGCAG 4 cut(s) 163, 2038, 3115, 3139
BspMI ACCTGC 3 cut(s) 122, 3119, 3128
BspOI GCTAGC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 3689
BspT107I GGYRCC 1 cut(s) 1763
BsrDI GCAATG 3 cut(s) 486, 837, 1008
BsrFI RCCGGY 2 cut(s) 3537, 3818
BsrGI TGTACA 2 cut(s) 2374, 2773
BssAI RCCGGY 2 cut(s) 3537, 3818
BssNAI GTATAC 1 cut(s) 2438
BssT1I CCWWGG 3 cut(s) 340, 2074, 2664
Bst1107I GTATAC 1 cut(s) 2438
Bst6I CTCTTC 2 cut(s) 229, 2785
BstAPI GCANNNNNTGC 3 cut(s) 218, 2677, 3134
BstAUI TGTACA 2 cut(s) 2374, 2773
BstBAI YACGTR 2 cut(s) 279, 806
BstBI TTCGAA 1 cut(s) 3689
BstC8I GCNNGC 5 cut(s) 13, 1359, 2013, 2517, 3539
BstDSI CCRYGG 2 cut(s) 2074, 2664
BstFNI CGCG 1 cut(s) 2853
BstH2I RGCGCY 2 cut(s) 2419, 2467
BstHHI GCGC 3 cut(s) 2418, 2433, 2466
BstMAI GTCTC 4 cut(s) 443, 1818, 1949, 3633
BstNSI RCATGY 1 cut(s) 2866
BstSFI CTRYAG 9 cut(s) 159, 222, 2034, 2220, 2641, 2998, 3111, 3135, 3738
BstSLI GKGCMC 3 cut(s) 1766, 1904, 2950
BstUI CGCG 1 cut(s) 2853
BstV2I GAAGAC 3 cut(s) 602, 1104, 1811
BstX2I RGATCY 8 cut(s) 238, 1170, 2113, 2234, 2327, 3044, 3268, 3467
BstXI CCANNNNNNTGG 3 cut(s) 445, 1702, 3549
BstYI RGATCY 8 cut(s) 238, 1170, 2113, 2234, 2327, 3044, 3268, 3467
BstZ17I GTATAC 1 cut(s) 2438
Bsu36I CCTNAGG 1 cut(s) 1425
BsuI GTATCC 3 cut(s) 2201, 2943, 3512
BsuRI GGCC 7 cut(s) 1902, 2349, 2705, 3541, 3613, 3801, 3919
BtgI CCRYGG 2 cut(s) 2074, 2664
BtgZI GCGATG 1 cut(s) 3000
BtsI GCAGTG 4 cut(s) 262, 1323, 2187, 3196
BveI ACCTGC 3 cut(s) 122, 3119, 3128
Cac8I GCNNGC 5 cut(s) 13, 1359, 2013, 2517, 3539
CaiI CAGNNNCTG 2 cut(s) 1052, 3134
CciI TCATGA 1 cut(s) 771
CfoI GCGC 3 cut(s) 2418, 2433, 2466
Cfr10I RCCGGY 2 cut(s) 3537, 3818
Cfr13I GGNCC 9 cut(s) 68, 325, 860, 1900, 1901, 1925, 2960, 3799, 3917
CseI GACGC 1 cut(s) 3155
CsiI ACCWGGT 1 cut(s) 1401
DraI TTTAAA 1 cut(s) 963
DriI GACNNNNNGTC 4 cut(s) 944, 2958, 3151, 3376
EaeI YGGCCR 2 cut(s) 2347, 3539
Eam1104I CTCTTC 2 cut(s) 229, 2785
Eam1105I GACNNNNNGTC 4 cut(s) 944, 2958, 3151, 3376
EarI CTCTTC 2 cut(s) 229, 2785
EciI GGCGGA 1 cut(s) 1660
Ecl136II GAGCTC 2 cut(s) 1044, 3547
Eco130I CCWWGG 3 cut(s) 340, 2074, 2664
Eco147I AGGCCT 2 cut(s) 2705, 3613
Eco24I GRGCYC 6 cut(s) 1046, 1165, 1904, 2320, 2696, 3549
Eco32I GATATC 1 cut(s) 95
Eco47I GGWCC 5 cut(s) 68, 325, 860, 1925, 2960
Eco53kI GAGCTC 2 cut(s) 1044, 3547
Eco57I CTGAAG 3 cut(s) 1893, 3167, 3566
Eco72I CACGTG 1 cut(s) 806
Eco81I CCTNAGG 1 cut(s) 1425
Eco88I CYCGRG 2 cut(s) 2404, 2452
EcoICRI GAGCTC 2 cut(s) 1044, 3547
EcoO109I RGGNCCY 4 cut(s) 1900, 1901, 2960, 3917
EcoRI GAATTC 2 cut(s) 1187, 3025
EcoRV GATATC 1 cut(s) 95
EcoT14I CCWWGG 3 cut(s) 340, 2074, 2664
EcoT22I ATGCAT 1 cut(s) 482
EcoT38I GRGCYC 6 cut(s) 1046, 1165, 1904, 2320, 2696, 3549
ErhI CCWWGG 3 cut(s) 340, 2074, 2664
FalI AAGNNNNNCTT 6 cut(s) 534, 566, 686, 718, 2314, 2346
FaqI GGGAC 7 cut(s) 392, 820, 951, 2070, 3121, 3508, 3823
FauI CCCGC 1 cut(s) 2396
FauNDI CATATG 1 cut(s) 2311
FbaI TGATCA 1 cut(s) 1609
FblI GTMKAC 1 cut(s) 2437
FriOI GRGCYC 6 cut(s) 1046, 1165, 1904, 2320, 2696, 3549
FspI TGCGCA 1 cut(s) 2432
GlaI GCGC 3 cut(s) 2417, 2432, 2465
GsaI CCCAGC 2 cut(s) 1299, 2506
GsuI CTGGAG 4 cut(s) 467, 946, 2692, 3484
HaeII RGCGCY 2 cut(s) 2419, 2467
HaeIII GGCC 7 cut(s) 1902, 2349, 2705, 3541, 3613, 3801, 3919
HapII CCGG 3 cut(s) 3538, 3819, 3924
HgaI GACGC 1 cut(s) 3155
HhaI GCGC 3 cut(s) 2418, 2433, 2466
Hin6I GCGC 3 cut(s) 2416, 2431, 2464
HinP1I GCGC 3 cut(s) 2416, 2431, 2464
HincII GTYRAC 3 cut(s) 536, 570, 3381
HindII GTYRAC 3 cut(s) 536, 570, 3381
HindIII AAGCTT 3 cut(s) 3176, 3209, 3484
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 3 cut(s) 3538, 3819, 3924
HpyCH4IV ACGT 3 cut(s) 278, 805, 3567
HpySE526I ACGT 3 cut(s) 278, 805, 3567
HspAI GCGC 3 cut(s) 2416, 2431, 2464
KroI GCCGGC 1 cut(s) 3537
KroNI GCCGGC 1 cut(s) 3539
Ksp22I TGATCA 1 cut(s) 1609
KspAI GTTAAC 1 cut(s) 570
MabI ACCWGGT 1 cut(s) 1401
MaeII ACGT 3 cut(s) 278, 805, 3567
MaeIII GTNAC 7 cut(s) 197, 226, 1750, 2576, 2598, 3699, 3745
MflI RGATCY 8 cut(s) 238, 1170, 2113, 2234, 2327, 3044, 3268, 3467
MlsI TGGCCA 1 cut(s) 2349
MluNI TGGCCA 1 cut(s) 2349
MlyI GAGTC 9 cut(s) 616, 937, 1718, 1801, 1951, 2261, 2396, 2444, 2606
MmeI TCCRAC 7 cut(s) 46, 70, 303, 3201, 3704, 3915, 3968
Mox20I TGGCCA 1 cut(s) 2349
Mph1103I ATGCAT 1 cut(s) 482
MroNI GCCGGC 1 cut(s) 3537
MroXI GAANNNNTTC 1 cut(s) 1987
MscI TGGCCA 1 cut(s) 2349
MslI CAYNNNNRTG 5 cut(s) 392, 1491, 1700, 2079, 3348
Msp20I TGGCCA 1 cut(s) 2349
MspA1I CMGCKG 3 cut(s) 1562, 2062, 3743
MspI CCGG 3 cut(s) 3538, 3819, 3924
MvnI CGCG 1 cut(s) 2853
NaeI GCCGGC 1 cut(s) 3539
NcoI CCATGG 2 cut(s) 2074, 2664
NdeI CATATG 1 cut(s) 2311
NgoMIV GCCGGC 1 cut(s) 3537
NheI GCTAGC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 2307
NmuCI GTSAC 3 cut(s) 197, 226, 2598
NsbI TGCGCA 1 cut(s) 2432
NsiI ATGCAT 1 cut(s) 482
NspI RCATGY 1 cut(s) 2866
NspV TTCGAA 1 cut(s) 3689
OliI CACNNNNGTG 3 cut(s) 392, 1700, 3348
PagI TCATGA 1 cut(s) 771
PasI CCCWGGG 1 cut(s) 2897
PceI AGGCCT 2 cut(s) 2705, 3613
PciI ACATGT 1 cut(s) 2862
PcsI WCGNNNNNNNCGW 1 cut(s) 3799
PdiI GCCGGC 1 cut(s) 3539
PdmI GAANNNNTTC 1 cut(s) 1987
PflFI GACNNNGTC 1 cut(s) 2739
PflMI CCANNNNNTGG 3 cut(s) 1529, 2942, 3424
PfoI TCCNGGA 3 cut(s) 444, 1927, 3753
PleI GAGTC 9 cut(s) 615, 936, 1717, 1801, 1950, 2261, 2396, 2444, 2605
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 9 cut(s) 615, 936, 1717, 1801, 1950, 2261, 2396, 2444, 2605
Ppu21I YACGTR 2 cut(s) 279, 806
PpuMI RGGWCCY 1 cut(s) 2960
PscI ACATGT 1 cut(s) 2862
PshBI ATTAAT 1 cut(s) 3330
Psp124BI GAGCTC 2 cut(s) 1046, 3549
Psp5II RGGWCCY 1 cut(s) 2960
PspCI CACGTG 1 cut(s) 806
PspFI CCCAGC 2 cut(s) 1295, 2502
PspOMI GGGCCC 1 cut(s) 1900
PspPI GGNCC 9 cut(s) 68, 325, 860, 1900, 1901, 1925, 2960, 3799, 3917
PspPPI RGGWCCY 1 cut(s) 2960
PsrI GAACNNNNNNTAC 2 cut(s) 3115, 3147
PstI CTGCAG 4 cut(s) 163, 2038, 3115, 3139
PstNI CAGNNNCTG 2 cut(s) 1052, 3134
PsuI RGATCY 8 cut(s) 238, 1170, 2113, 2234, 2327, 3044, 3268, 3467
PsyI GACNNNGTC 1 cut(s) 2739
PvuII CAGCTG 2 cut(s) 2062, 3743
RseI CAYNNNNRTG 5 cut(s) 392, 1491, 1700, 2079, 3348
SacI GAGCTC 2 cut(s) 1046, 3549
Sau96I GGNCC 9 cut(s) 68, 325, 860, 1900, 1901, 1925, 2960, 3799, 3917
ScaI AGTACT 2 cut(s) 1771, 2040
SchI GAGTC 9 cut(s) 616, 937, 1718, 1801, 1951, 2261, 2396, 2444, 2606
SexAI ACCWGGT 1 cut(s) 1401
SfcI CTRYAG 9 cut(s) 159, 222, 2034, 2220, 2641, 2998, 3111, 3135, 3738
SfuI TTCGAA 1 cut(s) 3689
SinI GGWCC 5 cut(s) 68, 325, 860, 1925, 2960
SmiMI CAYNNNNRTG 5 cut(s) 392, 1491, 1700, 2079, 3348
SmlI CTYRAG 1 cut(s) 2254
SmoI CTYRAG 1 cut(s) 2254
SseBI AGGCCT 2 cut(s) 2705, 3613
SstI GAGCTC 2 cut(s) 1046, 3549
StuI AGGCCT 2 cut(s) 2705, 3613
StyI CCWWGG 3 cut(s) 340, 2074, 2664
TaiI ACGT 3 cut(s) 281, 808, 3570
TaqI TCGA 6 cut(s) 1390, 2043, 2734, 3577, 3689, 3793
TatI WGTACW 7 cut(s) 295, 1769, 2038, 2374, 2524, 2773, 3360
TauI GCSGC 3 cut(s) 119, 2153, 3883
TseFI GTSAC 3 cut(s) 197, 226, 2598
Tsp45I GTSAC 3 cut(s) 197, 226, 2598
TspGWI ACGGA 5 cut(s) 229, 2158, 2260, 2965, 3946
Tth111I GACNNNGTC 1 cut(s) 2739
Van91I CCANNNNNTGG 3 cut(s) 1529, 2942, 3424
VneI GTGCAC 1 cut(s) 2946
VpaK11BI GGWCC 5 cut(s) 68, 325, 860, 1925, 2960
VspI ATTAAT 1 cut(s) 3330
XapI RAATTY 8 cut(s) 464, 1187, 1570, 2380, 2611, 2806, 3025, 3300
XbaI TCTAGA 1 cut(s) 3056
XceI RCATGY 1 cut(s) 2866
XcmI CCANNNNNNNNNTGG 1 cut(s) 1702
XmiI GTMKAC 1 cut(s) 2437
XmnI GAANNNNTTC 1 cut(s) 1987
ZrmI AGTACT 2 cut(s) 1771, 2040
Zsp2I ATGCAT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.