Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

31304983 .. 31306087

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013422

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGAATAGCGAACCTTCTTCATTCAAATCCATGGCGCAGCAATGCCATTTCTAGGGTTTTCGGCGCATTATTCTACTCCACCAATGCCCTAGCTTCGCCACCGTCCTCACCACCCCCACTTCAGTCTCTGCACTGCAGGATTTGCTGGCTCCAAGACCAAGATCTCAAGGCTTCTATTTTCCCAATTCTCAATCACTGGGCTTCGGAAGTTAGAGACGTCAATCAACTGGAGGTCCAAGCTTTCACCGTGAAGCTCCGTAAATCCAATCACTTCAACCACGCCTTCCAGGTCTCGACGTGGATGAGCGATGAATTGAAGCTCAATCTGACTCTAGGAGACGTTGCTGCTCGGATAGATTTGATCTCAAGAGTTCACGGCCCCGAAGAAGCCGAGAAGTATTTTGATGGCGTTTCGGAGCAATTGAAAGGTTTGCAAGCATATTGTGCTCTCTTACATTGCTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

157

Amino Acids

17.65

Weight (kDa)

7.04

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	27, 277, 319, 427
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	95, 242, 256, 322
AluI	AGCT	4 cut(s)	95, 242, 256, 322
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	4 cut(s)	132, 210, 298, 333
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	39, 347
AspLEI	GCGC	2 cut(s)	39, 68
AspS9I	GGNCC	2 cut(s)	235, 380
AsuHPI	GGTGA	2 cut(s)	102, 238
AvaII	GGWCC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	2 cut(s)	51, 334
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	4 cut(s)	132, 210, 298, 333
BfaI	CTAG	3 cut(s)	54, 92, 335
BfmI	CTRYAG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	2 cut(s)	40, 348
BlsI	GCNGC	2 cut(s)	41, 349
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	235, 380
BmiI	GGNNCC	2 cut(s)	152, 382
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	152, 352
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	203, 234
Bse3DI	GCAATG	2 cut(s)	49, 457
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	2 cut(s)	49, 457
BseNI	ACTGG	2 cut(s)	203, 234
BseXI	GCAGC	2 cut(s)	51, 334
BsgI	GTGCAG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	4 cut(s)	132, 210, 298, 333
BsmBI	CGTCTC	2 cut(s)	210, 333
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	163, 363
Bsp19I	CCATGG	1 cut(s)	32
BspANI	GGCC	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	152, 382
BspMAI	CTGCAG	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	49, 457
BsrI	ACTGG	2 cut(s)	203, 234
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	163, 363
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	105, 250
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	2 cut(s)	144, 446
BstC8I	GCNNGC	2 cut(s)	149, 438
BstDEI	CTNAG	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	309
BstHHI	GCGC	2 cut(s)	39, 68
BstKTI	GATC	2 cut(s)	166, 366
BstMAI	GTCTC	4 cut(s)	132, 210, 298, 333
BstMBI	GATC	2 cut(s)	163, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 446
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	51, 334
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	32
BtgZI	GCGATG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 196
Cac8I	GCNNGC	2 cut(s)	149, 438
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	2 cut(s)	39, 68
Cfr13I	GGNCC	2 cut(s)	235, 380
CviAII	CATG	1 cut(s)	33
CviJI	RGCY	9 cut(s)	95, 151, 173, 203, 242, 256, 322, 381, 392
CviKI_1	RGCY	9 cut(s)	95, 151, 173, 203, 242, 256, 322, 381, 392
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	165, 365
DpnII	GATC	2 cut(s)	163, 363
Eco130I	CCWWGG	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
Esp3I	CGTCTC	2 cut(s)	210, 333
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 442, 465
FatI	CATG	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	40, 348
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	40, 348
FspBI	CTAG	3 cut(s)	54, 92, 335
GlaI	GCGC	2 cut(s)	38, 67
GluI	GCNGC	2 cut(s)	40, 348
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	39, 68
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	37, 66
HinP1I	GCGC	2 cut(s)	37, 66
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	2 cut(s)	102, 238
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	208, 330, 354, 418
Hpy188III	TCNNGA	2 cut(s)	295, 369
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	26, 295
HpyCH4III	ACNGT	2 cut(s)	105, 250
HpyCH4IV	ACGT	3 cut(s)	219, 299, 342
HpyCH4V	TGCA	3 cut(s)	133, 138, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 446
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	3 cut(s)	219, 299, 342
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	2 cut(s)	37, 66
Kzo9I	GATC	2 cut(s)	163, 363
LmnI	GCTCC	3 cut(s)	156, 261, 418
LpnPI	CCDG	6 cut(s)	124, 133, 184, 215, 275, 302
Lsp1109I	GCAGC	2 cut(s)	51, 334
MaeI	CTAG	3 cut(s)	54, 92, 335
MaeII	ACGT	3 cut(s)	219, 299, 342
MalI	GATC	2 cut(s)	165, 365
MboI	GATC	2 cut(s)	163, 363
MboII	GAAGA	2 cut(s)	11, 398
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	3 cut(s)	186, 314, 422
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	2 cut(s)	118, 226
MslI	CAYNNNNRTG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	144, 446
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	163, 363
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	2 cut(s)	152, 382
NmeAIII	GCCGAG	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	41, 349
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	152, 382
PspPI	GGNCC	2 cut(s)	235, 380
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	462
SatI	GCNGC	2 cut(s)	40, 348
Sau3AI	GATC	2 cut(s)	163, 363
Sau96I	GGNCC	2 cut(s)	235, 380
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	167, 367
SmoI	CTYRAG	2 cut(s)	167, 367
Sse9I	AATT	3 cut(s)	186, 314, 422
SspMI	CTAG	3 cut(s)	54, 92, 335
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	105, 250
TaiI	ACGT	3 cut(s)	222, 302, 345
TaqI	TCGA	1 cut(s)	296
TasI	AATT	3 cut(s)	186, 314, 422
TscAI	CASTG	2 cut(s)	140, 203
TseI	GCWGC	2 cut(s)	39, 347
TspDTI	ATGAA	2 cut(s)	11, 327
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	140, 203
VpaK11BI	GGWCC	1 cut(s)	235
XspI	CTAG	3 cut(s)	54, 92, 335
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.