Rroxscaffold_6G00403690

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000378
Physical Location & Seq
Forward (+)
26139487 .. 26140043
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403690.1

Sequence Viewer

Length: 459 bp
ATGGAAACTTTACGAGGGTCAGATGAAAGTAATAAGGGTTATAGAATCATGATAACCTCACTCTTGAAGATGGGCGACAGTGAGAGTGCCGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAGTCAGTTTATGATGGTGCGAAACCTGATGCAAAGTCATGGTATTCTTTGGCAAAAGTGCATCCTGATCATGATCAAACTGAGAAGGGAGTTGAGTTGACGAGAAAAGTACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACAAGGATGTTTTGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGTGCCAAGGAATATATAAAGCTCCTCACTGAGAAGAATATTATCACCGTGATTACACATGAGAGACTGTTGAATAAGATAAATAAGGCGGATTCAAACTCTGTAACACCAGGTGAAATGGAAGGGGATGGTCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

152

Amino Acids

17.11

Weight (kDa)

5.69

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 4 cut(s) 67, 104, 391, 414
AjnI CCWGG 2 cut(s) 247, 427
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 290, 376
AlwI GGATC 1 cut(s) 305
ApeKI GCWGC 2 cut(s) 244, 278
AsuHPI GGTGA 2 cut(s) 355, 443
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 256, 265
BccI CCATC 3 cut(s) 64, 128, 440
BciT130I CCWGG 2 cut(s) 249, 429
BclI TGATCA 2 cut(s) 187, 193
BcoDI GTCTC 2 cut(s) 290, 376
BglII AGATCT 1 cut(s) 96
BisI GCNGC 2 cut(s) 245, 279
BlsI GCNGC 2 cut(s) 246, 280
BmcAI AGTACT 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 249, 429
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 2 cut(s) 249, 429
BmsI GCATC 2 cut(s) 139, 190
BpiI GAAGAC 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 249, 429
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 181, 274, 451
BseJI GATNNNNATC 1 cut(s) 192
BseMII CTCAG 3 cut(s) 131, 192, 339
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 256, 265
BsgI GTGCAG 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 290, 376
Bsp143I GATC 4 cut(s) 96, 187, 193, 310
BspACI CCGC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 130, 193, 340
BspHI TCATGA 2 cut(s) 48, 190
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 4 cut(s) 96, 187, 193, 310
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 249, 429
Bst4CI ACNGT 3 cut(s) 80, 367, 387
Bst6I CTCTTC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 117, 201, 348
BstF5I GGATG 3 cut(s) 181, 274, 451
BstKTI GATC 4 cut(s) 99, 190, 196, 313
BstMAI GTCTC 2 cut(s) 290, 376
BstMBI GATC 4 cut(s) 96, 187, 193, 310
BstNI CCWGG 2 cut(s) 249, 429
BstSCI CCNGG 2 cut(s) 247, 427
BstV1I GCAGC 2 cut(s) 256, 265
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BtsCI GGATG 3 cut(s) 181, 274, 451
BtsIMutI CAGTG 2 cut(s) 85, 345
CciI TCATGA 2 cut(s) 48, 190
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 49, 159, 191, 377
CviJI RGCY 4 cut(s) 239, 247, 278, 340
CviKI_1 RGCY 4 cut(s) 239, 247, 278, 340
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 3 cut(s) 117, 201, 348
DpnI GATC 4 cut(s) 98, 189, 195, 312
DpnII GATC 4 cut(s) 96, 187, 193, 310
DraIII CACNNNGTG 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 247, 427
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 4 cut(s) 52, 162, 194, 380
FaiI YATR 8 cut(s) 42, 50, 132, 160, 192, 333, 335, 378
FatI CATG 4 cut(s) 48, 158, 190, 376
FbaI TGATCA 2 cut(s) 187, 193
Fnu4HI GCNGC 2 cut(s) 245, 279
FokI GGATG 2 cut(s) 168, 281
Fsp4HI GCNGC 2 cut(s) 245, 279
GluI GCNGC 2 cut(s) 245, 279
Hin1II CATG 4 cut(s) 52, 162, 194, 380
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 3 cut(s) 45, 113, 410
HphI GGTGA 2 cut(s) 355, 443
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 5 cut(s) 49, 64, 185, 191, 314
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 2 cut(s) 199, 434
HpyCH4III ACNGT 3 cut(s) 80, 367, 387
HpyCH4V TGCA 3 cut(s) 152, 181, 244
HpyF3I CTNAG 3 cut(s) 117, 201, 348
Hsp92II CATG 4 cut(s) 52, 162, 194, 380
Ksp22I TGATCA 2 cut(s) 187, 193
Kzo9I GATC 4 cut(s) 96, 187, 193, 310
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 9 cut(s) 159, 198, 234, 261, 295, 321, 327, 414, 441
Lsp1109I GCAGC 2 cut(s) 256, 265
LweI GCATC 2 cut(s) 139, 190
MabI ACCWGGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 421
MalI GATC 4 cut(s) 98, 189, 195, 312
MboI GATC 4 cut(s) 96, 187, 193, 310
MboII GAAGA 5 cut(s) 79, 106, 116, 268, 364
MflI RGATCY 1 cut(s) 96
MluCI AATT 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 4 cut(s) 8, 67, 310, 353
MspR9I CCNGG 2 cut(s) 249, 429
MvaI CCWGG 2 cut(s) 249, 429
NdeII GATC 4 cut(s) 96, 187, 193, 310
NlaIII CATG 4 cut(s) 52, 162, 194, 380
NlaIV GGNNCC 1 cut(s) 322
NmeAIII GCCGAG 1 cut(s) 115
PagI TCATGA 2 cut(s) 48, 190
PfeI GAWTC 3 cut(s) 45, 113, 410
PkrI GCNGC 2 cut(s) 246, 280
Psp6I CCWGG 2 cut(s) 247, 427
PspGI CCWGG 2 cut(s) 247, 427
PspN4I GGNNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SatI GCNGC 2 cut(s) 245, 279
Sau3AI GATC 4 cut(s) 96, 187, 193, 310
ScaI AGTACT 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 249, 429
SetI ASST 5 cut(s) 59, 148, 310, 342, 433
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 2 cut(s) 139, 190
Sse9I AATT 1 cut(s) 454
SsiI CCGC 1 cut(s) 407
SspI AATATT 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 247, 427
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 80, 367, 387
TaqI TCGA 1 cut(s) 451
TasI AATT 1 cut(s) 454
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 3 cut(s) 45, 113, 410
TscAI CASTG 2 cut(s) 85, 352
TseI GCWGC 2 cut(s) 244, 278
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 2 cut(s) 85, 352
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.