Rh3CG241100

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000378
Physical Location & Seq
Reverse (-)
23098224 .. 23105459
7236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG241100.1

Sequence Viewer

Length: 555 bp
ATGCCACAATGTGCAGCACTAGGGAAGAAAGATAATGTTATGAGACTCTGGAAACTTTACAAAGGTCAGATGAAAGTATACAATAAGGGTTATAGAATCATGATAACCTCACTATTGAAGATTGGCGACAGTGAGAGTGCTGAGAAGATCTTTGAAGAGTGGGAATCTCAGCAGTCAGTTTATGATGTTCATATCCCAAATCACTTGATTGCTGCTTATTCCTGTAAAGGTCTTCTTGACAAGGCCGAAGCTATTATTGAAAGGGTTATACTGAAGGGTGCGAAACCTGATGCAAAGTCATGGTATTCTTTGGCAAAAGTGCATCCTGATCATGATCAAACTGAGAAGGCAATTGAGTTGACGAGAAAAGCATTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACACGGATGTTTGGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGTGCCAAGGAATATATAAAGCTCCTCACCGATGAGAATGTTATCACCGTGATTACACAAGAGAGACTGTTGAATAAGATGAATAAGACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

8.8

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 78
AclWI GGATC 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 11
AgsI TTSAA 4 cut(s) 118, 155, 260, 532
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 251, 481
AluI AGCT 2 cut(s) 251, 481
Alw26I GTCTC 3 cut(s) 37, 431, 517
AlwI GGATC 1 cut(s) 446
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 4 cut(s) 14, 212, 385, 419
AsuHPI GGTGA 2 cut(s) 478, 496
BanI GGYRCC 1 cut(s) 461
BbsI GAAGAC 2 cut(s) 224, 404
BbvI GCAGC 4 cut(s) 26, 199, 397, 406
BciT130I CCWGG 1 cut(s) 390
BclI TGATCA 2 cut(s) 328, 334
BcoDI GTCTC 3 cut(s) 37, 431, 517
BfaI CTAG 1 cut(s) 20
BglII AGATCT 1 cut(s) 147
BisI GCNGC 4 cut(s) 15, 213, 386, 420
BlsI GCNGC 4 cut(s) 16, 214, 387, 421
Bme1390I CCNGG 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 2 cut(s) 280, 331
BpiI GAAGAC 2 cut(s) 224, 404
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 2 cut(s) 322, 415
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 3 cut(s) 132, 182, 333
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 4 cut(s) 26, 199, 397, 406
BsgI GTGCAG 2 cut(s) 33, 404
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 461
BsmAI GTCTC 3 cut(s) 37, 431, 517
BsnI GGCC 1 cut(s) 245
Bsp143I GATC 4 cut(s) 147, 328, 334, 451
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 3 cut(s) 133, 181, 334
BspHI TCATGA 2 cut(s) 99, 331
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 4 cut(s) 147, 328, 334, 451
BssNAI GTATAC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 3 cut(s) 131, 508, 528
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 141, 168, 342
BstF5I GGATG 2 cut(s) 322, 415
BstKTI GATC 4 cut(s) 150, 331, 337, 454
BstMAI GTCTC 3 cut(s) 37, 431, 517
BstMBI GATC 4 cut(s) 147, 328, 334, 451
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 26, 199, 397, 406
BstV2I GAAGAC 2 cut(s) 224, 404
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BstZ17I GTATAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 322, 415
BtsIMutI CAGTG 1 cut(s) 136
CciI TCATGA 2 cut(s) 99, 331
CviAII CATG 3 cut(s) 100, 300, 332
CviJI RGCY 6 cut(s) 245, 251, 380, 388, 419, 481
CviKI_1 RGCY 6 cut(s) 245, 251, 380, 388, 419, 481
DdeI CTNAG 3 cut(s) 141, 168, 342
DpnI GATC 4 cut(s) 149, 330, 336, 453
DpnII GATC 4 cut(s) 147, 328, 334, 451
DraIII CACNNNGTG 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 103, 303, 335
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 99, 299, 331
FbaI TGATCA 2 cut(s) 328, 334
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 4 cut(s) 15, 213, 386, 420
FokI GGATG 2 cut(s) 309, 422
Fsp4HI GCNGC 4 cut(s) 15, 213, 386, 420
FspBI CTAG 1 cut(s) 20
GluI GCNGC 4 cut(s) 15, 213, 386, 420
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 3 cut(s) 103, 303, 335
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 3 cut(s) 45, 96, 164
HphI GGTGA 2 cut(s) 478, 496
Hpy166II GTNNAC 2 cut(s) 79, 360
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 6 cut(s) 49, 100, 236, 326, 332, 455
Hpy8I GTNNAC 2 cut(s) 79, 360
HpyAV CCTTC 2 cut(s) 268, 340
HpyCH4III ACNGT 3 cut(s) 131, 508, 528
HpyCH4V TGCA 4 cut(s) 14, 293, 322, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 3 cut(s) 141, 168, 342
Hsp92II CATG 3 cut(s) 103, 303, 335
Ksp22I TGATCA 2 cut(s) 328, 334
Kzo9I GATC 4 cut(s) 147, 328, 334, 451
LmnI GCTCC 1 cut(s) 486
LpnPI CCDG 9 cut(s) 34, 235, 300, 339, 375, 402, 436, 462, 468
Lsp1109I GCAGC 4 cut(s) 26, 199, 397, 406
LweI GCATC 2 cut(s) 280, 331
MaeI CTAG 1 cut(s) 20
MalI GATC 4 cut(s) 149, 330, 336, 453
MboI GATC 4 cut(s) 147, 328, 334, 451
MboII GAAGA 6 cut(s) 37, 130, 157, 167, 224, 409
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 147
MluCI AATT 1 cut(s) 351
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 3 cut(s) 118, 451, 494
MspR9I CCNGG 1 cut(s) 390
MunI CAATTG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 4 cut(s) 147, 328, 334, 451
NlaIII CATG 3 cut(s) 103, 303, 335
NlaIV GGNNCC 1 cut(s) 463
PagI TCATGA 2 cut(s) 99, 331
PfeI GAWTC 2 cut(s) 96, 164
PkrI GCNGC 4 cut(s) 16, 214, 387, 421
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 147
SatI GCNGC 4 cut(s) 15, 213, 386, 420
Sau3AI GATC 4 cut(s) 147, 328, 334, 451
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 390
SetI ASST 7 cut(s) 67, 110, 232, 253, 289, 451, 483
SfaNI GCATC 2 cut(s) 280, 331
Sse9I AATT 1 cut(s) 351
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 131, 508, 528
TasI AATT 1 cut(s) 351
TfiI GAWTC 2 cut(s) 96, 164
TscAI CASTG 1 cut(s) 136
TseI GCWGC 4 cut(s) 14, 212, 385, 419
TspDTI ATGAA 3 cut(s) 86, 179, 554
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.