Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000201.1

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Forward (+)

39890 .. 40225

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000201.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggaagatagaggaattggtcataacagctacagattgcgggttttgttgggttcgtatgcagcgaattgtgatgtggagcggatggagaaggttatgatgctgatggaagaagatggagtggtcaaaatggactggaatggttatgtttttgcggcggatgcttttcggaaggctggacaggtggagagggcattgacattgctagggacagcggagcagaaaattcgtggcaaggaggaaaggagaattgcttacgagcacctgatcacattatatgctgctgctggtgataaaaggcaggtctttcgaatttggggttgtacagaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

111

Amino Acids

12.71

Weight (kDa)

6.73

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccBSI	CCGCTC	1 cut(s)	82
AciI	CCGC	5 cut(s)	40, 82, 155, 158, 215
AcsI	RAATTY	2 cut(s)	225, 312
AfaI	GTAC	1 cut(s)	325
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	62, 281, 284
ApoI	RAATTY	2 cut(s)	225, 312
AsuHPI	GGTGA	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	74, 268, 271
BccI	CCATC	3 cut(s)	79, 100, 110
BcgI	CGANNNNNNTGC	4 cut(s)	209, 243, 290, 324
BclI	TGATCA	1 cut(s)	267
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	4 cut(s)	63, 156, 282, 285
BlsI	GCNGC	4 cut(s)	64, 157, 283, 286
BmsI	GCATC	2 cut(s)	90, 151
Bpu14I	TTCGAA	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	90, 166
BseMI	GCAATG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	74, 268, 271
BsiHKAI	GWGCWC	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	5 cut(s)	40, 82, 155, 158, 215
BspMI	ACCTGC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	90, 166
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	74, 268, 271
BtsCI	GGATG	2 cut(s)	90, 166
BveI	ACCTGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	324
CviJI	RGCY	2 cut(s)	30, 176
CviKI_1	RGCY	2 cut(s)	30, 176
CviQI	GTAC	1 cut(s)	324
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	173
FaiI	YATR	6 cut(s)	24, 60, 98, 147, 277, 279
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	1 cut(s)	33
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	63, 156, 282, 285
FokI	GGATG	2 cut(s)	97, 173
Fsp4HI	GCNGC	4 cut(s)	63, 156, 282, 285
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	4 cut(s)	63, 156, 282, 285
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	85, 166
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	79, 217
LpnPI	CCDG	6 cut(s)	121, 162, 167, 273, 278, 287
Lsp1109I	GCAGC	3 cut(s)	74, 268, 271
LweI	GCATC	2 cut(s)	90, 151
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	269
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	1 cut(s)	267
MboII	GAAGA	3 cut(s)	17, 122, 125
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	5 cut(s)	15, 67, 225, 249, 312
MnlI	CCTC	3 cut(s)	5, 183, 232
MspA1I	CMGCKG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	64, 157, 283, 286
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SatI	GCNGC	4 cut(s)	63, 156, 282, 285
Sau3AI	GATC	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	32, 96, 186, 267, 306
SfaNI	GCATC	2 cut(s)	90, 151
SfcI	CTRYAG	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	310
Sse9I	AATT	5 cut(s)	15, 67, 225, 249, 312
SsiI	CCGC	5 cut(s)	40, 82, 155, 158, 215
SspMI	CTAG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	15, 67, 225, 249, 312
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	62, 281, 284
XapI	RAATTY	2 cut(s)	225, 312
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.