Rh3AG214100

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000378
Physical Location & Seq
Reverse (-)
21576378 .. 21578591
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG214100.1

Sequence Viewer

Length: 1500 bp
ATGATGAAGCACTCACATTTCAGCGCCCTATTCAACACTCTCTACTCCCGTTTCTGTCACGTTTCGCCGTACTCAACGGCGGCACCCAAATCTCCTCGGAAGCTCTGGAAGGACTCGCTGAACACACTCTACCGTCGGATCTGTGAGAGCGATTTTCAGTCCTCCGTTTTACCGATTCTGTACCAGTGGGGCCAAGAAGGCCAAACGCTAGATAGAGATGATCGCGTCACTATCATCAAGGAGCTCAAGTACCACAAAGACTACGTTCGAGCTCTTGAGGTGTCCATGTGGATGCGTGATGCTGCACTTTTGCCCACTGACGTAGCCATCCGGCTCGACTTGATTGCAAAAGTTCAAGGAATAGAAGAAGCTGAGAATTATTTTAACTACACTCCCAAAAAATTGAAAGGCGTTCAGGTTTACCATGCTCTCCTCAACTGCTATGCTCGTGAAAAGCAGTTGGAAAAAGCAGAGGCCACCATGCAGAAGATGAGGGATTTGGGGTTCTGTAGGACGTCATTGTCATACAATGTTTTGCTCAATTTGTATTATAAGACTGGACACCGTGCAAAATTTGACAGTCTGATGAGTGAAATGGAAGAGAATGGCATCGGTTTTGACAGATTCACATATGGGATCAGACTCAGTGCAGCTGCAGCTGCTTCTGATCTCGAGGGAATTGACAAGATTCTGGCAGAATACGAATCCGATCCTAAGAGTCTTGTGAACTGGACTACTTATGCCGTTGCAGCAAATGGTTATACAAAAGCAGGAGCTGTGGACAAGGCTTTAGCAATGCTAAAGAGATATGAGGAACAGATACCAAGTTCTAAAAGGCAGAGGCCAGCATATGAGCAACTTATGACGCGGTACGCAGTACTAGGGAAAAAAGACGATACTTTGAGACTATGGAAATGTTACAAGGAGCAGATGAAAGTATACAACAGGGGTTATCTATGCATAATTACCTCACTCTTGAAGTCTGAGGATATTGAGAGTGCTGAGAAGATCTTTGAAGAGTGGGAATCTGAGCATGCAAATTATGATATTCGTATCCCAAATACCTTGATTGGTGCTTATACCAGGAATGGTTTTCTTGACAAGGCTGAAGCCATTATGAGCAGGATAAGATTGAAGGATGGGAAACCTAATCATACGACATGGATTTATTTGGCCAAGGGGTATCTTGATCAAGGTCAAATTGAGAAGGCACTTGAATCGGCAACAAAAGCAGTTTCTGCTGCTCCGCCAGGGTGGATGCCGAAAAAGGATGTTGTGGTCGCATGTCTGGAAAACTTCAAACTGAAAGCAGATCTGGAAGGAGCCAAGGAATTCATAAAACTCGTTGTGGATAAGAATATGCAGGAGAGATTGTTGAATCATAAGAATATGCAGGAGGCGTTGTTGAATCATATCAAAAATGAGAATTCGACTGCTGCAGTAGGCGATTGGAATGGGCTTGTCCAAAGGTATATTCAGATGGTGGAATCTGGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

499

Amino Acids

57.31

Weight (kDa)

8.72

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 173 - 216 2.8e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AasI GACNNNNNNGTC 1 cut(s) 520
AatII GACGTC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 939
AccII CGCG 2 cut(s) 225, 868
AciI CCGC 3 cut(s) 80, 868, 1247
AclWI GGATC 3 cut(s) 146, 644, 704
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 3 cut(s) 572, 1331, 1426
AcuI CTGAAG 1 cut(s) 1128
AcyI GRCGYC 1 cut(s) 515
AfaI GTAC 5 cut(s) 71, 182, 251, 872, 879
AjnI CCWGG 2 cut(s) 1082, 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 1458, 1490
AloI GAACNNNNNNTCC 2 cut(s) 488, 520
AluBI AGCT 7 cut(s) 103, 244, 272, 371, 653, 659, 776
AluI AGCT 7 cut(s) 103, 244, 272, 371, 653, 659, 776
Alw21I GWGCWC 2 cut(s) 246, 274
Alw26I GTCTC 1 cut(s) 898
AlwI GGATC 3 cut(s) 146, 644, 704
AlwNI CAGNNNCTG 2 cut(s) 776, 1238
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 5 cut(s) 190, 199, 474, 842, 1173
ApeKI GCWGC 8 cut(s) 302, 650, 653, 656, 659, 749, 1241, 1436
ApoI RAATTY 3 cut(s) 572, 1331, 1426
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 671
BalI TGGCCA 1 cut(s) 1175
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 2 cut(s) 246, 274
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 246, 274
BbvI GCAGC 8 cut(s) 289, 640, 646, 662, 668, 761, 1228, 1423
BccI CCATC 3 cut(s) 335, 1133, 1474
BceAI ACGGC 3 cut(s) 52, 93, 728
BcgI CGANNNNNNTGC 4 cut(s) 326, 360, 1200, 1234
BciT130I CCWGG 2 cut(s) 1084, 1251
BciVI GTATCC 1 cut(s) 1064
BclI TGATCA 1 cut(s) 1189
BcoDI GTCTC 1 cut(s) 898
BfaI CTAG 2 cut(s) 209, 881
BfmI CTRYAG 3 cut(s) 508, 654, 1437
BfoI RGCGCY 1 cut(s) 27
BfuI GTATCC 1 cut(s) 1064
BglI GCCNNNNNGGC 1 cut(s) 198
BglII AGATCT 2 cut(s) 1008, 1312
BisI GCNGC 9 cut(s) 81, 303, 651, 654, 657, 660, 750, 1242, 1437
BlsI GCNGC 9 cut(s) 82, 304, 652, 655, 658, 661, 751, 1243, 1438
BmcAI AGTACT 1 cut(s) 879
Bme1390I CCNGG 2 cut(s) 1084, 1251
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 84, 191, 1324
BmrFI CCNGG 2 cut(s) 1084, 1251
BmsI GCATC 4 cut(s) 282, 289, 618, 1248
BpuEI CTTGAG 2 cut(s) 230, 296
BsaHI GRCGYC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 95, 1176, 1250, 1326
BsaXI ACNNNNNCTCC 6 cut(s) 233, 263, 1358, 1388, 1388, 1418
Bse1I ACTGG 3 cut(s) 184, 562, 734
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 2 cut(s) 1084, 1251
BseDI CCNNGG 4 cut(s) 95, 1176, 1250, 1326
BseGI GGATG 5 cut(s) 297, 327, 1144, 1263, 1276
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 5 cut(s) 363, 658, 975, 993, 1020
BseNI ACTGG 3 cut(s) 184, 562, 734
BseRI GAGGAG 2 cut(s) 84, 422
BseXI GCAGC 8 cut(s) 289, 640, 646, 662, 668, 761, 1228, 1423
BsgI GTGCAG 2 cut(s) 288, 669
Bsh1236I CGCG 2 cut(s) 225, 868
BshFI GGCC 5 cut(s) 192, 201, 476, 844, 1175
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 246, 274
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 898
BsnI GGCC 5 cut(s) 192, 201, 476, 844, 1175
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 2 cut(s) 246, 274
Bsp143I GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
BspACI CCGC 3 cut(s) 80, 868, 1247
BspANI GGCC 5 cut(s) 192, 201, 476, 844, 1175
BspCNI CTCAG 5 cut(s) 364, 657, 976, 994, 1021
BspFNI CGCG 2 cut(s) 225, 868
BspLI GGNNCC 3 cut(s) 84, 191, 1324
BspMAI CTGCAG 2 cut(s) 658, 1441
BspPI GGATC 3 cut(s) 146, 644, 704
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 3 cut(s) 184, 562, 734
BssECI CCNNGG 4 cut(s) 95, 1176, 1250, 1326
BssMI GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
BssNAI GTATAC 1 cut(s) 940
BssNI GRCGYC 1 cut(s) 515
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 1176, 1326
Bst1107I GTATAC 1 cut(s) 940
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 1084, 1251
Bst4CI ACNGT 3 cut(s) 134, 566, 581
Bst6I CTCTTC 2 cut(s) 594, 1011
BstACI GRCGYC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstC8I GCNNGC 2 cut(s) 846, 1035
BstDEI CTNAG 6 cut(s) 372, 644, 714, 984, 1002, 1029
BstF5I GGATG 5 cut(s) 297, 327, 1144, 1263, 1276
BstFNI CGCG 2 cut(s) 225, 868
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 8 cut(s) 141, 223, 639, 670, 712, 1011, 1192, 1315
BstMAI GTCTC 1 cut(s) 898
BstMBI GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
BstMWI GCNNNNNNNGC 6 cut(s) 198, 656, 659, 749, 1229, 1238
BstNI CCWGG 2 cut(s) 1084, 1251
BstNSI RCATGY 2 cut(s) 1037, 1287
BstSCI CCNGG 2 cut(s) 1082, 1249
BstSFI CTRYAG 3 cut(s) 508, 654, 1437
BstUI CGCG 2 cut(s) 225, 868
BstV1I GCAGC 8 cut(s) 289, 640, 646, 662, 668, 761, 1228, 1423
BstX2I RGATCY 3 cut(s) 138, 1008, 1312
BstYI RGATCY 3 cut(s) 138, 1008, 1312
BstZ17I GTATAC 1 cut(s) 940
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 5 cut(s) 192, 201, 476, 844, 1175
BtsCI GGATG 5 cut(s) 297, 327, 1144, 1263, 1276
BtsIMutI CAGTG 3 cut(s) 191, 315, 652
Cac8I GCNNGC 2 cut(s) 846, 1035
CaiI CAGNNNCTG 2 cut(s) 776, 1238
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 2 cut(s) 214, 874
Csp6I GTAC 5 cut(s) 70, 181, 250, 871, 878
CviAII CATG 6 cut(s) 286, 425, 481, 1034, 1161, 1284
CviQI GTAC 5 cut(s) 70, 181, 250, 871, 878
DdeI CTNAG 6 cut(s) 372, 644, 714, 984, 1002, 1029
DpnI GATC 8 cut(s) 140, 222, 638, 669, 711, 1010, 1191, 1314
DpnII GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 2 cut(s) 594, 1011
EarI CTCTTC 2 cut(s) 594, 1011
EciI GGCGGA 1 cut(s) 1236
Ecl136II GAGCTC 2 cut(s) 244, 272
Eco130I CCWWGG 2 cut(s) 1176, 1326
Eco24I GRGCYC 2 cut(s) 246, 274
Eco53kI GAGCTC 2 cut(s) 244, 272
Eco57I CTGAAG 1 cut(s) 1128
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 2 cut(s) 244, 272
EcoRI GAATTC 2 cut(s) 1331, 1426
EcoRII CCWGG 2 cut(s) 1082, 1249
EcoT14I CCWWGG 2 cut(s) 1176, 1326
EcoT22I ATGCAT 1 cut(s) 962
EcoT38I GRGCYC 2 cut(s) 246, 274
ErhI CCWWGG 2 cut(s) 1176, 1326
FaeI CATG 6 cut(s) 289, 428, 484, 1037, 1164, 1287
FatI CATG 6 cut(s) 285, 424, 480, 1033, 1160, 1283
FauNDI CATATG 2 cut(s) 631, 850
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 9 cut(s) 81, 303, 651, 654, 657, 660, 750, 1242, 1437
FokI GGATG 5 cut(s) 304, 314, 1151, 1270, 1283
FriOI GRGCYC 2 cut(s) 246, 274
Fsp4HI GCNGC 9 cut(s) 81, 303, 651, 654, 657, 660, 750, 1242, 1437
FspBI CTAG 2 cut(s) 209, 881
GlaI GCGC 1 cut(s) 25
GluI GCNGC 9 cut(s) 81, 303, 651, 654, 657, 660, 750, 1242, 1437
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 5 cut(s) 192, 201, 476, 844, 1175
HapII CCGG 1 cut(s) 331
HgaI GACGC 2 cut(s) 214, 874
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 6 cut(s) 289, 428, 484, 1037, 1164, 1287
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 4 cut(s) 421, 727, 781, 940
Hpy188I TCNGA 9 cut(s) 99, 138, 585, 641, 667, 709, 985, 1030, 1479
Hpy188III TCNNGA 9 cut(s) 106, 275, 449, 671, 976, 1097, 1187, 1289, 1316
Hpy8I GTNNAC 4 cut(s) 421, 727, 781, 940
Hpy99I CGWCG 1 cut(s) 138
HpyAV CCTTC 5 cut(s) 103, 191, 1129, 1201, 1313
HpyCH4III ACNGT 3 cut(s) 134, 566, 581
HpyCH4IV ACGT 4 cut(s) 60, 264, 321, 515
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 656, 659, 749, 1229, 1238
HpyF3I CTNAG 6 cut(s) 372, 644, 714, 984, 1002, 1029
HpySE526I ACGT 4 cut(s) 60, 264, 321, 515
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 6 cut(s) 289, 428, 484, 1037, 1164, 1287
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
LmnI GCTCC 5 cut(s) 241, 773, 925, 1249, 1322
Lsp1109I GCAGC 8 cut(s) 289, 640, 646, 662, 668, 761, 1228, 1423
LweI GCATC 4 cut(s) 282, 289, 618, 1248
MaeI CTAG 2 cut(s) 209, 881
MaeII ACGT 4 cut(s) 60, 264, 321, 515
MaeIII GTNAC 3 cut(s) 56, 226, 917
MalI GATC 8 cut(s) 140, 222, 638, 669, 711, 1010, 1191, 1314
MboI GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
MboII GAAGA 5 cut(s) 377, 499, 611, 1018, 1028
MflI RGATCY 3 cut(s) 138, 1008, 1312
MhlI GDGCHC 2 cut(s) 246, 274
MlsI TGGCCA 1 cut(s) 1175
MluNI TGGCCA 1 cut(s) 1175
MlyI GAGTC 3 cut(s) 107, 636, 727
MmeI TCCRAC 2 cut(s) 116, 441
Mox20I TGGCCA 1 cut(s) 1175
Mph1103I ATGCAT 1 cut(s) 962
MscI TGGCCA 1 cut(s) 1175
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 1175
MspA1I CMGCKG 2 cut(s) 653, 659
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 2 cut(s) 1084, 1251
MvaI CCWGG 2 cut(s) 1084, 1251
MvnI CGCG 2 cut(s) 225, 868
MwoI GCNNNNNNNGC 6 cut(s) 198, 656, 659, 749, 1229, 1238
NdeI CATATG 2 cut(s) 631, 850
NdeII GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
NlaIII CATG 6 cut(s) 289, 428, 484, 1037, 1164, 1287
NlaIV GGNNCC 3 cut(s) 84, 191, 1324
NmuCI GTSAC 2 cut(s) 56, 226
NsiI ATGCAT 1 cut(s) 962
NspI RCATGY 2 cut(s) 1037, 1287
PaeI GCATGC 1 cut(s) 1037
PaeR7I CTCGAG 1 cut(s) 671
PfeI GAWTC 9 cut(s) 175, 624, 688, 704, 1025, 1217, 1378, 1408, 1487
PkrI GCNGC 9 cut(s) 82, 304, 652, 655, 658, 661, 751, 1243, 1438
PleI GAGTC 3 cut(s) 107, 636, 726
PpsI GAGTC 3 cut(s) 107, 636, 726
PsiI TTATAA 1 cut(s) 552
Psp124BI GAGCTC 2 cut(s) 246, 274
Psp6I CCWGG 2 cut(s) 1082, 1249
PspGI CCWGG 2 cut(s) 1082, 1249
PspN4I GGNNCC 3 cut(s) 84, 191, 1324
PspPI GGNCC 1 cut(s) 190
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
PstI CTGCAG 2 cut(s) 658, 1441
PstNI CAGNNNCTG 2 cut(s) 776, 1238
PsuI RGATCY 3 cut(s) 138, 1008, 1312
PvuII CAGCTG 2 cut(s) 653, 659
RsaI GTAC 5 cut(s) 71, 182, 251, 872, 879
RsaNI GTAC 5 cut(s) 70, 181, 250, 871, 878
RseI CAYNNNNRTG 1 cut(s) 290
SacI GAGCTC 2 cut(s) 246, 274
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 9 cut(s) 81, 303, 651, 654, 657, 660, 750, 1242, 1437
Sau3AI GATC 8 cut(s) 138, 220, 636, 667, 709, 1008, 1189, 1312
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 879
SchI GAGTC 3 cut(s) 107, 636, 727
ScrFI CCNGG 2 cut(s) 1084, 1251
SduI GDGCHC 2 cut(s) 246, 274
SfaNI GCATC 4 cut(s) 282, 289, 618, 1248
SfcI CTRYAG 3 cut(s) 508, 654, 1437
SfiI GGCCNNNNNGGCC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 671
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 245, 275, 671
SmoI CTYRAG 3 cut(s) 245, 275, 671
SphI GCATGC 1 cut(s) 1037
SsiI CCGC 3 cut(s) 80, 868, 1247
SspMI CTAG 2 cut(s) 209, 881
SstI GAGCTC 2 cut(s) 246, 274
StyD4I CCNGG 2 cut(s) 1082, 1249
StyI CCWWGG 2 cut(s) 1176, 1326
TaaI ACNGT 3 cut(s) 134, 566, 581
TaiI ACGT 4 cut(s) 63, 267, 324, 518
TaqI TCGA 4 cut(s) 268, 336, 672, 1430
TatI WGTACW 1 cut(s) 877
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 9 cut(s) 175, 624, 688, 704, 1025, 1217, 1378, 1408, 1487
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 3 cut(s) 191, 322, 652
TseFI GTSAC 2 cut(s) 56, 226
TseI GCWGC 8 cut(s) 302, 650, 653, 656, 659, 749, 1241, 1436
Tsp45I GTSAC 2 cut(s) 56, 226
TspDTI ATGAA 3 cut(s) 20, 947, 1324
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 3 cut(s) 191, 322, 652
XapI RAATTY 3 cut(s) 572, 1331, 1426
XceI RCATGY 2 cut(s) 1037, 1287
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 2 cut(s) 209, 881
ZraI GACGTC 1 cut(s) 516
ZrmI AGTACT 1 cut(s) 879
Zsp2I ATGCAT 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.