Rh3BG247600

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000378
Physical Location & Seq
Reverse (-)
23595841 .. 23597286
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG247600.1

Sequence Viewer

Length: 1236 bp
ATGTGGATGACTGACAAAAGGTACTTTGAACTTTCTCCGGCTGATGCAGCGGTTCGACTGGACTTGATTGCAAAAGTTCATGGAGTGGAACAAGCTGAGAGTTATTTTGACAACATTCCCATACAATTGAAATCGCTTGGGGTGTACTTGGCTCTGCTCAACTGCTATGCCCATGCAAAGTTTGTTGAGAAAGCGGAGGCCACAATGCAGAAGATTAGGGATTTGGGGCTCGCTAGGACGTCGTTGGCTTACAACAATTTGCTCAATTTGTATTATCAGACTGGAAAGCGTGATAAGCTTGATGTGCTGGTGAATGAAATGGAGGAGAAGGGCATCCAGTGTAACAAATTCACATACGGGATCCTGCTCAGTGCATATGCTGCTGCTTCTGACTTTGAGGCAGTTGAGAAGATTCTTGCACAATGGGAATCACATCCTGATTGTCGTTTGGATTGGATTAACTATGCGGTTGTGGCAAATGTTTATATAAAAGCAGGAAATGAGGACAAGGCTTTGGAAATGCTAAAGAAGTCTGAGGAGCTGATACCAAGTTCTGAAAGACGGAGGGAAGCATACGAGCACCTTGTGCCACAATATGCAGCACTAGGGAAGAAAGATAATGTTGTGAGACTATGGGAACTTTACAAGGGTCAGATGAAAGTATACAGTAAAGGTTATAGAATCATGATAACCTCACTCTTGAAGATTGGTGACAGTGAGAGTGCCAAGAAGATCTTTGAAGAGTGGGAATCTCAGCAATCAGTTTATGATGTTCGTATCCCAAATCACTTGATTGCTGCTTATGCCAGAAAAGGTCTTCTTGACAAGGCCGAAGCTATTATTGAAAGGGTTGTACTGAAGGGTGCGAAACCTGATGCAAAGTCATGGTATTCTTTGGCAAAAGTGCATCTTGATCATGATCAAACTGAGAAGGCAGTTGAGTTGACGAGAAAAGCACTTTTGGCTGTGCAGCCTGGTTGGAAGACCAACAAGGATGTTTGGGCTGCCTGTCTCAACTACTTGATAAAGAAACCTGATCCAGAGGGCGCCAAGGAATATATAAAGCTACTCACTGATAAGAATGTTATCACCGTGATTACACAGGAGAGACTGTTGAATAACATAAATAAGGCGGATTCAAACTCTGTAACACCAGGCGAAATGGAAGGGGATGGTCGAAATGGAGATGAAGAAGCAAGTGAAGTTTCAGAAGTGGAGGGGAGTCGTAGCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

411

Amino Acids

46.6

Weight (kDa)

6.09

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 81 - 127 1.3e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 1046
AccI GTMKAC 1 cut(s) 663
AciI CCGC 4 cut(s) 50, 194, 467, 1133
AclWI GGATC 3 cut(s) 355, 368, 1031
AcsI RAATTY 1 cut(s) 347
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 2 cut(s) 239, 1047
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 3 cut(s) 23, 146, 855
AgsI TTSAA 7 cut(s) 29, 130, 703, 740, 845, 1117, 1140
AjnI CCWGG 2 cut(s) 973, 1153
AluBI AGCT 6 cut(s) 95, 298, 541, 836, 1066, 1230
AluI AGCT 6 cut(s) 95, 298, 541, 836, 1066, 1230
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 3 cut(s) 622, 1016, 1102
AlwI GGATC 3 cut(s) 355, 368, 1031
AoxI GGCC 2 cut(s) 198, 828
ApeKI GCWGC 8 cut(s) 47, 380, 383, 599, 797, 970, 1004, 1230
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 1049
AsuHPI GGTGA 3 cut(s) 322, 722, 1081
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 2 cut(s) 809, 989
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 8 cut(s) 59, 367, 370, 611, 784, 982, 991, 1217
BccI CCATC 1 cut(s) 1166
BciT130I CCWGG 2 cut(s) 975, 1155
BciVI GTATCC 1 cut(s) 788
BclI TGATCA 2 cut(s) 913, 919
BcoDI GTCTC 3 cut(s) 622, 1016, 1102
BfaI CTAG 3 cut(s) 234, 605, 1234
BfoI RGCGCY 1 cut(s) 1050
BfuI GTATCC 1 cut(s) 788
BglII AGATCT 1 cut(s) 732
BisI GCNGC 8 cut(s) 48, 381, 384, 600, 798, 971, 1005, 1231
BlsI GCNGC 8 cut(s) 49, 382, 385, 601, 799, 972, 1006, 1232
Bme1390I CCNGG 2 cut(s) 975, 1155
BmiI GGNNCC 2 cut(s) 362, 1048
BmrFI CCNGG 2 cut(s) 975, 1155
BmsI GCATC 4 cut(s) 34, 342, 865, 916
BpiI GAAGAC 2 cut(s) 809, 989
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 2 cut(s) 239, 1047
BsaJI CCNNGG 1 cut(s) 1050
BsaXI ACNNNNNCTCC 2 cut(s) 1097, 1127
Bse1I ACTGG 3 cut(s) 63, 286, 337
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 2 cut(s) 975, 1155
BseDI CCNNGG 1 cut(s) 1050
BseGI GGATG 5 cut(s) 12, 333, 433, 1000, 1177
BseJI GATNNNNATC 1 cut(s) 918
BseMII CTCAG 5 cut(s) 87, 382, 525, 767, 918
BseNI ACTGG 3 cut(s) 63, 286, 337
BseRI GAGGAG 2 cut(s) 338, 551
BseXI GCAGC 8 cut(s) 59, 367, 370, 611, 784, 982, 991, 1217
BsgI GTGCAG 1 cut(s) 989
BshFI GGCC 2 cut(s) 200, 830
BshNI GGYRCC 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 622, 1016, 1102
BsnI GGCC 2 cut(s) 200, 830
Bsp1286I GDGCHC 2 cut(s) 231, 582
Bsp143I GATC 5 cut(s) 360, 732, 913, 919, 1036
BspACI CCGC 4 cut(s) 50, 194, 467, 1133
BspANI GGCC 2 cut(s) 200, 830
BspCNI CTCAG 5 cut(s) 88, 381, 526, 766, 919
BspHI TCATGA 2 cut(s) 684, 916
BspLI GGNNCC 2 cut(s) 362, 1048
BspPI GGATC 3 cut(s) 355, 368, 1031
BspT107I GGYRCC 1 cut(s) 1046
BsrI ACTGG 3 cut(s) 63, 286, 337
BssECI CCNNGG 1 cut(s) 1050
BssMI GATC 5 cut(s) 360, 732, 913, 919, 1036
BssNAI GTATAC 1 cut(s) 664
BssNI GRCGYC 2 cut(s) 239, 1047
BssT1I CCWWGG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 664
Bst2UI CCWGG 2 cut(s) 975, 1155
Bst4CI ACNGT 4 cut(s) 668, 716, 1093, 1113
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 2 cut(s) 239, 1047
BstAPI GCANNNNNTGC 2 cut(s) 380, 586
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 5 cut(s) 96, 368, 534, 753, 927
BstF5I GGATG 5 cut(s) 12, 333, 433, 1000, 1177
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 1 cut(s) 1049
BstKTI GATC 5 cut(s) 363, 735, 916, 922, 1039
BstMAI GTCTC 3 cut(s) 622, 1016, 1102
BstMBI GATC 5 cut(s) 360, 732, 913, 919, 1036
BstMWI GCNNNNNNNGC 8 cut(s) 47, 295, 304, 380, 473, 586, 803, 962
BstNI CCWGG 2 cut(s) 975, 1155
BstSCI CCNGG 2 cut(s) 973, 1153
BstV1I GCAGC 8 cut(s) 59, 367, 370, 611, 784, 982, 991, 1217
BstV2I GAAGAC 2 cut(s) 809, 989
BstX2I RGATCY 2 cut(s) 360, 732
BstYI RGATCY 2 cut(s) 360, 732
BstZ17I GTATAC 1 cut(s) 664
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 2 cut(s) 200, 830
BtsCI GGATG 5 cut(s) 12, 333, 433, 1000, 1177
BtsIMutI CAGTG 4 cut(s) 344, 376, 721, 1071
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 2 cut(s) 684, 916
CfoI GCGC 1 cut(s) 1049
Csp6I GTAC 3 cut(s) 22, 145, 854
CviAII CATG 5 cut(s) 80, 173, 685, 885, 917
CviQI GTAC 3 cut(s) 22, 145, 854
DdeI CTNAG 5 cut(s) 96, 368, 534, 753, 927
DinI GGCGCC 1 cut(s) 1048
DpnI GATC 5 cut(s) 362, 734, 915, 921, 1038
DpnII GATC 5 cut(s) 360, 732, 913, 919, 1036
DraIII CACNNNGTG 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 1 cut(s) 1148
Eco130I CCWWGG 1 cut(s) 1050
Eco24I GRGCYC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 973, 1153
EcoT14I CCWWGG 1 cut(s) 1050
EcoT38I GRGCYC 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 1048
EheI GGCGCC 1 cut(s) 1048
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 5 cut(s) 83, 176, 688, 888, 920
FalI AAGNNNNNCTT 6 cut(s) 719, 751, 804, 836, 894, 926
FatI CATG 5 cut(s) 79, 172, 684, 884, 916
FauNDI CATATG 1 cut(s) 376
FbaI TGATCA 2 cut(s) 913, 919
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 8 cut(s) 48, 381, 384, 600, 798, 971, 1005, 1231
FokI GGATG 5 cut(s) 19, 320, 420, 1007, 1184
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 8 cut(s) 48, 381, 384, 600, 798, 971, 1005, 1231
FspBI CTAG 3 cut(s) 234, 605, 1234
GlaI GCGC 1 cut(s) 1048
GluI GCNGC 8 cut(s) 48, 381, 384, 600, 798, 971, 1005, 1231
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 200, 830
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 1049
Hin1I GRCGYC 2 cut(s) 239, 1047
Hin1II CATG 5 cut(s) 83, 176, 688, 888, 920
Hin6I GCGC 1 cut(s) 1047
HinP1I GCGC 1 cut(s) 1047
HincII GTYRAC 1 cut(s) 945
HindII GTYRAC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 6 cut(s) 412, 428, 681, 749, 1136, 1222
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 322, 722, 1081
Hpy166II GTNNAC 3 cut(s) 145, 664, 945
Hpy188I TCNGA 6 cut(s) 279, 391, 535, 556, 654, 1210
Hpy188III TCNNGA 7 cut(s) 437, 685, 700, 821, 911, 917, 1040
Hpy8I GTNNAC 3 cut(s) 145, 664, 945
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 4 cut(s) 322, 853, 925, 1160
HpyCH4III ACNGT 4 cut(s) 668, 716, 1093, 1113
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 295, 304, 380, 473, 586, 803, 962
HpyF3I CTNAG 5 cut(s) 96, 368, 534, 753, 927
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 2 cut(s) 239, 1047
Hsp92II CATG 5 cut(s) 83, 176, 688, 888, 920
HspAI GCGC 1 cut(s) 1047
KasI GGCGCC 1 cut(s) 1046
Ksp22I TGATCA 2 cut(s) 913, 919
Kzo9I GATC 5 cut(s) 360, 732, 913, 919, 1036
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 8 cut(s) 59, 367, 370, 611, 784, 982, 991, 1217
LweI GCATC 4 cut(s) 34, 342, 865, 916
MaeI CTAG 3 cut(s) 234, 605, 1234
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 341, 710, 1147
MalI GATC 5 cut(s) 362, 734, 915, 921, 1038
MboI GATC 5 cut(s) 360, 732, 913, 919, 1036
MboII GAAGA 9 cut(s) 223, 421, 622, 715, 742, 752, 809, 994, 1202
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 2 cut(s) 360, 732
MhlI GDGCHC 2 cut(s) 231, 582
MluCI AATT 4 cut(s) 125, 256, 265, 347
Mly113I GGCGCC 1 cut(s) 1047
MlyI GAGTC 1 cut(s) 1231
MmeI TCCRAC 1 cut(s) 959
MnlI CCTC 9 cut(s) 190, 316, 391, 496, 529, 558, 703, 1036, 1210
MseI TTAA 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 975, 1155
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 2 cut(s) 975, 1155
MwoI GCNNNNNNNGC 8 cut(s) 47, 295, 304, 380, 473, 586, 803, 962
NarI GGCGCC 1 cut(s) 1047
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 360, 732, 913, 919, 1036
NlaIII CATG 5 cut(s) 83, 176, 688, 888, 920
NlaIV GGNNCC 2 cut(s) 362, 1048
NmuCI GTSAC 1 cut(s) 710
PagI TCATGA 2 cut(s) 684, 916
PfeI GAWTC 5 cut(s) 412, 428, 681, 749, 1136
PkrI GCNGC 8 cut(s) 49, 382, 385, 601, 799, 972, 1006, 1232
PleI GAGTC 1 cut(s) 1230
PluTI GGCGCC 1 cut(s) 1050
PpsI GAGTC 1 cut(s) 1230
Psp6I CCWGG 2 cut(s) 973, 1153
PspGI CCWGG 2 cut(s) 973, 1153
PspN4I GGNNCC 2 cut(s) 362, 1048
PsuI RGATCY 2 cut(s) 360, 732
RsaI GTAC 3 cut(s) 23, 146, 855
RsaNI GTAC 3 cut(s) 22, 145, 854
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 8 cut(s) 48, 381, 384, 600, 798, 971, 1005, 1231
Sau3AI GATC 5 cut(s) 360, 732, 913, 919, 1036
SchI GAGTC 1 cut(s) 1231
ScrFI CCNGG 2 cut(s) 975, 1155
SduI GDGCHC 2 cut(s) 231, 582
SfaNI GCATC 4 cut(s) 34, 342, 865, 916
SfoI GGCGCC 1 cut(s) 1048
Sse9I AATT 4 cut(s) 125, 256, 265, 347
SsiI CCGC 4 cut(s) 50, 194, 467, 1133
SspDI GGCGCC 1 cut(s) 1046
SspMI CTAG 3 cut(s) 234, 605, 1234
StyD4I CCNGG 2 cut(s) 973, 1153
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 4 cut(s) 668, 716, 1093, 1113
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 55, 1177
TasI AATT 4 cut(s) 125, 256, 265, 347
TatI WGTACW 2 cut(s) 144, 853
TfiI GAWTC 5 cut(s) 412, 428, 681, 749, 1136
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 4 cut(s) 344, 376, 721, 1078
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 8 cut(s) 47, 380, 383, 599, 797, 970, 1004, 1230
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 4 cut(s) 68, 330, 671, 1203
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 4 cut(s) 344, 376, 721, 1078
XapI RAATTY 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 3 cut(s) 234, 605, 1234
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.