Rroxscaffold_6G00403620

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000378
Physical Location & Seq
Forward (+)
26110297 .. 26112930
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00403620.1

Sequence Viewer

Length: 1509 bp
ATGAAGTACTCTCATTTCAGCTCCCTATTCAACACTCTCCGAAACGCACCACGTCACGTTTCGCTGTACTCAACGGCGGCACCCAAATCTCATCGGAAGTTCTGGAAAGGCTCGCTGAACGGCCTCTACCGTCAGATCTCCCGGAGCGATCCTAAGGCCTCCGTATTACCGATTCTCGACCGGTGGGTCCAAAACAGCCGAACCGTAGATAAAGATGACCTCGTCACTATCATCAAGGAGCTCAGGTACTACAAAGGCTACAGCCAAGCTCTTGAGGTGTCCATGTGGATGAGTGACAAAAGGTATGTTGAACTTTTGCCCTCTGACATAGCCATCCGGCTCGACTTGATTGCAAAAGTTCATGGAATAGAGCAAGCTGAGAATTATTTTAACAACACTCCCCAACAATTGAAAGTCCTTGAGGTTTACAGTGCTCTCCTCAACTGCTATGCCCATGCAAAACAGTTGGAAAAAGCAGAGGCAACCATGCAGAAGATGAGGGATTTGAGGTTCTCTAGGACGTCATTGTCATACAATGTTTTACTCAATTTGTATTATAAGACTGGACACCGTGCAAAATTTGACAGTCTGATGAGTGAAATGGAAGAGAATGGCATCGGTTTTGACAGATTCACATATGGGATCAGACTCAGTGCAGCTGCTGCTGCTTCTGATCTCGAGGGAATTGACAAGATTCTGGCAGAATGGGAATCTGATCCTAAGAGTCTTTTGGACTGGACTAATTATGCCGTTGCAGCAAACGGTTATACAAAAGCAGGAGCTGTGGACAAGGCTTTAGCAATGCTAAAGAGATCTGAGGAACAGATACCAAGTTCTAAAAGACAGAGGGGAGCATATCAGTACCTTATGACACAATATGCAGTACTAGGGAAGAAAGATGATACTTTGAGACTATGGAAATGTTACAAGGAGCAGATGAAAGTATACAATAGGGGTTATATATGCATAATGACCTCACTCTCGAAGTTGGATGACATTGAGAATGCTGAGAAGATCTTTGAAGAGTGGGAATCTGAGCATGCAAATTATGATATTCGTATCCCAAATACCTTGATTGGTGCTTATACCAGGAATGGTTTTCTTGACAAGGCTGAAGCCATTATGAGCAGGATAAGATTGAAGGATGAGAAACCTAATCCTACGGGATGGAATTATTTGGCGAAAGGGTATCTTGATCATGGTCAAATTGAGAAGGTACTTGAATCGGCAACAAAAGCAGTTTCTGCTGCGCAGCCAGGGTGGATGCCAGACAAGGAGGTTGTGGTCGCATGTCTGGAATACTTCAAAAGGAAAGCAGATCTGGAAGGAGCCGAGGAATTTATAAAACTCCTCGGGGGTAAGAATATTATTCCTGCAAATATGCAGGAGAGATTGTTGAATCATATCAAAAATGGGAATTCTACTGTTGTAGTAGGTGAAATGGAATGGGATTGTCCAAATGGGGACGAAGAAACAAGTGAACTTACAGATGTGGAATCAGGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

502

Amino Acids

57.36

Weight (kDa)

7.12

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 175 - 218 2.8e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000378)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20710 AT2G20710 AT2G20720
fragaria_vesca FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 558, 1343
AasI GACNNNNNNGTC 2 cut(s) 185, 526
AatII GACGTC 1 cut(s) 524
Acc16I TGCGCA 1 cut(s) 1251
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 945
AciI CCGC 1 cut(s) 77
AclWI GGATC 3 cut(s) 143, 650, 710
AcsI RAATTY 3 cut(s) 578, 1337, 1417
AcuI CTGAAG 1 cut(s) 1134
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 6 cut(s) 8, 68, 248, 863, 885, 1218
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 8 cut(s) 31, 311, 412, 1022, 1141, 1223, 1306, 1399
AjiI CACGTC 1 cut(s) 53
AjnI CCWGG 2 cut(s) 1088, 1255
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 6 cut(s) 21, 241, 269, 377, 659, 782
AluI AGCT 6 cut(s) 21, 241, 269, 377, 659, 782
Alw21I GWGCWC 2 cut(s) 243, 436
Alw26I GTCTC 1 cut(s) 904
AlwI GGATC 3 cut(s) 143, 650, 710
AlwNI CAGNNNCTG 3 cut(s) 662, 782, 1244
Ama87I CYCGRG 2 cut(s) 677, 1352
AoxI GGCC 2 cut(s) 121, 156
ApeKI GCWGC 7 cut(s) 656, 659, 662, 665, 755, 1247, 1252
ApoI RAATTY 3 cut(s) 578, 1337, 1417
AsiGI ACCGGT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 1252
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 1448
AvaI CYCGRG 2 cut(s) 677, 1352
AvaII GGWCC 1 cut(s) 187
AxyI CCTNAGG 1 cut(s) 153
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 243, 436
BbvI GCAGC 7 cut(s) 646, 649, 652, 668, 767, 1234, 1264
BccI CCATC 2 cut(s) 341, 1161
BceAI ACGGC 3 cut(s) 90, 136, 734
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 2 cut(s) 1090, 1257
BciVI GTATCC 1 cut(s) 1070
BclI TGATCA 1 cut(s) 1195
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 2 cut(s) 516, 887
BfmI CTRYAG 1 cut(s) 259
BfuI GTATCC 1 cut(s) 1070
BglII AGATCT 4 cut(s) 135, 812, 1014, 1318
BisI GCNGC 8 cut(s) 78, 657, 660, 663, 666, 756, 1248, 1253
BlsI GCNGC 8 cut(s) 79, 658, 661, 664, 667, 757, 1249, 1254
BmcAI AGTACT 2 cut(s) 8, 885
Bme1390I CCNGG 3 cut(s) 142, 1090, 1257
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 677, 1352
BmgBI CACGTC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 81, 188, 1330
BmrFI CCNGG 3 cut(s) 142, 1090, 1257
BmsI GCATC 2 cut(s) 624, 1254
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 293, 440
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 1256, 1332, 1351
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 1379, 1409
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 568, 740
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 807
BseBI CCWGG 2 cut(s) 1090, 1257
BseDI CCNNGG 3 cut(s) 1256, 1332, 1351
BseGI GGATG 6 cut(s) 294, 333, 997, 1150, 1172, 1269
BseMI GCAATG 1 cut(s) 807
BseMII CTCAG 6 cut(s) 256, 369, 664, 807, 999, 1026
BseNI ACTGG 2 cut(s) 568, 740
BseRI GAGGAG 2 cut(s) 428, 1340
BseXI GCAGC 7 cut(s) 646, 649, 652, 668, 767, 1234, 1264
BsgI GTGCAG 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 123, 158
BshNI GGYRCC 1 cut(s) 79
BshTI ACCGGT 1 cut(s) 180
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 2 cut(s) 243, 436
BsiHKCI CYCGRG 2 cut(s) 677, 1352
BsiSI CCGG 3 cut(s) 142, 181, 337
BslFI GGGAC 1 cut(s) 1478
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 1 cut(s) 1478
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 2 cut(s) 123, 158
BsoBI CYCGRG 2 cut(s) 677, 1352
Bsp1286I GDGCHC 2 cut(s) 243, 436
Bsp143I GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 123, 158
BspCNI CTCAG 6 cut(s) 255, 370, 663, 808, 1000, 1027
BspLI GGNNCC 3 cut(s) 81, 188, 1330
BspPI GGATC 3 cut(s) 143, 650, 710
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 807
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 2 cut(s) 568, 740
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 3 cut(s) 1256, 1332, 1351
BssMI GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
BssNAI GTATAC 1 cut(s) 946
BssNI GRCGYC 1 cut(s) 521
Bst1107I GTATAC 1 cut(s) 946
Bst2UI CCWGG 2 cut(s) 1090, 1257
Bst4CI ACNGT 8 cut(s) 131, 205, 431, 465, 572, 587, 764, 1426
Bst6I CTCTTC 2 cut(s) 600, 1017
BstACI GRCGYC 1 cut(s) 521
BstAPI GCANNNNNTGC 2 cut(s) 662, 1244
BstC8I GCNNGC 3 cut(s) 113, 375, 1041
BstDEI CTNAG 8 cut(s) 153, 242, 378, 650, 720, 816, 1008, 1035
BstF5I GGATG 6 cut(s) 294, 333, 997, 1150, 1172, 1269
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 9 cut(s) 138, 151, 645, 676, 718, 815, 1017, 1198, 1321
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 5 cut(s) 662, 665, 755, 1235, 1244
BstNI CCWGG 2 cut(s) 1090, 1257
BstNSI RCATGY 2 cut(s) 1043, 1293
BstSCI CCNGG 3 cut(s) 140, 1088, 1255
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 7 cut(s) 646, 649, 652, 668, 767, 1234, 1264
BstX2I RGATCY 4 cut(s) 135, 812, 1014, 1318
BstYI RGATCY 4 cut(s) 135, 812, 1014, 1318
BstZ17I GTATAC 1 cut(s) 946
Bsu36I CCTNAGG 1 cut(s) 153
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 2 cut(s) 123, 158
BtrI CACGTC 1 cut(s) 53
BtsCI GGATG 6 cut(s) 294, 333, 997, 1150, 1172, 1269
BtsIMutI CAGTG 2 cut(s) 436, 658
Cac8I GCNNGC 3 cut(s) 113, 375, 1041
CaiI CAGNNNCTG 3 cut(s) 662, 782, 1244
CfoI GCGC 1 cut(s) 1252
Cfr10I RCCGGY 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 6 cut(s) 7, 67, 247, 862, 884, 1217
CspAI ACCGGT 1 cut(s) 180
CviAII CATG 7 cut(s) 283, 362, 455, 487, 1040, 1199, 1290
CviQI GTAC 6 cut(s) 7, 67, 247, 862, 884, 1217
DdeI CTNAG 8 cut(s) 153, 242, 378, 650, 720, 816, 1008, 1035
DpnI GATC 9 cut(s) 137, 150, 644, 675, 717, 814, 1016, 1197, 1320
DpnII GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
DrdI GACNNNNNNGTC 2 cut(s) 185, 526
DseDI GACNNNNNNGTC 2 cut(s) 185, 526
Eam1104I CTCTTC 2 cut(s) 600, 1017
EarI CTCTTC 2 cut(s) 600, 1017
Ecl136II GAGCTC 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1134
Eco81I CCTNAGG 1 cut(s) 153
Eco88I CYCGRG 2 cut(s) 677, 1352
EcoICRI GAGCTC 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 1417
EcoRII CCWGG 2 cut(s) 1088, 1255
EcoT22I ATGCAT 1 cut(s) 968
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 7 cut(s) 286, 365, 458, 490, 1043, 1202, 1293
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 1 cut(s) 1478
FatI CATG 7 cut(s) 282, 361, 454, 486, 1039, 1198, 1289
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 8 cut(s) 78, 657, 660, 663, 666, 756, 1248, 1253
FokI GGATG 6 cut(s) 301, 320, 1004, 1157, 1179, 1276
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 8 cut(s) 78, 657, 660, 663, 666, 756, 1248, 1253
FspBI CTAG 2 cut(s) 516, 887
FspI TGCGCA 1 cut(s) 1251
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 8 cut(s) 78, 657, 660, 663, 666, 756, 1248, 1253
HaeIII GGCC 2 cut(s) 123, 158
HapII CCGG 3 cut(s) 142, 181, 337
HhaI GCGC 1 cut(s) 1252
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 7 cut(s) 286, 365, 458, 490, 1043, 1202, 1293
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HpaII CCGG 3 cut(s) 142, 181, 337
HphI GGTGA 1 cut(s) 1448
Hpy166II GTNNAC 4 cut(s) 427, 787, 946, 1481
Hpy188III TCNNGA 9 cut(s) 103, 176, 272, 677, 982, 1103, 1193, 1295, 1322
Hpy8I GTNNAC 4 cut(s) 427, 787, 946, 1481
HpyAV CCTTC 3 cut(s) 1135, 1207, 1319
HpyCH4III ACNGT 8 cut(s) 131, 205, 431, 465, 572, 587, 764, 1426
HpyCH4IV ACGT 3 cut(s) 52, 57, 521
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 665, 755, 1235, 1244
HpyF3I CTNAG 8 cut(s) 153, 242, 378, 650, 720, 816, 1008, 1035
HpySE526I ACGT 3 cut(s) 52, 57, 521
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 7 cut(s) 286, 365, 458, 490, 1043, 1202, 1293
HspAI GCGC 1 cut(s) 1250
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
LmnI GCTCC 7 cut(s) 26, 144, 238, 779, 851, 931, 1328
Lsp1109I GCAGC 7 cut(s) 646, 649, 652, 668, 767, 1234, 1264
LweI GCATC 2 cut(s) 624, 1254
MaeI CTAG 2 cut(s) 516, 887
MaeII ACGT 3 cut(s) 52, 57, 521
MaeIII GTNAC 4 cut(s) 53, 223, 293, 923
MalI GATC 9 cut(s) 137, 150, 644, 675, 717, 814, 1016, 1197, 1320
MboI GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
MboII GAAGA 6 cut(s) 505, 617, 904, 1024, 1034, 1481
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 4 cut(s) 135, 812, 1014, 1318
MhlI GDGCHC 2 cut(s) 243, 436
MlyI GAGTC 2 cut(s) 642, 733
MmeI TCCRAC 2 cut(s) 447, 969
Mph1103I ATGCAT 1 cut(s) 968
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 3 cut(s) 142, 181, 337
MspR9I CCNGG 3 cut(s) 142, 1090, 1257
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 2 cut(s) 1090, 1257
MwoI GCNNNNNNNGC 5 cut(s) 662, 665, 755, 1235, 1244
NciI CCSGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 637
NdeII GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
NlaIII CATG 7 cut(s) 286, 365, 458, 490, 1043, 1202, 1293
NlaIV GGNNCC 3 cut(s) 81, 188, 1330
NmeAIII GCCGAG 1 cut(s) 1357
NmuCI GTSAC 3 cut(s) 53, 223, 293
NsbI TGCGCA 1 cut(s) 1251
NsiI ATGCAT 1 cut(s) 968
NspI RCATGY 2 cut(s) 1043, 1293
PaeI GCATGC 1 cut(s) 1043
PaeR7I CTCGAG 1 cut(s) 677
PceI AGGCCT 1 cut(s) 158
PctI GAATGC 1 cut(s) 1009
PfeI GAWTC 8 cut(s) 172, 630, 694, 710, 1031, 1223, 1399, 1496
PflFI GACNNNGTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 8 cut(s) 79, 658, 661, 664, 667, 757, 1249, 1254
PleI GAGTC 2 cut(s) 642, 732
PpsI GAGTC 2 cut(s) 642, 732
PsiI TTATAA 2 cut(s) 558, 1343
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 1088, 1255
PspGI CCWGG 2 cut(s) 1088, 1255
PspN4I GGNNCC 3 cut(s) 81, 188, 1330
PspPI GGNCC 1 cut(s) 187
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PstNI CAGNNNCTG 3 cut(s) 662, 782, 1244
PsuI RGATCY 4 cut(s) 135, 812, 1014, 1318
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 6 cut(s) 8, 68, 248, 863, 885, 1218
RsaNI GTAC 6 cut(s) 7, 67, 247, 862, 884, 1217
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 8 cut(s) 78, 657, 660, 663, 666, 756, 1248, 1253
Sau3AI GATC 9 cut(s) 135, 148, 642, 673, 715, 812, 1014, 1195, 1318
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 2 cut(s) 8, 885
SchI GAGTC 2 cut(s) 642, 733
ScrFI CCNGG 3 cut(s) 142, 1090, 1257
SduI GDGCHC 2 cut(s) 243, 436
SfaNI GCATC 2 cut(s) 624, 1254
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 3 cut(s) 272, 419, 677
SmoI CTYRAG 3 cut(s) 272, 419, 677
SphI GCATGC 1 cut(s) 1043
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 1366
SspMI CTAG 2 cut(s) 516, 887
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 140, 1088, 1255
TaaI ACNGT 8 cut(s) 131, 205, 431, 465, 572, 587, 764, 1426
TaiI ACGT 3 cut(s) 55, 60, 524
TaqI TCGA 4 cut(s) 177, 342, 678, 983
TatI WGTACW 3 cut(s) 6, 66, 883
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 8 cut(s) 172, 630, 694, 710, 1031, 1223, 1399, 1496
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 436, 658
TseFI GTSAC 3 cut(s) 53, 223, 293
TseI GCWGC 7 cut(s) 656, 659, 662, 665, 755, 1247, 1252
Tsp45I GTSAC 3 cut(s) 53, 223, 293
TspDTI ATGAA 3 cut(s) 17, 350, 953
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 436, 658
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 3 cut(s) 578, 1337, 1417
XceI RCATGY 2 cut(s) 1043, 1293
XhoI CTCGAG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 945
XspI CTAG 2 cut(s) 516, 887
ZraI GACGTC 1 cut(s) 522
ZrmI AGTACT 2 cut(s) 8, 885
Zsp2I ATGCAT 1 cut(s) 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.