repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 177 - 219 | 5.8e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 872 |
| AccII | CGCG | 3 cut(s) | 134, 594, 643 |
| AccIII | TCCGGA | 2 cut(s) | 140, 555 |
| AciI | CCGC | 3 cut(s) | 643, 1193, 1211 |
| AclWI | GGATC | 4 cut(s) | 132, 140, 1048, 1061 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfaI | GTAC | 5 cut(s) | 902, 920, 1184, 1385, 1464 |
| AgsI | TTSAA | 2 cut(s) | 439, 979 |
| AjnI | CCWGG | 3 cut(s) | 714, 1249, 1266 |
| Alw21I | GWGCWC | 3 cut(s) | 219, 433, 973 |
| Alw26I | GTCTC | 5 cut(s) | 602, 911, 1252, 1305, 1333 |
| Alw44I | GTGCAC | 1 cut(s) | 969 |
| AlwI | GGATC | 4 cut(s) | 132, 140, 1048, 1061 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1381 |
| Aor13HI | TCCGGA | 2 cut(s) | 140, 555 |
| ApaLI | GTGCAC | 1 cut(s) | 969 |
| ApeKI | GCWGC | 5 cut(s) | 121, 586, 589, 802, 878 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 383, 393 |
| AspLEI | GCGC | 2 cut(s) | 594, 738 |
| AspS9I | GGNCC | 2 cut(s) | 103, 1129 |
| AsuHPI | GGTGA | 2 cut(s) | 835, 1252 |
| AsuII | TTCGAA | 2 cut(s) | 241, 387 |
| AvaII | GGWCC | 2 cut(s) | 103, 1129 |
| BaeGI | GKGCMC | 1 cut(s) | 973 |
| BamHI | GGATCC | 1 cut(s) | 1053 |
| BanII | GRGCYC | 1 cut(s) | 219 |
| BbsI | GAAGAC | 1 cut(s) | 515 |
| Bbv12I | GWGCWC | 3 cut(s) | 219, 433, 973 |
| BbvI | GCAGC | 5 cut(s) | 133, 573, 576, 789, 865 |
| BccI | CCATC | 9 cut(s) | 100, 170, 174, 426, 676, 814, 976, 1090, 1183 |
| BceAI | ACGGC | 2 cut(s) | 82, 237 |
| BciT130I | CCWGG | 3 cut(s) | 716, 1251, 1268 |
| BciVI | GTATCC | 2 cut(s) | 944, 1144 |
| BclI | TGATCA | 2 cut(s) | 187, 963 |
| BcoDI | GTCTC | 5 cut(s) | 602, 911, 1252, 1305, 1333 |
| BfaI | CTAG | 2 cut(s) | 794, 1471 |
| BfmI | CTRYAG | 2 cut(s) | 119, 879 |
| BfuAI | ACCTGC | 1 cut(s) | 872 |
| BfuI | GTATCC | 2 cut(s) | 944, 1144 |
| BglII | AGATCT | 1 cut(s) | 309 |
| BisI | GCNGC | 5 cut(s) | 122, 587, 590, 803, 879 |
| BlpI | GCTNAGC | 1 cut(s) | 474 |
| BlsI | GCNGC | 5 cut(s) | 123, 588, 591, 804, 880 |
| Bme1390I | CCNGG | 3 cut(s) | 716, 1251, 1268 |
| Bme18I | GGWCC | 2 cut(s) | 103, 1129 |
| BmgT120I | GGNCC | 2 cut(s) | 103, 1129 |
| BmiI | GGNNCC | 2 cut(s) | 105, 1055 |
| BmrFI | CCNGG | 3 cut(s) | 716, 1251, 1268 |
| BmrI | ACTGGG | 1 cut(s) | 570 |
| BmsI | GCATC | 6 cut(s) | 16, 225, 234, 528, 789, 1414 |
| BmuI | ACTGGG | 1 cut(s) | 570 |
| BpiI | GAAGAC | 1 cut(s) | 515 |
| BpmI | CTGGAG | 3 cut(s) | 254, 931, 1319 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 474 |
| Bpu14I | TTCGAA | 2 cut(s) | 241, 387 |
| BsaI | GGTCTC | 1 cut(s) | 1252 |
| BsaJI | CCNNGG | 2 cut(s) | 715, 1250 |
| BsaWI | WCCGGW | 2 cut(s) | 140, 555 |
| Bse1I | ACTGG | 3 cut(s) | 565, 737, 952 |
| Bse3DI | GCAATG | 1 cut(s) | 1434 |
| BseAI | TCCGGA | 2 cut(s) | 140, 555 |
| BseBI | CCWGG | 3 cut(s) | 716, 1251, 1268 |
| BseDI | CCNNGG | 2 cut(s) | 715, 1250 |
| BseGI | GGATG | 6 cut(s) | 181, 185, 291, 610, 687, 991 |
| BseMI | GCAATG | 1 cut(s) | 1434 |
| BseMII | CTCAG | 4 cut(s) | 67, 465, 845, 1397 |
| BseNI | ACTGG | 3 cut(s) | 565, 737, 952 |
| BseRI | GAGGAG | 2 cut(s) | 421, 1010 |
| BseSI | GKGCMC | 1 cut(s) | 973 |
| BseXI | GCAGC | 5 cut(s) | 133, 573, 576, 789, 865 |
| Bsh1236I | CGCG | 3 cut(s) | 134, 594, 643 |
| BsiHKAI | GWGCWC | 3 cut(s) | 219, 433, 973 |
| BsiSI | CCGG | 3 cut(s) | 78, 141, 556 |
| BsmAI | GTCTC | 5 cut(s) | 602, 911, 1252, 1305, 1333 |
| BsmBI | CGTCTC | 1 cut(s) | 911 |
| BsmI | GAATGC | 1 cut(s) | 832 |
| Bso31I | GGTCTC | 1 cut(s) | 1252 |
| Bsp119I | TTCGAA | 2 cut(s) | 241, 387 |
| Bsp1286I | GDGCHC | 3 cut(s) | 219, 433, 973 |
| Bsp13I | TCCGGA | 2 cut(s) | 140, 555 |
| Bsp1407I | TGTACA | 1 cut(s) | 918 |
| Bsp143I | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 474 |
| Bsp68I | TCGCGA | 1 cut(s) | 134 |
| BspACI | CCGC | 3 cut(s) | 643, 1193, 1211 |
| BspCNI | CTCAG | 4 cut(s) | 66, 466, 844, 1398 |
| BspEI | TCCGGA | 2 cut(s) | 140, 555 |
| BspFNI | CGCG | 3 cut(s) | 134, 594, 643 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 2 cut(s) | 105, 1055 |
| BspMAI | CTGCAG | 2 cut(s) | 123, 883 |
| BspMI | ACCTGC | 1 cut(s) | 872 |
| BspPI | GGATC | 4 cut(s) | 132, 140, 1048, 1061 |
| BspT104I | TTCGAA | 2 cut(s) | 241, 387 |
| BspTNI | GGTCTC | 1 cut(s) | 1252 |
| BsrDI | GCAATG | 1 cut(s) | 1434 |
| BsrGI | TGTACA | 1 cut(s) | 918 |
| BsrI | ACTGG | 3 cut(s) | 565, 737, 952 |
| BssECI | CCNNGG | 2 cut(s) | 715, 1250 |
| BssMI | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| Bst2UI | CCWGG | 3 cut(s) | 716, 1251, 1268 |
| Bst4CI | ACNGT | 7 cut(s) | 428, 613, 634, 905, 1344, 1383, 1397 |
| Bst6I | CTCTTC | 3 cut(s) | 888, 1011, 1220 |
| BstAUI | TGTACA | 1 cut(s) | 918 |
| BstBI | TTCGAA | 2 cut(s) | 241, 387 |
| BstC8I | GCNNGC | 5 cut(s) | 451, 651, 846, 1247, 1352 |
| BstDEI | CTNAG | 4 cut(s) | 53, 474, 831, 1406 |
| BstF5I | GGATG | 6 cut(s) | 181, 185, 291, 610, 687, 991 |
| BstFNI | CGCG | 3 cut(s) | 134, 594, 643 |
| BstHHI | GCGC | 2 cut(s) | 594, 738 |
| BstKTI | GATC | 7 cut(s) | 140, 148, 190, 312, 966, 1056, 1375 |
| BstMAI | GTCTC | 5 cut(s) | 602, 911, 1252, 1305, 1333 |
| BstMBI | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 450, 752 |
| BstNI | CCWGG | 3 cut(s) | 716, 1251, 1268 |
| BstNSI | RCATGY | 2 cut(s) | 653, 848 |
| BstSCI | CCNGG | 3 cut(s) | 714, 1249, 1266 |
| BstSFI | CTRYAG | 2 cut(s) | 119, 879 |
| BstSLI | GKGCMC | 1 cut(s) | 973 |
| BstUI | CGCG | 3 cut(s) | 134, 594, 643 |
| BstV1I | GCAGC | 5 cut(s) | 133, 573, 576, 789, 865 |
| BstV2I | GAAGAC | 1 cut(s) | 515 |
| BstX2I | RGATCY | 4 cut(s) | 137, 145, 309, 1053 |
| BstYI | RGATCY | 4 cut(s) | 137, 145, 309, 1053 |
| BsuI | GTATCC | 2 cut(s) | 944, 1144 |
| BtgZI | GCGATG | 1 cut(s) | 78 |
| BtsCI | GGATG | 6 cut(s) | 181, 185, 291, 610, 687, 991 |
| BtsIMutI | CAGTG | 3 cut(s) | 639, 945, 973 |
| BtuMI | TCGCGA | 1 cut(s) | 134 |
| BveI | ACCTGC | 1 cut(s) | 872 |
| Cac8I | GCNNGC | 5 cut(s) | 451, 651, 846, 1247, 1352 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1381 |
| CciI | TCATGA | 1 cut(s) | 304 |
| CfoI | GCGC | 2 cut(s) | 594, 738 |
| Cfr13I | GGNCC | 2 cut(s) | 103, 1129 |
| CseI | GACGC | 1 cut(s) | 113 |
| CsiI | ACCWGGT | 1 cut(s) | 1266 |
| Csp6I | GTAC | 5 cut(s) | 901, 919, 1183, 1384, 1463 |
| CviAII | CATG | 7 cut(s) | 305, 650, 845, 862, 1161, 1315, 1390 |
| CviQI | GTAC | 5 cut(s) | 901, 919, 1183, 1384, 1463 |
| DdeI | CTNAG | 4 cut(s) | 53, 474, 831, 1406 |
| DpnI | GATC | 7 cut(s) | 139, 147, 189, 311, 965, 1055, 1374 |
| DpnII | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| Eam1104I | CTCTTC | 3 cut(s) | 888, 1011, 1220 |
| EarI | CTCTTC | 3 cut(s) | 888, 1011, 1220 |
| Ecl136II | GAGCTC | 1 cut(s) | 217 |
| Eco24I | GRGCYC | 1 cut(s) | 219 |
| Eco31I | GGTCTC | 1 cut(s) | 1252 |
| Eco32I | GATATC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 2 cut(s) | 103, 1129 |
| Eco53kI | GAGCTC | 1 cut(s) | 217 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| EcoICRI | GAGCTC | 1 cut(s) | 217 |
| EcoRII | CCWGG | 3 cut(s) | 714, 1249, 1266 |
| EcoRV | GATATC | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 1 cut(s) | 219 |
| Esp3I | CGTCTC | 1 cut(s) | 911 |
| FaeI | CATG | 7 cut(s) | 308, 653, 848, 865, 1164, 1318, 1393 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 507, 539 |
| FatI | CATG | 7 cut(s) | 304, 649, 844, 861, 1160, 1314, 1389 |
| FauI | CCCGC | 1 cut(s) | 1186 |
| FbaI | TGATCA | 2 cut(s) | 187, 963 |
| Fnu4HI | GCNGC | 5 cut(s) | 122, 587, 590, 803, 879 |
| FokI | GGATG | 6 cut(s) | 188, 192, 298, 617, 694, 998 |
| FriOI | GRGCYC | 1 cut(s) | 219 |
| Fsp4HI | GCNGC | 5 cut(s) | 122, 587, 590, 803, 879 |
| FspBI | CTAG | 2 cut(s) | 794, 1471 |
| GlaI | GCGC | 2 cut(s) | 593, 737 |
| GluI | GCNGC | 5 cut(s) | 122, 587, 590, 803, 879 |
| GsuI | CTGGAG | 3 cut(s) | 254, 931, 1319 |
| HapII | CCGG | 3 cut(s) | 78, 141, 556 |
| HgaI | GACGC | 1 cut(s) | 113 |
| HhaI | GCGC | 2 cut(s) | 594, 738 |
| Hin1II | CATG | 7 cut(s) | 308, 653, 848, 865, 1164, 1318, 1393 |
| Hin6I | GCGC | 2 cut(s) | 592, 736 |
| HinP1I | GCGC | 2 cut(s) | 592, 736 |
| HinfI | GANTC | 4 cut(s) | 196, 331, 544, 1467 |
| HpaII | CCGG | 3 cut(s) | 78, 141, 556 |
| HphI | GGTGA | 2 cut(s) | 835, 1252 |
| Hpy166II | GTNNAC | 3 cut(s) | 637, 901, 971 |
| Hpy188I | TCNGA | 8 cut(s) | 56, 214, 280, 316, 670, 814, 834, 1053 |
| Hpy8I | GTNNAC | 3 cut(s) | 637, 901, 971 |
| Hpy99I | CGWCG | 1 cut(s) | 129 |
| HpyAV | CCTTC | 5 cut(s) | 51, 311, 451, 1096, 1201 |
| HpyCH4III | ACNGT | 7 cut(s) | 428, 613, 634, 905, 1344, 1383, 1397 |
| HpyCH4IV | ACGT | 1 cut(s) | 1446 |
| HpyCH4V | TGCA | 7 cut(s) | 121, 466, 649, 881, 971, 1083, 1427 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 450, 752 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 474, 831, 1406 |
| HpySE526I | ACGT | 1 cut(s) | 1446 |
| Hsp92II | CATG | 7 cut(s) | 308, 653, 848, 865, 1164, 1318, 1393 |
| HspAI | GCGC | 2 cut(s) | 592, 736 |
| Kpn2I | TCCGGA | 2 cut(s) | 140, 555 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 963 |
| Kzo9I | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| LmnI | GCTCC | 7 cut(s) | 60, 214, 222, 875, 912, 925, 1165 |
| Lsp1109I | GCAGC | 5 cut(s) | 133, 573, 576, 789, 865 |
| LweI | GCATC | 6 cut(s) | 16, 225, 234, 528, 789, 1414 |
| MabI | ACCWGGT | 1 cut(s) | 1266 |
| MaeI | CTAG | 2 cut(s) | 794, 1471 |
| MaeII | ACGT | 1 cut(s) | 1446 |
| MaeIII | GTNAC | 1 cut(s) | 1076 |
| MalI | GATC | 7 cut(s) | 139, 147, 189, 311, 965, 1055, 1374 |
| MboI | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| MflI | RGATCY | 4 cut(s) | 137, 145, 309, 1053 |
| MhlI | GDGCHC | 3 cut(s) | 219, 433, 973 |
| MluCI | AATT | 2 cut(s) | 43, 1008 |
| MmeI | TCCRAC | 3 cut(s) | 81, 153, 1391 |
| MroI | TCCGGA | 2 cut(s) | 140, 555 |
| MroXI | GAANNNNTTC | 2 cut(s) | 383, 393 |
| MseI | TTAA | 5 cut(s) | 204, 513, 779, 1067, 1346 |
| MslI | CAYNNNNRTG | 3 cut(s) | 233, 849, 959 |
| MspI | CCGG | 3 cut(s) | 78, 141, 556 |
| MspR9I | CCNGG | 3 cut(s) | 716, 1251, 1268 |
| Mva1269I | GAATGC | 1 cut(s) | 832 |
| MvaI | CCWGG | 3 cut(s) | 716, 1251, 1268 |
| MvnI | CGCG | 3 cut(s) | 134, 594, 643 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 450, 752 |
| NdeII | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| NlaIII | CATG | 7 cut(s) | 308, 653, 848, 865, 1164, 1318, 1393 |
| NlaIV | GGNNCC | 2 cut(s) | 105, 1055 |
| NruI | TCGCGA | 1 cut(s) | 134 |
| NspI | RCATGY | 2 cut(s) | 653, 848 |
| NspV | TTCGAA | 2 cut(s) | 241, 387 |
| PaeI | GCATGC | 2 cut(s) | 653, 848 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PctI | GAATGC | 1 cut(s) | 832 |
| PdmI | GAANNNNTTC | 2 cut(s) | 383, 393 |
| PfeI | GAWTC | 4 cut(s) | 196, 331, 544, 1467 |
| PkrI | GCNGC | 5 cut(s) | 123, 588, 591, 804, 880 |
| Psp124BI | GAGCTC | 1 cut(s) | 219 |
| Psp6I | CCWGG | 3 cut(s) | 714, 1249, 1266 |
| PspGI | CCWGG | 3 cut(s) | 714, 1249, 1266 |
| PspN4I | GGNNCC | 2 cut(s) | 105, 1055 |
| PspPI | GGNCC | 2 cut(s) | 103, 1129 |
| PstI | CTGCAG | 2 cut(s) | 123, 883 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1381 |
| PsuI | RGATCY | 4 cut(s) | 137, 145, 309, 1053 |
| RruI | TCGCGA | 1 cut(s) | 134 |
| RsaI | GTAC | 5 cut(s) | 902, 920, 1184, 1385, 1464 |
| RsaNI | GTAC | 5 cut(s) | 901, 919, 1183, 1384, 1463 |
| RseI | CAYNNNNRTG | 3 cut(s) | 233, 849, 959 |
| SacI | GAGCTC | 1 cut(s) | 219 |
| SaqAI | TTAA | 5 cut(s) | 204, 513, 779, 1067, 1346 |
| SatI | GCNGC | 5 cut(s) | 122, 587, 590, 803, 879 |
| Sau3AI | GATC | 7 cut(s) | 137, 145, 187, 309, 963, 1053, 1372 |
| Sau96I | GGNCC | 2 cut(s) | 103, 1129 |
| ScrFI | CCNGG | 3 cut(s) | 716, 1251, 1268 |
| SduI | GDGCHC | 3 cut(s) | 219, 433, 973 |
| SexAI | ACCWGGT | 1 cut(s) | 1266 |
| SfaNI | GCATC | 6 cut(s) | 16, 225, 234, 528, 789, 1414 |
| SfcI | CTRYAG | 2 cut(s) | 119, 879 |
| SfuI | TTCGAA | 2 cut(s) | 241, 387 |
| SinI | GGWCC | 2 cut(s) | 103, 1129 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 233, 849, 959 |
| SphI | GCATGC | 2 cut(s) | 653, 848 |
| Sse9I | AATT | 2 cut(s) | 43, 1008 |
| SsiI | CCGC | 3 cut(s) | 643, 1193, 1211 |
| SspMI | CTAG | 2 cut(s) | 794, 1471 |
| SstI | GAGCTC | 1 cut(s) | 219 |
| StyD4I | CCNGG | 3 cut(s) | 714, 1249, 1266 |
| TaaI | ACNGT | 7 cut(s) | 428, 613, 634, 905, 1344, 1383, 1397 |
| TaiI | ACGT | 1 cut(s) | 1449 |
| TaqI | TCGA | 6 cut(s) | 158, 241, 387, 1044, 1422, 1441 |
| TasI | AATT | 2 cut(s) | 43, 1008 |
| TatI | WGTACW | 1 cut(s) | 918 |
| TfiI | GAWTC | 4 cut(s) | 196, 331, 544, 1467 |
| Tru1I | TTAA | 5 cut(s) | 204, 513, 779, 1067, 1346 |
| Tru9I | TTAA | 5 cut(s) | 204, 513, 779, 1067, 1346 |
| TscAI | CASTG | 3 cut(s) | 639, 952, 973 |
| TseI | GCWGC | 5 cut(s) | 121, 586, 589, 802, 878 |
| TspDTI | ATGAA | 6 cut(s) | 17, 293, 509, 713, 1356, 1406 |
| TspRI | CASTG | 3 cut(s) | 639, 952, 973 |
| VneI | GTGCAC | 1 cut(s) | 969 |
| VpaK11BI | GGWCC | 2 cut(s) | 103, 1129 |
| XbaI | TCTAGA | 1 cut(s) | 793 |
| XceI | RCATGY | 2 cut(s) | 653, 848 |
| XmnI | GAANNNNTTC | 2 cut(s) | 383, 393 |
| XspI | CTAG | 2 cut(s) | 794, 1471 |