Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000378

Physical Location & Seq

Genomic Coordinates Reverse (-)

3647533 .. 3648637

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1022100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGAAGCTTTTGATGAAGATGGAAGCTGATCCGACGGTTATTGTGGACTGGCATGCTTATGCTGTTGCAGCAGACGCTTTCTTGAAGGCTGGAGAATTGGAGAAGACATCGGCATTGCTGAGGAAATCGGAGCGACTCATTACAAGTAAAACAAGAAAGTCTGGTTACGAATTTTTGATGACTTCACATGCTGCTGTTGGTAATAAGCACGAGGTTGATCGAATTTGGGAATTGTACAAAGATGTCGTAGGATTCTACAATAGTGGGTATCGCTGTATGATAAGTTCGTTGGTGAAATTGGATGACATTGAAGGTGCTGAAAAAATTGTGGAGGAATGGGAATGTGGAAACAAACTATTCGACATTCAAACACCCAACTTGTTGATCAATGCTTACTGCAAGAAAGGTCTTTTGGAGAAGGCCAGATCATACGCAGAGAAGTTTTCAGAGGGTGGGAAGGAGGATTGTAGAACTTGGGGCATATTGGCTACTGGATATCATATGAATGGTCAGATGGCAGAGGCAGTGGAAACATTGAAAACGGCAGCAAGCTTGGCATGTCGACCAGGGTGGAAGTTTGATCGTTCAACTGTGTCTGCATGCTTTGATTACTTGAGAGAGAAGGGGGATGTGGAAGCAGCACATGAATTGTTGAGATTATTCAGAGAAATGGGTCATCTTCCAACAGATTTGTTTGATAAAATTGGAAGTTATATTGATGGTGGTGAACCTCCTATGGAAAGGATTGATAAAGTTCAGGATCGCGGGATGGATTCGACAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

263

Amino Acids

29.59

Weight (kDa)

5.52

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20710 AT2G20710 AT2G20720
fragaria_vesca	FvH4_6g21294 FvH4_6g21300 FvH4_6g21300 FvH4_6g21300
malus_domestica	MD02G1294300.v1.1 MD05G1022100.v1.1 MD05G1022200.v1.1 MD05G1046500.v1.1 MD09G1248800.v1.1 MD12G1049300.v1.1 MD17G1241400.v1.1
prunus_persica	Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.3G136900_v2.0.a1 Prupe.7G086900_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1 Prupe.8G026200_v2.0.a1
pyrus_communis	pycom02g24780 pycom05g01290 pycom05g01300 pycom09g16570 pycom12g04420 pycom14g03980 pycom17g24460
rosa_chinensis	RchiOBHm_Chr3g0477821 RchiOBHm_Chr3g0477851 RchiOBHm_Chr3g0477861 RchiOBHm_Chr3g0477891 RchiOBHm_Chr6g0275941 RchiOBHm_Chr6g0276181
rosa_laevigata	RLG00000013421 RLG00000013422 RLG00000023681 RLG00000023684 RLG00000023685 RLG00000023686 RLG00000023687 RLG00000023689
rosa_multiflora	Rmu_co8131942.1_g000001 Rmu_co8189010.1_g000001 Rmu_co8432533.1_g000001 Rmu_sc0002030.1_g000001 Rmu_sc0002030.1_g000002 Rmu_sc0005991.1_g000015 Rmu_sc0005991.1_g000019 Rmu_sc0005991.1_g000020 Rmu_sc0005991.1_g000021 Rmu_sc0017665.1_g000003 Rmu_sc0017665.1_g000006 Rmu_sc0017665.1_g000007 Rmu_sc0017867.1_g000002 Rmu_sc0017867.1_g000003 Rmu_sc0022989.1_g000003 Rmu_sc0022990.1_g000001 Rmu_ssc0000201.1_g000012 Rmu_ssc0000201.1_g000013 Rmu_ssc0000201.1_g000014
rosa_roxburghii	Rroxscaffold_6G00403620 Rroxscaffold_6G00403640 Rroxscaffold_6G00403650 Rroxscaffold_6G00403660 Rroxscaffold_6G00403690 Rroxscaffold_7G00192760
rosa_rugosa	Rorug03G0163500 Rorug03G0163600 Rorug03G0163800 Rorug06G0097700
rosa_samantha	Rh3AG213800 Rh3AG214000 Rh3AG214100 Rh3AG214200 Rh3AG214400 Rh3BG247600 Rh3BG247700 Rh3BG248000 Rh3CG241100 Rh3CG241500 Rh3CG241700 Rh3CG242000 Rh3DG240500 Rh3DG240900 Rh3DG241000 Rh3DG241100 Rh3DG241300 Rh6AG209100 Rh6AG210500 Rh6BG213200 Rh6BG214700 Rh6CG216100 Rh6CG217400 Rh6CG217500 Rh6DG205500 Rh6DG207000
rosa_wichuraiana	Rw3G019320 Rw6G018230 Rw6G018340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	1 cut(s)	768
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	2 cut(s)	26, 771
AcsI	RAATTY	2 cut(s)	173, 225
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	5 cut(s)	88, 314, 371, 541, 591
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	3 cut(s)	10, 29, 555
AluI	AGCT	3 cut(s)	10, 29, 555
AlwI	GGATC	2 cut(s)	26, 771
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	4 cut(s)	71, 194, 548, 641
ApoI	RAATTY	2 cut(s)	173, 225
AsuHPI	GGTGA	2 cut(s)	307, 740
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	83, 181, 560, 653
BccI	CCATC	4 cut(s)	16, 511, 716, 766
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	387
BisI	GCNGC	4 cut(s)	72, 195, 549, 642
BlsI	GCNGC	4 cut(s)	73, 196, 550, 643
Bme1390I	CCNGG	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	637
BsaJI	CCNNGG	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	56, 499
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	3 cut(s)	310, 637, 777
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	56, 499
BseXI	GCAGC	4 cut(s)	83, 181, 560, 653
Bsh1236I	CGCG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
BspACI	CCGC	1 cut(s)	768
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	768
BspPI	GGATC	2 cut(s)	26, 771
BsrDI	GCAATG	1 cut(s)	116
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	56, 499
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	40, 595, 784
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	57, 553, 604
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	310, 637, 777
BstFNI	CGCG	1 cut(s)	768
BstKTI	GATC	6 cut(s)	34, 223, 390, 431, 586, 766
BstMBI	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 77, 557
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	4 cut(s)	59, 194, 564, 606
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	768
BstV1I	GCAGC	4 cut(s)	83, 181, 560, 653
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	3 cut(s)	310, 637, 777
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	3 cut(s)	57, 553, 604
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	5 cut(s)	56, 191, 561, 603, 647
CviJI	RGCY	6 cut(s)	10, 29, 92, 425, 491, 555
CviKI_1	RGCY	6 cut(s)	10, 29, 92, 425, 491, 555
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	6 cut(s)	33, 222, 389, 430, 585, 765
DpnII	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
Eco32I	GATATC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	500
FaeI	CATG	5 cut(s)	59, 194, 564, 606, 650
FatI	CATG	5 cut(s)	55, 190, 560, 602, 646
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	4 cut(s)	72, 195, 549, 642
FokI	GGATG	3 cut(s)	317, 644, 784
Fsp4HI	GCNGC	4 cut(s)	72, 195, 549, 642
GluI	GCNGC	4 cut(s)	72, 195, 549, 642
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	59, 194, 564, 606, 650
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HindIII	AAGCTT	2 cut(s)	8, 553
HinfI	GANTC	3 cut(s)	138, 255, 776
HphI	GGTGA	2 cut(s)	307, 740
Hpy166II	GTNNAC	3 cut(s)	49, 566, 731
Hpy188I	TCNGA	5 cut(s)	36, 133, 451, 516, 668
Hpy188III	TCNNGA	2 cut(s)	85, 761
Hpy8I	GTNNAC	3 cut(s)	49, 566, 731
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	5 cut(s)	82, 308, 415, 454, 619
HpyCH4III	ACNGT	3 cut(s)	40, 595, 784
HpyCH4V	TGCA	3 cut(s)	71, 402, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 77, 557
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	5 cut(s)	59, 194, 564, 606, 650
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	37, 78, 150, 439, 480, 555, 582, 746
Lsp1109I	GCAGC	4 cut(s)	83, 181, 560, 653
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	6 cut(s)	33, 222, 389, 430, 585, 765
MboI	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
MboII	GAAGA	3 cut(s)	31, 118, 674
MluCI	AATT	8 cut(s)	98, 173, 225, 233, 299, 327, 650, 705
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	59, 710
MnlI	CCTC	7 cut(s)	117, 208, 328, 445, 457, 517, 744
MslI	CAYNNNNRTG	2 cut(s)	60, 507
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	768
MwoI	GCNNNNNNNGC	3 cut(s)	71, 77, 557
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
NlaIII	CATG	5 cut(s)	59, 194, 564, 606, 650
NspI	RCATGY	4 cut(s)	59, 194, 564, 606
PaeI	GCATGC	2 cut(s)	59, 606
PfeI	GAWTC	2 cut(s)	255, 776
PkrI	GCNGC	4 cut(s)	73, 196, 550, 643
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PsrI	GAACNNNNNNTAC	2 cut(s)	271, 303
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	60, 507
SalI	GTCGAC	1 cut(s)	564
SatI	GCNGC	4 cut(s)	72, 195, 549, 642
Sau3AI	GATC	6 cut(s)	31, 220, 387, 428, 583, 763
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	570
SetI	ASST	7 cut(s)	12, 31, 219, 319, 412, 557, 736
SmiMI	CAYNNNNRTG	2 cut(s)	60, 507
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SphI	GCATGC	2 cut(s)	59, 606
Sse9I	AATT	8 cut(s)	98, 173, 225, 233, 299, 327, 650, 705
SsiI	CCGC	1 cut(s)	768
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	40, 595, 784
TaqI	TCGA	4 cut(s)	223, 363, 565, 779
TasI	AATT	8 cut(s)	98, 173, 225, 233, 299, 327, 650, 705
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	255, 776
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	4 cut(s)	71, 194, 548, 641
TspDTI	ATGAA	3 cut(s)	32, 521, 663
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	173, 225
XceI	RCATGY	4 cut(s)	59, 194, 564, 606
XmiI	GTMKAC	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.