Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027163.1

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Reverse (-)

2361 .. 5840

Gene Structure 3480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027163.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgcttgcggttgtgcatgatcttttacatggaagcttgaggaggagtttgagacaactgaggtggattgagaggatgaaagttgcaattggtgtggcgaaagctttggagtacctttgtcattctcacaaccctcccatcattcatagggatgtcaaatgcccctttggtgttgtcggaacgtttggatacttagcccaggttgatgaaaacatagatgtgtactcatatggagcggtgcttctagaaatcattactgggaaagaggctattcaaagtttcaaaccgaccaggaggtttatccccgacagccatcctcgaccaaaacttccagaaactcatggctgcctggcagctacttctctcttttattctcctcatgttgatcttggagtctccgaagtagacgccacaatgcaggatgtccactactacatggtgctcgtcttctcacctgatatagccggatttactagcaccattccaactatttcgaggatgcgttcggggctgtcaatctgtgaggttgatggtcgttttgttttgcaatttgacagagtggcatatcagaattgtatcctacatggaggatcatggccgttgtggaacgaaggacaagttgaaagggtttttcctcgtgttgatggatgtgataaaaccccgctgaaagaagtggaggatatgtgggctaagccaccgctatctgccacggctagtttatccctgcattccctaatggggtttagggtttctgacaaactaggtttactcaaaggcctgacccacccgactccgccacggccagtttctggcaatgtattcactattggaggcattttggcaaacaagatctttctaactctggcgttggtggaagctccaaaattggtggtggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

299

Amino Acids

33.17

Weight (kDa)

7.71

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccBSI	CCGCTC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	5 cut(s)	8, 236, 662, 698, 794
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	1 cut(s)	598
AcoI	YGGCCR	2 cut(s)	596, 800
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	2 cut(s)	113, 224
AfiI	CCNNNNNNNGG	2 cut(s)	738, 809
AgsI	TTSAA	3 cut(s)	275, 283, 623
AjnI	CCWGG	3 cut(s)	198, 290, 348
AluBI	AGCT	4 cut(s)	36, 104, 356, 878
AluI	AGCT	4 cut(s)	36, 104, 356, 878
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	46, 400
AlwI	GGATC	1 cut(s)	598
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	3 cut(s)	596, 775, 800
ApeKI	GCWGC	2 cut(s)	345, 353
AsuHPI	GGTGA	1 cut(s)	444
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	332, 365
BccI	CCATC	4 cut(s)	146, 321, 524, 638
BceAI	ACGGC	3 cut(s)	583, 726, 815
BciT130I	CCWGG	3 cut(s)	200, 292, 350
BciVI	GTATCC	2 cut(s)	182, 587
BcoDI	GTCTC	2 cut(s)	46, 400
BfaI	CTAG	4 cut(s)	245, 474, 714, 761
BfuI	GTATCC	2 cut(s)	182, 587
BglII	AGATCT	1 cut(s)	849
BisI	GCNGC	2 cut(s)	346, 354
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	2 cut(s)	347, 355
Bme1390I	CCNGG	3 cut(s)	200, 292, 350
BmrFI	CCNGG	3 cut(s)	200, 292, 350
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	489
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	439
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	198, 708, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 809
Bse1I	ACTGG	2 cut(s)	262, 803
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	3 cut(s)	200, 292, 350
BseDI	CCNNGG	3 cut(s)	198, 708, 797
BseGI	GGATG	6 cut(s)	81, 157, 313, 427, 504, 653
BseLI	CCNNNNNNNGG	2 cut(s)	738, 809
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	262, 803
BseRI	GAGGAG	3 cut(s)	55, 58, 366
BseXI	GCAGC	2 cut(s)	332, 365
BshFI	GGCC	3 cut(s)	598, 777, 802
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	738, 809
BsmAI	GTCTC	2 cut(s)	46, 400
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	598, 777, 802
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	19, 385, 590, 849
Bsp1720I	GCTNAGC	1 cut(s)	690
BspACI	CCGC	5 cut(s)	8, 236, 662, 698, 794
BspANI	GGCC	3 cut(s)	598, 777, 802
BspCNI	CTCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	2 cut(s)	262, 803
BssECI	CCNNGG	3 cut(s)	198, 708, 797
BssMI	GATC	4 cut(s)	19, 385, 590, 849
BssNI	GRCGYC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	3 cut(s)	200, 292, 350
BstACI	GRCGYC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	59, 193, 690
BstDSI	CCRYGG	2 cut(s)	708, 797
BstF5I	GGATG	6 cut(s)	81, 157, 313, 427, 504, 653
BstKTI	GATC	4 cut(s)	22, 388, 593, 852
BstMAI	GTCTC	2 cut(s)	46, 400
BstMBI	GATC	4 cut(s)	19, 385, 590, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	3 cut(s)	200, 292, 350
BstSCI	CCNGG	3 cut(s)	198, 290, 348
BstV1I	GCAGC	2 cut(s)	332, 365
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	849
BstYI	RGATCY	1 cut(s)	849
BsuI	GTATCC	2 cut(s)	182, 587
BsuRI	GGCC	3 cut(s)	598, 777, 802
BtgI	CCRYGG	2 cut(s)	708, 797
BtsCI	GGATG	6 cut(s)	81, 157, 313, 427, 504, 653
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	809
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	112, 223
CspCI	CAANNNNNGTGG	5 cut(s)	44, 75, 79, 110, 870
CviAII	CATG	7 cut(s)	17, 29, 341, 380, 436, 584, 594
CviQI	GTAC	2 cut(s)	112, 223
DdeI	CTNAG	3 cut(s)	59, 193, 690
DpnI	GATC	4 cut(s)	21, 387, 592, 851
DpnII	GATC	4 cut(s)	19, 385, 590, 849
EaeI	YGGCCR	2 cut(s)	596, 800
EciI	GGCGGA	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	777
EcoRII	CCWGG	3 cut(s)	198, 290, 348
FaeI	CATG	7 cut(s)	20, 32, 344, 383, 439, 587, 597
FatI	CATG	7 cut(s)	16, 28, 340, 379, 435, 583, 593
FauI	CCCGC	1 cut(s)	669
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	346, 354
FokI	GGATG	6 cut(s)	88, 164, 300, 434, 511, 660
Fsp4HI	GCNGC	2 cut(s)	346, 354
FspBI	CTAG	4 cut(s)	245, 474, 714, 761
GluI	GCNGC	2 cut(s)	346, 354
HaeIII	GGCC	3 cut(s)	598, 777, 802
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	7 cut(s)	20, 32, 344, 383, 439, 587, 597
HindIII	AAGCTT	2 cut(s)	34, 102
HinfI	GANTC	2 cut(s)	393, 790
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	4 cut(s)	223, 406, 427, 767
Hpy188I	TCNGA	4 cut(s)	179, 400, 570, 754
Hpy188III	TCNNGA	2 cut(s)	245, 332
Hpy8I	GTNNAC	4 cut(s)	223, 406, 427, 767
HpyAV	CCTTC	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	5 cut(s)	16, 86, 418, 547, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	59, 193, 690
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	7 cut(s)	20, 32, 344, 383, 439, 587, 597
Kzo9I	GATC	4 cut(s)	19, 385, 590, 849
LmnI	GCTCC	2 cut(s)	233, 883
Lsp1109I	GCAGC	2 cut(s)	332, 365
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	4 cut(s)	245, 474, 714, 761
MaeII	ACGT	1 cut(s)	182
MalI	GATC	4 cut(s)	21, 387, 592, 851
MbiI	CCGCTC	1 cut(s)	236
MboI	GATC	4 cut(s)	19, 385, 590, 849
MboII	GAAGA	1 cut(s)	439
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	1 cut(s)	849
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	4 cut(s)	87, 548, 571, 884
MlyI	GAGTC	2 cut(s)	402, 784
MmeI	TCCRAC	2 cut(s)	157, 509
MslI	CAYNNNNRTG	2 cut(s)	150, 218
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	200, 292, 350
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	3 cut(s)	200, 292, 350
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	19, 385, 590, 849
NlaIII	CATG	7 cut(s)	20, 32, 344, 383, 439, 587, 597
PceI	AGGCCT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	727
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	347, 355
PleI	GAGTC	2 cut(s)	401, 784
PpsI	GAGTC	2 cut(s)	401, 784
Psp1406I	AACGTT	1 cut(s)	182
Psp6I	CCWGG	3 cut(s)	198, 290, 348
PspGI	CCWGG	3 cut(s)	198, 290, 348
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	849
RsaI	GTAC	2 cut(s)	113, 224
RsaNI	GTAC	2 cut(s)	112, 223
RseI	CAYNNNNRTG	2 cut(s)	150, 218
SatI	GCNGC	2 cut(s)	346, 354
Sau3AI	GATC	4 cut(s)	19, 385, 590, 849
SchI	GAGTC	2 cut(s)	402, 784
ScrFI	CCNGG	3 cut(s)	200, 292, 350
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	1 cut(s)	489
SmiMI	CAYNNNNRTG	2 cut(s)	150, 218
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	87, 548, 571, 884
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	5 cut(s)	8, 236, 662, 698, 794
SspMI	CTAG	4 cut(s)	245, 474, 714, 761
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	3 cut(s)	198, 290, 348
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	319, 494
TasI	AATT	4 cut(s)	87, 548, 571, 884
TatI	WGTACW	1 cut(s)	222
TseI	GCWGC	2 cut(s)	345, 353
TspDTI	ATGAA	3 cut(s)	92, 134, 222
Van91I	CCANNNNNTGG	1 cut(s)	809
XbaI	TCTAGA	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	4 cut(s)	245, 474, 714, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.