Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009253.1

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

758 .. 1269

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009253.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgcttgcggttgtgcatgatcttttacgtggaagcttgaggaggagtttgagacaactgaggtggattgagaggatgaaagttgcaattggtgtggcgaaagctttggagtacctttgtcattctcacaaccctcccatcattcatagggatgtcaattgtctgagtttggagcagcaatggtacttatcaatctcagcatgcagatgcccctttgatgttgtcggaacgtttggatacttagcccaggttgatgaaaacatagatgtgtactcatatggagcggtgcttctagaaatcattactgggaaagaggctattcaaagtttcaaaccgaccaggagattcgagaaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

8.76

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	284
AciI	CCGC	2 cut(s)	8, 284
AclI	AACGTT	1 cut(s)	230
AfaI	GTAC	3 cut(s)	113, 185, 272
AgsI	TTSAA	2 cut(s)	323, 331
AjnI	CCWGG	2 cut(s)	246, 338
AluBI	AGCT	3 cut(s)	36, 104, 356
AluI	AGCT	3 cut(s)	36, 104, 356
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	248, 340
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	248, 340
BmrFI	CCNGG	2 cut(s)	248, 340
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	310
Bse3DI	GCAATG	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	248, 340
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	81, 157
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	50, 155, 210
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	55, 58
BseXI	GCAGC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	8, 284
BspCNI	CTCAG	3 cut(s)	51, 156, 209
BsrBI	CCGCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	248, 340
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	6, 202
BstDEI	CTNAG	5 cut(s)	59, 164, 196, 241, 357
BstF5I	GGATG	2 cut(s)	81, 157
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	248, 340
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	2 cut(s)	246, 338
BstV1I	GCAGC	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	81, 157
Cac8I	GCNNGC	2 cut(s)	6, 202
Csp6I	GTAC	3 cut(s)	112, 184, 271
CspCI	CAANNNNNGTGG	4 cut(s)	44, 75, 79, 110
CviAII	CATG	2 cut(s)	17, 201
CviJI	RGCY	5 cut(s)	36, 104, 245, 317, 356
CviKI_1	RGCY	5 cut(s)	36, 104, 245, 317, 356
CviQI	GTAC	3 cut(s)	112, 184, 271
DdeI	CTNAG	5 cut(s)	59, 164, 196, 241, 357
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	246, 338
FaeI	CATG	2 cut(s)	20, 204
FaiI	YATR	6 cut(s)	18, 147, 202, 263, 277, 279
FatI	CATG	2 cut(s)	16, 200
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	2 cut(s)	88, 164
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	20, 204
HindIII	AAGCTT	3 cut(s)	34, 102, 354
HinfI	GANTC	1 cut(s)	345
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	165, 227
Hpy188III	TCNNGA	2 cut(s)	293, 349
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	28, 230
HpyCH4V	TGCA	3 cut(s)	16, 86, 204
HpyF3I	CTNAG	5 cut(s)	59, 164, 196, 241, 357
HpySE526I	ACGT	2 cut(s)	28, 230
Hsp92II	CATG	2 cut(s)	20, 204
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	172, 281
LpnPI	CCDG	5 cut(s)	233, 260, 291, 325, 352
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	28, 230
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	284
MboI	GATC	1 cut(s)	19
MfeI	CAATTG	2 cut(s)	87, 157
MluCI	AATT	2 cut(s)	87, 157
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	6 cut(s)	33, 36, 54, 66, 144, 307
MslI	CAYNNNNRTG	3 cut(s)	150, 205, 266
MspR9I	CCNGG	2 cut(s)	248, 340
MunI	CAATTG	2 cut(s)	87, 157
MvaI	CCWGG	2 cut(s)	248, 340
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	20, 204
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	246, 338
PspGI	CCWGG	2 cut(s)	246, 338
RsaI	GTAC	3 cut(s)	113, 185, 272
RsaNI	GTAC	3 cut(s)	112, 184, 271
RseI	CAYNNNNRTG	3 cut(s)	150, 205, 266
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	248, 340
SetI	ASST	8 cut(s)	31, 38, 65, 106, 117, 233, 252, 358
SfaNI	GCATC	1 cut(s)	197
SmiMI	CAYNNNNRTG	3 cut(s)	150, 205, 266
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	87, 157
SsiI	CCGC	2 cut(s)	8, 284
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	246, 338
TaiI	ACGT	2 cut(s)	31, 233
TaqI	TCGA	1 cut(s)	348
TasI	AATT	2 cut(s)	87, 157
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	345
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	92, 134, 270
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.