Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

41368973 .. 41371090

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGTTCGAAGTCATACAATTGAACCCCAAATGCTATCGTGCCGGTGCAAGACAGAGAAGACCAAGAGGACGATTATTGCTGGCCTAAATTCAGATACCTGCAGTAGAGAAATGCTGCTTGGATTGCTCACTTCTGTTGTTAAACCAGAAGACACTGTGATAGCTATTCATGTTGAAGAAACAGATGTTACATTTGATCCGAACACTTTCCACATTCATGAAGATCTCTGCAAGTCCAAGAAGGTAGATTTCCAAATAAAGGTCTGCATAGGAGATTCATACATTTCGGAATTAACTTACCAAGTTAGAGTCAGCTATGCTACAATCCTTGCACTTGGTTGCAGCTCTTCAGGGCTCAATGTTTCAGCTACCAGTGCTTGCCTGAAAGGTTTACCTCCTTCATGCATACTTCTGGTAATGAATAGTGTTGGAAGAATCTTATTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGGTAGCCCTGCCCCTGCAATCTTCTCAGTCATTTTCTTCAGTGTACGCTTGTTATAATCAGTCAAACACCAACCGGAAATTGCACAAGTCATTGACAATACCATCTGCTCCTCCCGTATCATCAATTCGGCGAATTACTAGAAGGGCACTCTCTTCTGCACATAAAACAGTGGAGGTTTCCGATTTTGTGGCTCAAAAGCTGTTTCATAGATTGGGACTACTAGAAGCAGAAGGATCCAGCAGGCATTTCGCCTCCCAAGAGCTTCGCTATGCAACTAATAATTTCAGCTCTGACATGGTGATTGGAGAGGGTGGACATAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTTAGTGATCTTTTCCGCGAAGTAGATTTTCTATCTAGTATGAATCACAAGAACATTGTTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAAGCTTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAGGTTGCAATTGGTGTGGCAAAAGCTTTGGAGTACCTTCATCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGTGAACCAATAGCAAGGTCCCTATTGAGCTGTGGCATATGCGAACGTCTTATTGATCCTTACTTGTCTGAGGACTACAACAAGGAAGAGATGGAAGTAATGATGGTAGCTGCACGCCTCTGCCTTATGCATTCATCTTCTAGAAGACCAACCATGAAAACAATACTTAGGCTGTTTGAGGAGCCAGATCACTGGTTAAGGATGCAGAGAGAAAGAGACGAGTTTCTGAAAGGGACAAAATCAAAAGATGATTCAGCCCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

471

Amino Acids

52.89

Weight (kDa)

8.72

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	257 - 383	2.4e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	259 - 383	2.5e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	107
AccII	CGCG	1 cut(s)	891
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	4 cut(s)	191, 708, 721, 1199
AcsI	RAATTY	2 cut(s)	88, 1009
AcuI	CTGAAG	2 cut(s)	333, 501
AfaI	GTAC	3 cut(s)	524, 809, 1076
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	23, 176, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
Alw26I	GTCTC	2 cut(s)	1009, 1359
AlwI	GGATC	4 cut(s)	191, 708, 721, 1199
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	115, 342, 836, 839, 1259
ApoI	RAATTY	2 cut(s)	88, 1009
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	1167
AsuHPI	GGTGA	1 cut(s)	790
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	1167
BaeGI	GKGCMC	1 cut(s)	628
BamHI	GGATCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	357
BbsI	GAAGAC	4 cut(s)	65, 156, 1116, 1300
BbvI	GCAGC	5 cut(s)	102, 354, 823, 851, 1246
BccI	CCATC	5 cut(s)	589, 821, 1109, 1234, 1246
BcgI	CGANNNNNNTGC	2 cut(s)	709, 743
BcoDI	GTCTC	2 cut(s)	1009, 1359
BfaI	CTAG	4 cut(s)	618, 701, 909, 1290
BfmI	CTRYAG	2 cut(s)	100, 837
BfuAI	ACCTGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	5 cut(s)	116, 343, 837, 840, 1260
BlsI	GCNGC	5 cut(s)	117, 344, 838, 841, 1261
Bme18I	GGWCC	1 cut(s)	1167
BmgT120I	GGNCC	1 cut(s)	1167
BmiI	GGNNCC	3 cut(s)	715, 1169, 1332
BmsI	GCATC	2 cut(s)	954, 1341
BpiI	GAAGAC	4 cut(s)	65, 156, 1116, 1300
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	1021
BsaWI	WCCGGW	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	372, 1346
BseGI	GGATG	3 cut(s)	1044, 1120, 1356
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	518, 1209
BseNI	ACTGG	2 cut(s)	372, 1346
BseRI	GAGGAG	4 cut(s)	579, 1018, 1127, 1343
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	5 cut(s)	102, 354, 823, 851, 1246
BsgI	GTGCAG	2 cut(s)	621, 1245
Bsh1236I	CGCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	43, 553
BslFI	GGGAC	3 cut(s)	708, 1153, 1396
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	1009, 1359
BsmBI	CGTCTC	1 cut(s)	1359
BsmFI	GGGAC	3 cut(s)	708, 1153, 1396
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	357, 628
Bsp143I	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	2 cut(s)	517, 1210
BspFNI	CGCG	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	3 cut(s)	715, 1169, 1332
BspMAI	CTGCAG	2 cut(s)	104, 841
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	4 cut(s)	191, 708, 721, 1199
BspQI	GCTCTTC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	372, 1346
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
Bst4CI	ACNGT	2 cut(s)	157, 649
Bst6I	CTCTTC	3 cut(s)	352, 637, 1230
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	5 cut(s)	82, 379, 722, 969, 1264
BstDEI	CTNAG	4 cut(s)	504, 1022, 1218, 1316
BstF5I	GGATG	3 cut(s)	1044, 1120, 1356
BstFNI	CGCG	1 cut(s)	891
BstKTI	GATC	7 cut(s)	199, 226, 716, 883, 985, 1207, 1339
BstMAI	GTCTC	2 cut(s)	1009, 1359
BstMBI	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 374
BstSFI	CTRYAG	2 cut(s)	100, 837
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	891
BstV1I	GCAGC	5 cut(s)	102, 354, 823, 851, 1246
BstV2I	GAAGAC	4 cut(s)	65, 156, 1116, 1300
BstX2I	RGATCY	2 cut(s)	223, 713
BstXI	CCANNNNNNTGG	1 cut(s)	1341
BstYI	RGATCY	2 cut(s)	223, 713
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	1044, 1120, 1356
BtsIMutI	CAGTG	5 cut(s)	153, 379, 525, 654, 1339
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	5 cut(s)	82, 379, 722, 969, 1264
CciI	TCATGA	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	1167
Csp6I	GTAC	3 cut(s)	523, 808, 1075
CspCI	CAANNNNNGTGG	4 cut(s)	1007, 1038, 1042, 1073
CviAII	CATG	7 cut(s)	170, 218, 402, 775, 992, 1145, 1303
CviQI	GTAC	3 cut(s)	523, 808, 1075
DdeI	CTNAG	4 cut(s)	504, 1022, 1218, 1316
DpnI	GATC	7 cut(s)	198, 225, 715, 882, 984, 1206, 1338
DpnII	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
Eam1104I	CTCTTC	3 cut(s)	352, 637, 1230
EarI	CTCTTC	3 cut(s)	352, 637, 1230
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	1167
Eco57I	CTGAAG	2 cut(s)	333, 501
EcoO109I	RGGNCCY	1 cut(s)	1167
EcoT22I	ATGCAT	2 cut(s)	407, 1281
EcoT38I	GRGCYC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	1359
FaeI	CATG	7 cut(s)	173, 221, 405, 778, 995, 1148, 1306
FaqI	GGGAC	3 cut(s)	708, 1153, 1396
FatI	CATG	7 cut(s)	169, 217, 401, 774, 991, 1144, 1302
FauNDI	CATATG	1 cut(s)	1187
Fnu4HI	GCNGC	5 cut(s)	116, 343, 837, 840, 1260
FokI	GGATG	3 cut(s)	1051, 1127, 1363
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	116, 343, 837, 840, 1260
FspBI	CTAG	4 cut(s)	618, 701, 909, 1290
GluI	GCNGC	5 cut(s)	116, 343, 837, 840, 1260
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	2 cut(s)	43, 553
Hin1II	CATG	7 cut(s)	173, 221, 405, 778, 995, 1148, 1306
HindIII	AAGCTT	2 cut(s)	997, 1065
HinfI	GANTC	5 cut(s)	275, 309, 435, 916, 1400
HpaII	CCGG	2 cut(s)	43, 553
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	5 cut(s)	392, 523, 794, 808, 1154
Hpy188I	TCNGA	9 cut(s)	94, 201, 289, 447, 661, 772, 936, 1219, 1377
Hpy188III	TCNNGA	3 cut(s)	218, 821, 1290
Hpy8I	GTNNAC	5 cut(s)	392, 523, 794, 808, 1154
HpyAV	CCTTC	6 cut(s)	235, 408, 615, 704, 1036, 1088
HpyCH4III	ACNGT	2 cut(s)	157, 649
HpyCH4IV	ACGT	1 cut(s)	1195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 374
HpyF3I	CTNAG	4 cut(s)	504, 1022, 1218, 1316
HpySE526I	ACGT	1 cut(s)	1195
Hsp92II	CATG	7 cut(s)	173, 221, 405, 778, 995, 1148, 1306
Kzo9I	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
LguI	GCTCTTC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	592, 1330
Lsp1109I	GCAGC	5 cut(s)	102, 354, 823, 851, 1246
LweI	GCATC	2 cut(s)	954, 1341
MaeI	CTAG	4 cut(s)	618, 701, 909, 1290
MaeII	ACGT	1 cut(s)	1195
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	7 cut(s)	198, 225, 715, 882, 984, 1206, 1338
MboI	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
MfeI	CAATTG	2 cut(s)	18, 1050
MflI	RGATCY	2 cut(s)	223, 713
MhlI	GDGCHC	2 cut(s)	357, 628
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	409
Mph1103I	ATGCAT	2 cut(s)	407, 1281
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	3 cut(s)	141, 293, 1346
MslI	CAYNNNNRTG	3 cut(s)	216, 1113, 1149
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	2 cut(s)	43, 553
MunI	CAATTG	2 cut(s)	18, 1050
Mva1269I	GAATGC	1 cut(s)	1279
MvnI	CGCG	1 cut(s)	891
MwoI	GCNNNNNNNGC	2 cut(s)	124, 374
NdeI	CATATG	1 cut(s)	1187
NdeII	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
NlaIII	CATG	7 cut(s)	173, 221, 405, 778, 995, 1148, 1306
NlaIV	GGNNCC	3 cut(s)	715, 1169, 1332
NsiI	ATGCAT	2 cut(s)	407, 1281
NspV	TTCGAA	1 cut(s)	7
PagI	TCATGA	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	1279
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	275, 435, 916, 1400
PkrI	GCNGC	5 cut(s)	117, 344, 838, 841, 1261
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	1167
PspN4I	GGNNCC	3 cut(s)	715, 1169, 1332
PspPI	GGNCC	1 cut(s)	1167
PspPPI	RGGWCCY	1 cut(s)	1167
PstI	CTGCAG	2 cut(s)	104, 841
PsuI	RGATCY	2 cut(s)	223, 713
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	3 cut(s)	524, 809, 1076
RsaNI	GTAC	3 cut(s)	523, 808, 1075
RseI	CAYNNNNRTG	3 cut(s)	216, 1113, 1149
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	141, 293, 1346
SatI	GCNGC	5 cut(s)	116, 343, 837, 840, 1260
Sau3AI	GATC	7 cut(s)	196, 223, 713, 880, 982, 1204, 1336
Sau96I	GGNCC	1 cut(s)	1167
SchI	GAGTC	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	357, 628
SfaNI	GCATC	2 cut(s)	954, 1341
SfcI	CTRYAG	2 cut(s)	100, 837
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	1 cut(s)	1167
SmiMI	CAYNNNNRTG	3 cut(s)	216, 1113, 1149
SmlI	CTYRAG	1 cut(s)	1000
SmoI	CTYRAG	1 cut(s)	1000
SsiI	CCGC	1 cut(s)	889
SspMI	CTAG	4 cut(s)	618, 701, 909, 1290
TaaI	ACNGT	2 cut(s)	157, 649
TaiI	ACGT	1 cut(s)	1198
TaqI	TCGA	2 cut(s)	7, 832
TfiI	GAWTC	4 cut(s)	275, 435, 916, 1400
Tru1I	TTAA	3 cut(s)	141, 293, 1346
Tru9I	TTAA	3 cut(s)	141, 293, 1346
TscAI	CASTG	5 cut(s)	160, 379, 525, 654, 1346
TseI	GCWGC	5 cut(s)	115, 342, 836, 839, 1259
TspRI	CASTG	5 cut(s)	160, 379, 525, 654, 1346
VpaK11BI	GGWCC	1 cut(s)	1167
XapI	RAATTY	2 cut(s)	88, 1009
XbaI	TCTAGA	1 cut(s)	1289
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	4 cut(s)	618, 701, 909, 1290
Zsp2I	ATGCAT	2 cut(s)	407, 1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.