RchiOBHm_Chr6g0279501

Protein kinase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
42628047 .. 42630729
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25064

Sequence Viewer

Length: 1641 bp
ATGGTTCGAAGTCATACAATTGAACCCCAAATGCTATCGTGCCGGTGCAAGACAGAGAAGACCAAGAGGACGATTATTGCTGGCCTAAATTCAGATACCTGCAGTAGAGAAATGCTGCTTGGATTGCTCACTTCTGTTGTTAAACCAGAAGACACTGTGATAGCTATTCATGTTGAAGAAACAGATGTTACATTTGATCCGAACACTTTCCACATTCATGAAGATCTCTGCAAGTCCAAGAAGGTAGATTTCCAAATAAAGGTCTGCATAGGAGATTCATACATTTCGGAATTAACTTACCAAGTTAGAGTCAGCTATGCTACAATCCTTGCACTTGGTTGCAGCTCTTCAGGGCTCAATGTTTCAGCTACCAGTGCTTGCCTGAAAGGTTTACCTCCTTCATGCATACTTCTGGTAATGAATAGTGTTGGAAGAATCTTATTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGGTAGCCCTGCCCCTGCAATCTTCTCAGTCATTTTCTTCAGTGTACGCTTGTTATAATCAGTCAAACACCAACCGGAAATTGCACAAGTCATTGACAATACCATCTGCTCCTCCCGTATCATCAATTCGGCGAATTACTAGAAGGGCACTCTCTTCTGCACATAAAACAGTGGAGGTTTCCGATTTTGTGGCTCAAAAGCTGTTTCATAGATTGGGACTACTAGAAGCAGAAGGATCCAGCAGGCATTTCGCCTCCCAAGAGCTTCGCTATGCAACTAATAATTTCAGCTCTGACATGGTGATTGGAGAGGGTGGACATAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTTAGTGATCTTTTCCGCGAAGTAGATTTTCTATCTAGTATGAATCACAAGAACATTGTTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAAGCTTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAGGTTGCAATTGGTGTGGCAAAAGCTTTGGAGTACCTTCATCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGTGAACCAATATTGTCCGATTTTGGAGCAGCAATGGTACTTCGTCAATCTCAGCATGCAGATGCGCCATTTGATGTTGTTGGGACGTTTGGATACTTAGCCCCAGAGTACATGATGTATGGCAAGGTTGATGAGAAGATAGATGTGTACTCATATGGAGTGGTGCTTCTAGAACTCATTACTGGGAAAGAGGCTATTCAAACCGACCAGGAGATTCGAGAAAGCTTAGTCCTTTGGGCAAGGTCCCTATTGAGCTGTGGCATATGCGAACGTCTTATTGATCCTTACTTGTCTGAGGACTACAACAAGGAAGAGATGGAAGTAATGATGGTAGCTGCACGCCTCTGCCTTATGCATTCATCTTCTAGAAGACCAACCATGAAAACAATACTTAGGCTGTTTGAGGAGCCAGATCACTGGTTAAGGATGCAGAGAGAAAGAGACGAGTTTCTGAAAGGGACAAAATCAAAAGATGATTCAGCCCTGTTTTGA

Protein Analysis

546

Amino Acids

61.3

Weight (kDa)

7.59

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 257 - 514 1.1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 259 - 515 1.1e-36 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 107
AccII CGCG 1 cut(s) 891
AciI CCGC 1 cut(s) 889
AclWI GGATC 4 cut(s) 191, 708, 721, 1424
AcsI RAATTY 2 cut(s) 88, 1009
AcuI CTGAAG 2 cut(s) 333, 501
AfaI GTAC 6 cut(s) 524, 809, 1076, 1188, 1259, 1298
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 4 cut(s) 23, 176, 824, 1349
AjnI CCWGG 1 cut(s) 1356
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
Alw26I GTCTC 2 cut(s) 1009, 1584
AlwI GGATC 4 cut(s) 191, 708, 721, 1424
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 6 cut(s) 115, 342, 836, 839, 1178, 1484
ApoI RAATTY 2 cut(s) 88, 1009
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 1 cut(s) 1392
AsuHPI GGTGA 1 cut(s) 790
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 1392
BaeGI GKGCMC 1 cut(s) 628
BamHI GGATCC 1 cut(s) 713
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 4 cut(s) 65, 156, 1116, 1525
BbvI GCAGC 6 cut(s) 102, 354, 823, 851, 1190, 1471
BccI CCATC 5 cut(s) 589, 821, 1109, 1459, 1471
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 1 cut(s) 1358
BciVI GTATCC 1 cut(s) 1235
BcoDI GTCTC 2 cut(s) 1009, 1584
BfaI CTAG 5 cut(s) 618, 701, 909, 1319, 1515
BfmI CTRYAG 2 cut(s) 100, 837
BfuAI ACCTGC 1 cut(s) 107
BfuI GTATCC 1 cut(s) 1235
BglII AGATCT 1 cut(s) 223
BisI GCNGC 6 cut(s) 116, 343, 837, 840, 1179, 1485
BlsI GCNGC 6 cut(s) 117, 344, 838, 841, 1180, 1486
Bme1390I CCNGG 1 cut(s) 1358
Bme18I GGWCC 1 cut(s) 1392
BmgT120I GGNCC 1 cut(s) 1392
BmiI GGNNCC 3 cut(s) 715, 1394, 1557
BmrFI CCNGG 1 cut(s) 1358
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 3 cut(s) 954, 1201, 1566
BmuI ACTGGG 1 cut(s) 1341
BpiI GAAGAC 4 cut(s) 65, 156, 1116, 1525
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 1021
BsaWI WCCGGW 1 cut(s) 552
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 3 cut(s) 372, 1336, 1571
Bse3DI GCAATG 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 1358
BseGI GGATG 3 cut(s) 1044, 1120, 1581
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 3 cut(s) 518, 1214, 1434
BseNI ACTGG 3 cut(s) 372, 1336, 1571
BseRI GAGGAG 4 cut(s) 579, 1018, 1127, 1568
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 6 cut(s) 102, 354, 823, 851, 1190, 1471
BsgI GTGCAG 2 cut(s) 621, 1470
Bsh1236I CGCG 1 cut(s) 891
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 43, 553
BslFI GGGAC 4 cut(s) 708, 1246, 1378, 1621
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 1009, 1584
BsmBI CGTCTC 1 cut(s) 1584
BsmFI GGGAC 4 cut(s) 708, 1246, 1378, 1621
BsmI GAATGC 1 cut(s) 1504
BsnI GGCC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 357, 628
Bsp143I GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
BspACI CCGC 1 cut(s) 889
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 3 cut(s) 517, 1213, 1435
BspFNI CGCG 1 cut(s) 891
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 715, 1394, 1557
BspMAI CTGCAG 2 cut(s) 104, 841
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 4 cut(s) 191, 708, 721, 1424
BspQI GCTCTTC 1 cut(s) 352
BspT104I TTCGAA 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 1188
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 3 cut(s) 372, 1336, 1571
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
Bst2UI CCWGG 1 cut(s) 1358
Bst4CI ACNGT 2 cut(s) 157, 649
Bst6I CTCTTC 3 cut(s) 352, 637, 1455
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 6 cut(s) 82, 379, 722, 969, 1206, 1489
BstDEI CTNAG 7 cut(s) 504, 1022, 1200, 1246, 1375, 1443, 1541
BstF5I GGATG 3 cut(s) 1044, 1120, 1581
BstFNI CGCG 1 cut(s) 891
BstHHI GCGC 1 cut(s) 1216
BstKTI GATC 7 cut(s) 199, 226, 716, 883, 985, 1432, 1564
BstMAI GTCTC 2 cut(s) 1009, 1584
BstMBI GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
BstMWI GCNNNNNNNGC 2 cut(s) 124, 374
BstNI CCWGG 1 cut(s) 1358
BstNSI RCATGY 1 cut(s) 1208
BstSCI CCNGG 1 cut(s) 1356
BstSFI CTRYAG 2 cut(s) 100, 837
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 6 cut(s) 102, 354, 823, 851, 1190, 1471
BstV2I GAAGAC 4 cut(s) 65, 156, 1116, 1525
BstX2I RGATCY 2 cut(s) 223, 713
BstXI CCANNNNNNTGG 1 cut(s) 1566
BstYI RGATCY 2 cut(s) 223, 713
BsuI GTATCC 1 cut(s) 1235
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 3 cut(s) 1044, 1120, 1581
BtsIMutI CAGTG 5 cut(s) 153, 379, 525, 654, 1564
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 6 cut(s) 82, 379, 722, 969, 1206, 1489
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 1392
Csp6I GTAC 6 cut(s) 523, 808, 1075, 1187, 1258, 1297
CspCI CAANNNNNGTGG 4 cut(s) 1007, 1038, 1042, 1073
CviAII CATG 9 cut(s) 170, 218, 402, 775, 992, 1145, 1205, 1261, 1528
CviQI GTAC 6 cut(s) 523, 808, 1075, 1187, 1258, 1297
DdeI CTNAG 7 cut(s) 504, 1022, 1200, 1246, 1375, 1443, 1541
DpnI GATC 7 cut(s) 198, 225, 715, 882, 984, 1431, 1563
DpnII GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
Eam1104I CTCTTC 3 cut(s) 352, 637, 1455
EarI CTCTTC 3 cut(s) 352, 637, 1455
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 1392
Eco57I CTGAAG 2 cut(s) 333, 501
EcoO109I RGGNCCY 1 cut(s) 1392
EcoRII CCWGG 1 cut(s) 1356
EcoT22I ATGCAT 2 cut(s) 407, 1506
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 1584
FaeI CATG 9 cut(s) 173, 221, 405, 778, 995, 1148, 1208, 1264, 1531
FaqI GGGAC 4 cut(s) 708, 1246, 1378, 1621
FatI CATG 9 cut(s) 169, 217, 401, 774, 991, 1144, 1204, 1260, 1527
FauNDI CATATG 2 cut(s) 1303, 1412
Fnu4HI GCNGC 6 cut(s) 116, 343, 837, 840, 1179, 1485
FokI GGATG 3 cut(s) 1051, 1127, 1588
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 6 cut(s) 116, 343, 837, 840, 1179, 1485
FspBI CTAG 5 cut(s) 618, 701, 909, 1319, 1515
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 6 cut(s) 116, 343, 837, 840, 1179, 1485
HaeIII GGCC 1 cut(s) 84
HapII CCGG 2 cut(s) 43, 553
HhaI GCGC 1 cut(s) 1216
Hin1II CATG 9 cut(s) 173, 221, 405, 778, 995, 1148, 1208, 1264, 1531
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HindIII AAGCTT 3 cut(s) 997, 1065, 1372
HinfI GANTC 6 cut(s) 275, 309, 435, 916, 1363, 1625
HpaII CCGG 2 cut(s) 43, 553
HphI GGTGA 1 cut(s) 790
Hpy166II GTNNAC 6 cut(s) 392, 523, 794, 808, 1154, 1297
Hpy188III TCNNGA 5 cut(s) 218, 821, 1319, 1367, 1515
Hpy8I GTNNAC 6 cut(s) 392, 523, 794, 808, 1154, 1297
HpyAV CCTTC 6 cut(s) 235, 408, 615, 704, 1036, 1088
HpyCH4III ACNGT 2 cut(s) 157, 649
HpyCH4IV ACGT 2 cut(s) 1235, 1420
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 374
HpyF3I CTNAG 7 cut(s) 504, 1022, 1200, 1246, 1375, 1443, 1541
HpySE526I ACGT 2 cut(s) 1235, 1420
Hsp92II CATG 9 cut(s) 173, 221, 405, 778, 995, 1148, 1208, 1264, 1531
HspAI GCGC 1 cut(s) 1214
Kzo9I GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 592, 1175, 1555
Lsp1109I GCAGC 6 cut(s) 102, 354, 823, 851, 1190, 1471
LweI GCATC 3 cut(s) 954, 1201, 1566
MaeI CTAG 5 cut(s) 618, 701, 909, 1319, 1515
MaeII ACGT 2 cut(s) 1235, 1420
MaeIII GTNAC 1 cut(s) 187
MalI GATC 7 cut(s) 198, 225, 715, 882, 984, 1431, 1563
MboI GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
MfeI CAATTG 2 cut(s) 18, 1050
MflI RGATCY 2 cut(s) 223, 713
MhlI GDGCHC 2 cut(s) 357, 628
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 409
Mph1103I ATGCAT 2 cut(s) 407, 1506
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 3 cut(s) 141, 293, 1571
MslI CAYNNNNRTG 4 cut(s) 216, 1113, 1149, 1209
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 2 cut(s) 43, 553
MspR9I CCNGG 1 cut(s) 1358
MunI CAATTG 2 cut(s) 18, 1050
Mva1269I GAATGC 1 cut(s) 1504
MvaI CCWGG 1 cut(s) 1358
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 2 cut(s) 124, 374
NdeI CATATG 2 cut(s) 1303, 1412
NdeII GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
NlaIII CATG 9 cut(s) 173, 221, 405, 778, 995, 1148, 1208, 1264, 1531
NlaIV GGNNCC 3 cut(s) 715, 1394, 1557
NsiI ATGCAT 2 cut(s) 407, 1506
NspI RCATGY 1 cut(s) 1208
NspV TTCGAA 1 cut(s) 7
PaeI GCATGC 1 cut(s) 1208
PagI TCATGA 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 352
PctI GAATGC 1 cut(s) 1504
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 5 cut(s) 275, 435, 916, 1363, 1625
PkrI GCNGC 6 cut(s) 117, 344, 838, 841, 1180, 1486
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PpuMI RGGWCCY 1 cut(s) 1392
PsiI TTATAA 1 cut(s) 534
Psp5II RGGWCCY 1 cut(s) 1392
Psp6I CCWGG 1 cut(s) 1356
PspGI CCWGG 1 cut(s) 1356
PspN4I GGNNCC 3 cut(s) 715, 1394, 1557
PspPI GGNCC 1 cut(s) 1392
PspPPI RGGWCCY 1 cut(s) 1392
PstI CTGCAG 2 cut(s) 104, 841
PsuI RGATCY 2 cut(s) 223, 713
PvuII CAGCTG 1 cut(s) 842
RsaI GTAC 6 cut(s) 524, 809, 1076, 1188, 1259, 1298
RsaNI GTAC 6 cut(s) 523, 808, 1075, 1187, 1258, 1297
RseI CAYNNNNRTG 4 cut(s) 216, 1113, 1149, 1209
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 141, 293, 1571
SatI GCNGC 6 cut(s) 116, 343, 837, 840, 1179, 1485
Sau3AI GATC 7 cut(s) 196, 223, 713, 880, 982, 1429, 1561
Sau96I GGNCC 1 cut(s) 1392
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 1358
SduI GDGCHC 2 cut(s) 357, 628
SfaNI GCATC 3 cut(s) 954, 1201, 1566
SfcI CTRYAG 2 cut(s) 100, 837
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 1 cut(s) 1392
SmiMI CAYNNNNRTG 4 cut(s) 216, 1113, 1149, 1209
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
SphI GCATGC 1 cut(s) 1208
SsiI CCGC 1 cut(s) 889
SspI AATATT 1 cut(s) 1161
SspMI CTAG 5 cut(s) 618, 701, 909, 1319, 1515
StyD4I CCNGG 1 cut(s) 1356
TaaI ACNGT 2 cut(s) 157, 649
TaiI ACGT 2 cut(s) 1238, 1423
TaqI TCGA 3 cut(s) 7, 832, 1366
TatI WGTACW 2 cut(s) 1257, 1296
TfiI GAWTC 5 cut(s) 275, 435, 916, 1363, 1625
Tru1I TTAA 3 cut(s) 141, 293, 1571
Tru9I TTAA 3 cut(s) 141, 293, 1571
TscAI CASTG 5 cut(s) 160, 379, 525, 654, 1571
TseI GCWGC 6 cut(s) 115, 342, 836, 839, 1178, 1484
TspRI CASTG 5 cut(s) 160, 379, 525, 654, 1571
VpaK11BI GGWCC 1 cut(s) 1392
XapI RAATTY 2 cut(s) 88, 1009
XbaI TCTAGA 2 cut(s) 1318, 1514
XceI RCATGY 1 cut(s) 1208
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 5 cut(s) 618, 701, 909, 1319, 1515
Zsp2I ATGCAT 2 cut(s) 407, 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.