Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Reverse (-)

34079741 .. 34080254

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTTGCGATTGTGCATGATCTTTTACATGGAAGCTTGAGGAGGAGTTTGAGACAACTAAGGTGGACTGAGAGGATGAAAGTTGCAATTGGTGTGGCGAAAGCTTTGGAGTACCTTCGTCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACGTTCTCCTCTCCCACGATTGCGAACCAATAATGAGTTCTAGAATAATACCACCTACATGCAGATGCCCCTTTGACGTTGTCGGAACGTTTGGATACTTAGCCCCGGAGTACATGACGTATGGCCAGGTTGATGAGAACATAGATGTGTACTCATATGGAGCGGTGCTTCTAGAACTCATTACTGGGAAAGAGGCTATTCAAACCGACCAGGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

6.28

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 125	6.4e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	9 - 121	1.3e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	1 cut(s)	329
AclI	AACGTT	2 cut(s)	168, 254
AcoI	YGGCCR	1 cut(s)	289
AfaI	GTAC	3 cut(s)	113, 278, 317
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	291, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	2 cut(s)	36, 104
AluI	AGCT	2 cut(s)	36, 104
Alw26I	GTCTC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	293, 377
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	207, 338
BfuI	GTATCC	1 cut(s)	254
Bme1390I	CCNGG	3 cut(s)	272, 293, 377
BmrFI	CCNGG	3 cut(s)	272, 293, 377
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	293, 377
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	81, 157
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	3 cut(s)	55, 58, 164
BshFI	GGCC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	293, 377
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	59, 69, 265
BstF5I	GGATG	2 cut(s)	81, 157
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	2 cut(s)	293, 377
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	3 cut(s)	270, 291, 375
BstV2I	GAAGAC	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	81, 157
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	112, 277, 316
CspCI	CAANNNNNGTGG	4 cut(s)	44, 75, 79, 110
CviAII	CATG	4 cut(s)	17, 29, 225, 280
CviJI	RGCY	5 cut(s)	36, 104, 269, 291, 362
CviKI_1	RGCY	5 cut(s)	36, 104, 269, 291, 362
CviQI	GTAC	3 cut(s)	112, 277, 316
DdeI	CTNAG	3 cut(s)	59, 69, 265
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	291, 375
FaeI	CATG	4 cut(s)	20, 32, 228, 283
FaiI	YATR	9 cut(s)	18, 30, 147, 226, 281, 288, 308, 322, 324
FatI	CATG	4 cut(s)	16, 28, 224, 279
FauNDI	CATATG	1 cut(s)	322
FokI	GGATG	2 cut(s)	88, 164
FspBI	CTAG	2 cut(s)	207, 338
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	4 cut(s)	20, 32, 228, 283
HindIII	AAGCTT	2 cut(s)	34, 102
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	66, 316
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	207, 338
Hpy8I	GTNNAC	2 cut(s)	66, 316
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	4 cut(s)	168, 243, 254, 284
HpyCH4V	TGCA	3 cut(s)	16, 86, 228
HpyF3I	CTNAG	3 cut(s)	59, 69, 265
HpySE526I	ACGT	4 cut(s)	168, 243, 254, 284
Hsp92II	CATG	4 cut(s)	20, 32, 228, 283
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	5 cut(s)	278, 285, 305, 336, 362
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	207, 338
MaeII	ACGT	4 cut(s)	168, 243, 254, 284
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	33, 36, 66, 144, 185, 352
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MslI	CAYNNNNRTG	4 cut(s)	150, 223, 229, 311
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	272, 293, 377
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	293, 377
NciI	CCSGG	1 cut(s)	272
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	4 cut(s)	20, 32, 228, 283
NspI	RCATGY	1 cut(s)	228
PflFI	GACNNNGTC	1 cut(s)	245
Psp1406I	AACGTT	2 cut(s)	168, 254
Psp6I	CCWGG	2 cut(s)	291, 375
PspGI	CCWGG	2 cut(s)	291, 375
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	113, 278, 317
RsaNI	GTAC	3 cut(s)	112, 277, 316
RseI	CAYNNNNRTG	4 cut(s)	150, 223, 229, 311
Sau3AI	GATC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	272, 293, 377
SfaNI	GCATC	1 cut(s)	221
SmiMI	CAYNNNNRTG	4 cut(s)	150, 223, 229, 311
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	207, 338
StyD4I	CCNGG	3 cut(s)	270, 291, 375
TaiI	ACGT	4 cut(s)	171, 246, 257, 287
TasI	AATT	1 cut(s)	87
TatI	WGTACW	2 cut(s)	276, 315
TspDTI	ATGAA	2 cut(s)	92, 134
Tth111I	GACNNNGTC	1 cut(s)	245
XbaI	TCTAGA	2 cut(s)	206, 337
XceI	RCATGY	1 cut(s)	228
XspI	CTAG	2 cut(s)	207, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.