Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Reverse (-)

31299907 .. 31300454

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013420

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTTGCGATCGTGCATGATCTTTTACATGGAAGCTTGAGGAGGAGTTTGAGACAACTACAGTGGACTGAGAGGATGAATGTTGCAATTGGTGTGGCGAAAACTTTGGATTGTCTGATTTTGGAGCAGCAATGGTACTTATCAACCTCAACATGCAAATGCCCCTTTGATGTTGTCAGAACATTTGGATACTTAGCCTCGAAGTACATGATGTATGACCAGGTTGATGAGAACATAGATGTGTACTCGTATGGAGCGGTGCTTCTAGAACTCATTACTGGGAAAGAGGCTATTCAAAACGACCAGGAGATTCGAGAAAGCTTAGTACTTAGGGTAATGGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

116

Amino Acids

13.37

Weight (kDa)

5.06

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	257
AciI	CCGC	1 cut(s)	257
AfaI	GTAC	4 cut(s)	137, 206, 245, 327
AgsI	TTSAA	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	219, 303
AluBI	AGCT	2 cut(s)	36, 321
AluI	AGCT	2 cut(s)	36, 321
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	221, 305
BciVI	GTATCC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	221, 305
BmrFI	CCNGG	2 cut(s)	221, 305
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	221, 305
BseGI	GGATG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	55, 58
BseXI	GCAGC	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	9, 19
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	9, 19
Bst2UI	CCWGG	2 cut(s)	221, 305
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	69, 193, 322, 329
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	2 cut(s)	12, 22
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	9, 19
BstMCI	CGRYCG	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	221, 305
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	219, 303
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	6
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	136, 205, 244, 326
CspCI	CAANNNNNGTGG	4 cut(s)	44, 75, 79, 110
CviAII	CATG	4 cut(s)	17, 29, 153, 208
CviJI	RGCY	4 cut(s)	36, 197, 290, 321
CviKI_1	RGCY	4 cut(s)	36, 197, 290, 321
CviQI	GTAC	4 cut(s)	136, 205, 244, 326
DdeI	CTNAG	4 cut(s)	69, 193, 322, 329
DpnI	GATC	2 cut(s)	11, 21
DpnII	GATC	2 cut(s)	9, 19
EcoRII	CCWGG	2 cut(s)	219, 303
FaeI	CATG	4 cut(s)	20, 32, 156, 211
FaiI	YATR	7 cut(s)	18, 30, 154, 209, 216, 236, 252
FatI	CATG	4 cut(s)	16, 28, 152, 207
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	20, 32, 156, 211
HindIII	AAGCTT	2 cut(s)	34, 319
HinfI	GANTC	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	66, 244
Hpy188I	TCNGA	2 cut(s)	117, 179
Hpy188III	TCNNGA	2 cut(s)	266, 314
Hpy8I	GTNNAC	2 cut(s)	66, 244
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	16, 86, 156
HpyF3I	CTNAG	4 cut(s)	69, 193, 322, 329
Hsp92II	CATG	4 cut(s)	20, 32, 156, 211
Kzo9I	GATC	2 cut(s)	9, 19
LmnI	GCTCC	2 cut(s)	124, 254
LpnPI	CCDG	5 cut(s)	206, 233, 264, 290, 317
Lsp1109I	GCAGC	1 cut(s)	139
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	266
MalI	GATC	2 cut(s)	11, 21
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	2 cut(s)	9, 19
MfeI	CAATTG	1 cut(s)	87
MluCI	AATT	1 cut(s)	87
MnlI	CCTC	6 cut(s)	33, 36, 66, 157, 208, 280
MslI	CAYNNNNRTG	2 cut(s)	157, 239
MspR9I	CCNGG	2 cut(s)	221, 305
MunI	CAATTG	1 cut(s)	87
MvaI	CCWGG	2 cut(s)	221, 305
NdeII	GATC	2 cut(s)	9, 19
NlaIII	CATG	4 cut(s)	20, 32, 156, 211
NspI	RCATGY	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	129
Ple19I	CGATCG	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	219, 303
PspGI	CCWGG	2 cut(s)	219, 303
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	4 cut(s)	137, 206, 245, 327
RsaNI	GTAC	4 cut(s)	136, 205, 244, 326
RseI	CAYNNNNRTG	2 cut(s)	157, 239
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	2 cut(s)	9, 19
ScaI	AGTACT	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	221, 305
SetI	ASST	4 cut(s)	38, 149, 225, 323
SexAI	ACCWGGT	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	157, 239
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	219, 303
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	200, 313
TasI	AATT	1 cut(s)	87
TatI	WGTACW	3 cut(s)	204, 243, 325
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	68
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.