Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

17279753 .. 17280791

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAATGTTAACTCCATCTTCCAGAAAACAACAATGAATTTTGGAACATCACTATGCCAAAGATTGAATATAAAGCATCTGGTTACCAGTACTCCTGTTTACAGCAGTGCTTCTGATGTCACAGGAGAAGGATTGAGTTTGATATTCAGGCGCTGGGCTAGTAAAAAAAATCTTGGATCCTCAAAGAATGGGCGAGACTCTTTACCTAAGAATCTTGGAGTGAAGAAATTCGGTGGAGAGAGGGTGATACCTGGAAACATCATTGTTCGCCAGAGGGGCACCCGATTCCATCCTGGAAATTATGTTGGGTTAGGGAAAGATCACACTCTTTTTGCTCTGAAAGAAGGCACCGTAAAGTTTGAAAAGCACAAGCTCACTGGACGTAAGTGGGTGCATGTAGAGCCCAAAGACGGTCATGTGCTTCACCCTATATACGCGAATGCTGCAGCAGCAGAGACGGTGAAGACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

157

Amino Acids

17.34

Weight (kDa)

10.32

Isoelectric Point (pI)

19.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	53 - 133	6.2e-36	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	278, 347
AccII	CGCG	1 cut(s)	437
AclWI	GGATC	2 cut(s)	171, 184
AcsI	RAATTY	2 cut(s)	37, 227
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	67, 362
AjnI	CCWGG	2 cut(s)	250, 292
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	189, 449
AlwI	GGATC	2 cut(s)	171, 184
AlwNI	CAGNNNCTG	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	443, 446, 449
ApoI	RAATTY	2 cut(s)	37, 227
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	256, 416, 472
BaeGI	GKGCMC	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	278, 347
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	430, 458, 461
BccI	CCATC	2 cut(s)	23, 297
BciT130I	CCWGG	2 cut(s)	252, 294
BcoDI	GTCTC	2 cut(s)	189, 449
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	3 cut(s)	444, 447, 450
BlsI	GCNGC	3 cut(s)	445, 448, 451
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	252, 294
BmiI	GGNNCC	3 cut(s)	178, 280, 349
BmrFI	CCNGG	2 cut(s)	252, 294
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	87, 382
BseBI	CCWGG	2 cut(s)	252, 294
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	87, 382
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	430, 458, 461
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	437
BshNI	GGYRCC	2 cut(s)	278, 347
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	189, 449
BsmBI	CGTCTC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	281, 405
Bsp143I	GATC	2 cut(s)	176, 319
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	178, 280, 349
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	2 cut(s)	171, 184
BspT107I	GGYRCC	2 cut(s)	278, 347
BsrI	ACTGG	2 cut(s)	87, 382
BssMI	GATC	2 cut(s)	176, 319
Bst2UI	CCWGG	2 cut(s)	252, 294
Bst4CI	ACNGT	4 cut(s)	352, 413, 460, 469
BstDEI	CTNAG	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	179, 322
BstMAI	GTCTC	2 cut(s)	189, 449
BstMBI	GATC	2 cut(s)	176, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 400, 443, 449
BstNI	CCWGG	2 cut(s)	252, 294
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	250, 292
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	430, 458, 461
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	112, 375
CaiI	CAGNNNCTG	1 cut(s)	153
CfoI	GCGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	395, 416
CviJI	RGCY	3 cut(s)	158, 373, 403
CviKI_1	RGCY	3 cut(s)	158, 373, 403
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	178, 321
DpnII	GATC	2 cut(s)	176, 319
Eco24I	GRGCYC	1 cut(s)	405
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	250, 292
EcoT38I	GRGCYC	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	2 cut(s)	398, 419
FaiI	YATR	7 cut(s)	55, 71, 303, 396, 417, 431, 433
FatI	CATG	2 cut(s)	394, 415
Fnu4HI	GCNGC	3 cut(s)	444, 447, 450
FokI	GGATG	1 cut(s)	276
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	3 cut(s)	444, 447, 450
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	3 cut(s)	444, 447, 450
GsaI	CCCAGC	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	154
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	398, 419
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	197, 211, 285
HpaI	GTTAAC	1 cut(s)	10
HphI	GGTGA	3 cut(s)	256, 416, 472
Hpy166II	GTNNAC	2 cut(s)	10, 100
Hpy188I	TCNGA	3 cut(s)	115, 339, 473
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	10, 100
HpyAV	CCTTC	2 cut(s)	122, 338
HpyCH4III	ACNGT	4 cut(s)	352, 413, 460, 469
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	394, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 400, 443, 449
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	398, 419
HspAI	GCGC	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	176, 319
Lsp1109I	GCAGC	3 cut(s)	430, 458, 461
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	82, 118
MalI	GATC	2 cut(s)	178, 321
MboI	GATC	2 cut(s)	176, 319
MboII	GAAGA	2 cut(s)	10, 235
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	281, 405
MluCI	AATT	3 cut(s)	37, 227, 298
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	3 cut(s)	190, 234, 267
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	252, 294
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	252, 294
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	4 cut(s)	276, 400, 443, 449
NdeII	GATC	2 cut(s)	176, 319
NlaIII	CATG	2 cut(s)	398, 419
NlaIV	GGNNCC	3 cut(s)	178, 280, 349
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	398
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	211, 285
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	445, 448, 451
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	250, 292
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	250, 292
PspN4I	GGNNCC	3 cut(s)	178, 280, 349
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	444, 447, 450
Sau3AI	GATC	2 cut(s)	176, 319
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	252, 294
SduI	GDGCHC	2 cut(s)	281, 405
SetI	ASST	4 cut(s)	208, 253, 375, 385
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	37, 227, 298
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	250, 292
TaaI	ACNGT	4 cut(s)	352, 413, 460, 469
TaiI	ACGT	1 cut(s)	385
TasI	AATT	3 cut(s)	37, 227, 298
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	211, 285
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	112, 382
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	3 cut(s)	443, 446, 449
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	17, 50
TspRI	CASTG	2 cut(s)	112, 382
XapI	RAATTY	2 cut(s)	37, 227
XceI	RCATGY	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.