Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004649.1

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Reverse (-)

72293 .. 74436

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004649.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

atgggtgctccagcaccaagtgccagtttgtatgagatggttcgaagtcatacaattgaaccccaaatgctatcgtgccggtgcaagacagtgaagaccaagaggacgattattgctggcctaaattcagatacttgcagtagagaaatgctgcttggattgctcacttctgttgttaaaccagaagacactgtgatagctattcatgttgaagaaacagatgatacatttgatccgaacactttccacattcatgaagatctctgcaagtccaagaaggtagatttccaaataaaggtctgcataggagattcatacatttctgaattaacttaccaagttagagtcagctatgctacaatccttgcacttggttgcagcccttcagggctcaatgtttcagctaccagtgcttgcctgaaaggtttacctccttcatgcatacttctggtaatgaatagtgttggaagaatcttatttcagagggagggaacttgccaacaaggttctgtaaatgtagccctgcccctgcaatcttctcagtcattttcttcagtgtacgcttgttataatcagtcaaacaccaaccggaaattgcacaagtcattgacaataccatctgctcctcctgtatcatcaattcggcgaattactagaagggcactctcttctgcacataaaacagtggaggtttccgattttgtggctcaaaagctgtttcatagattgggactactagaagcagaaggatccagcaggcattttgcctcccaagagcttcgctatgcaactaataatttcagctctgacatggtgattggagagggtggacatagcaaggtgtaccgagccactcttgaagatggtcgagctgcagctgtgaaagtcctcaaaaccacacaccattcagttagtgatcttttccgtgaagtagattttctatctagtatgaatcacaagaacattgttcagataattggtttctgtgatagtggagagatgcttgcgattgtgtatgatcttttacatggaagcttgaggaggaatttgagacaactaaggtggagtgagaggatgaaggttgcaattggtgtggcaaaagctttggagtaccttcatcattctcacaaccatcccatcattcatagggatgtcaagtcttctaacattctcctctcccatgattgtgaaccaatattgtccgattttggagcagcaatggtacttcgtcaatctcagcatgcagatgcgccatttgatgttgttgggacgtttggatacttagccccagagtacatgatgtatggcaaggttgatgagaagatagatgtgtactcatatggagtggtgcttctagaactcattactgggaaagaggctattcaaaccgaccaggagattcgagaaagcttagtactttgggcaaggtccctattgagctgtggcatatgcgaacgtcttattgatccttacttgtctgaggactacaacaaggaagagatggaagtaatgatggtagctgcacgcctctgccttatgcattcatcttctagaagaccaaccatgaaaacaatacttaggctgtttgaggagccagatcactggttaaggatgcagagagaaagagacgagtttctgaaagggacaaaatcaaaagatgattcagccctgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

558

Amino Acids

62.5

Weight (kDa)

7.07

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AclWI	GGATC	4 cut(s)	227, 744, 757, 1460
AcsI	RAATTY	2 cut(s)	124, 1045
AcuI	CTGAAG	2 cut(s)	369, 537
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	7 cut(s)	560, 845, 1112, 1224, 1295, 1334, 1416
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	4 cut(s)	59, 212, 860, 1385
AjnI	CCWGG	1 cut(s)	1392
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	1045, 1620
AlwI	GGATC	4 cut(s)	227, 744, 757, 1460
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	6 cut(s)	151, 378, 872, 875, 1214, 1520
ApoI	RAATTY	2 cut(s)	124, 1045
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	1252
AspS9I	GGNCC	1 cut(s)	1428
AsuHPI	GGTGA	1 cut(s)	826
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	1428
BaeGI	GKGCMC	1 cut(s)	664
BamHI	GGATCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	4 cut(s)	101, 192, 1152, 1561
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	6 cut(s)	138, 390, 859, 887, 1226, 1507
BccI	CCATC	7 cut(s)	31, 625, 857, 1140, 1145, 1495, 1507
BciT130I	CCWGG	1 cut(s)	1394
BciVI	GTATCC	1 cut(s)	1271
BcoDI	GTCTC	2 cut(s)	1045, 1620
BfaI	CTAG	5 cut(s)	654, 737, 945, 1355, 1551
BfmI	CTRYAG	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	1271
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	6 cut(s)	152, 379, 873, 876, 1215, 1521
BlsI	GCNGC	6 cut(s)	153, 380, 874, 877, 1216, 1522
BmcAI	AGTACT	1 cut(s)	1416
Bme1390I	CCNGG	1 cut(s)	1394
Bme18I	GGWCC	1 cut(s)	1428
BmgT120I	GGNCC	1 cut(s)	1428
BmiI	GGNNCC	3 cut(s)	751, 1430, 1593
BmrFI	CCNGG	1 cut(s)	1394
BmrI	ACTGGG	1 cut(s)	1377
BmsI	GCATC	3 cut(s)	990, 1237, 1602
BmuI	ACTGGG	1 cut(s)	1377
BpiI	GAAGAC	4 cut(s)	101, 192, 1152, 1561
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	1057
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	4 cut(s)	24, 408, 1372, 1607
Bse3DI	GCAATG	1 cut(s)	1224
BseBI	CCWGG	1 cut(s)	1394
BseGI	GGATG	4 cut(s)	1080, 1132, 1156, 1617
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	1224
BseMII	CTCAG	3 cut(s)	554, 1250, 1470
BseNI	ACTGG	4 cut(s)	24, 408, 1372, 1607
BseRI	GAGGAG	4 cut(s)	615, 1054, 1163, 1604
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	6 cut(s)	138, 390, 859, 887, 1226, 1507
BsgI	GTGCAG	2 cut(s)	657, 1506
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	79, 589
BslFI	GGGAC	4 cut(s)	744, 1282, 1414, 1657
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	1045, 1620
BsmBI	CGTCTC	1 cut(s)	1620
BsmFI	GGGAC	4 cut(s)	744, 1282, 1414, 1657
BsmI	GAATGC	1 cut(s)	1540
BsnI	GGCC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	3 cut(s)	10, 393, 664
Bsp143I	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	553, 1249, 1471
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	751, 1430, 1593
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	4 cut(s)	227, 744, 757, 1460
BspT104I	TTCGAA	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	1224
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	4 cut(s)	24, 408, 1372, 1607
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
Bst2UI	CCWGG	1 cut(s)	1394
Bst4CI	ACNGT	3 cut(s)	91, 193, 685
Bst6I	CTCTTC	2 cut(s)	673, 1491
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	6 cut(s)	118, 415, 758, 1005, 1242, 1525
BstDEI	CTNAG	7 cut(s)	540, 1058, 1236, 1282, 1411, 1479, 1577
BstF5I	GGATG	4 cut(s)	1080, 1132, 1156, 1617
BstHHI	GCGC	1 cut(s)	1252
BstKTI	GATC	7 cut(s)	235, 262, 752, 919, 1021, 1468, 1600
BstMAI	GTCTC	2 cut(s)	1045, 1620
BstMBI	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 160, 410
BstNI	CCWGG	1 cut(s)	1394
BstNSI	RCATGY	1 cut(s)	1244
BstSCI	CCNGG	1 cut(s)	1392
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	664
BstV1I	GCAGC	6 cut(s)	138, 390, 859, 887, 1226, 1507
BstV2I	GAAGAC	4 cut(s)	101, 192, 1152, 1561
BstX2I	RGATCY	2 cut(s)	259, 749
BstXI	CCANNNNNNTGG	1 cut(s)	1602
BstYI	RGATCY	2 cut(s)	259, 749
BsuI	GTATCC	1 cut(s)	1271
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	1080, 1132, 1156, 1617
BtsIMutI	CAGTG	6 cut(s)	96, 189, 415, 561, 690, 1600
Cac8I	GCNNGC	6 cut(s)	118, 415, 758, 1005, 1242, 1525
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	1252
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	1428
Csp6I	GTAC	7 cut(s)	559, 844, 1111, 1223, 1294, 1333, 1415
CspCI	CAANNNNNGTGG	4 cut(s)	1043, 1074, 1078, 1109
CviAII	CATG	9 cut(s)	206, 254, 438, 811, 1028, 1181, 1241, 1297, 1564
CviQI	GTAC	7 cut(s)	559, 844, 1111, 1223, 1294, 1333, 1415
DdeI	CTNAG	7 cut(s)	540, 1058, 1236, 1282, 1411, 1479, 1577
DpnI	GATC	7 cut(s)	234, 261, 751, 918, 1020, 1467, 1599
DpnII	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
DraIII	CACNNNGTG	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	673, 1491
EarI	CTCTTC	2 cut(s)	673, 1491
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	1428
Eco57I	CTGAAG	2 cut(s)	369, 537
EcoO109I	RGGNCCY	1 cut(s)	1428
EcoRII	CCWGG	1 cut(s)	1392
EcoT22I	ATGCAT	2 cut(s)	443, 1542
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	1620
FaeI	CATG	9 cut(s)	209, 257, 441, 814, 1031, 1184, 1244, 1300, 1567
FaqI	GGGAC	4 cut(s)	744, 1282, 1414, 1657
FatI	CATG	9 cut(s)	205, 253, 437, 810, 1027, 1180, 1240, 1296, 1563
FauNDI	CATATG	2 cut(s)	1339, 1448
Fnu4HI	GCNGC	6 cut(s)	152, 379, 873, 876, 1215, 1521
FokI	GGATG	4 cut(s)	1087, 1119, 1163, 1624
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	6 cut(s)	152, 379, 873, 876, 1215, 1521
FspBI	CTAG	5 cut(s)	654, 737, 945, 1355, 1551
GlaI	GCGC	1 cut(s)	1251
GluI	GCNGC	6 cut(s)	152, 379, 873, 876, 1215, 1521
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	79, 589
HhaI	GCGC	1 cut(s)	1252
Hin1II	CATG	9 cut(s)	209, 257, 441, 814, 1031, 1184, 1244, 1300, 1567
Hin6I	GCGC	1 cut(s)	1250
HinP1I	GCGC	1 cut(s)	1250
HindIII	AAGCTT	3 cut(s)	1033, 1101, 1408
HinfI	GANTC	6 cut(s)	311, 345, 471, 952, 1399, 1661
HpaII	CCGG	2 cut(s)	79, 589
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	6 cut(s)	428, 559, 830, 844, 1190, 1333
Hpy188III	TCNNGA	5 cut(s)	254, 857, 1355, 1403, 1551
Hpy8I	GTNNAC	6 cut(s)	428, 559, 830, 844, 1190, 1333
HpyAV	CCTTC	7 cut(s)	271, 393, 444, 651, 740, 1072, 1124
HpyCH4III	ACNGT	3 cut(s)	91, 193, 685
HpyCH4IV	ACGT	2 cut(s)	1271, 1456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 160, 410
HpyF3I	CTNAG	7 cut(s)	540, 1058, 1236, 1282, 1411, 1479, 1577
HpySE526I	ACGT	2 cut(s)	1271, 1456
Hsp92II	CATG	9 cut(s)	209, 257, 441, 814, 1031, 1184, 1244, 1300, 1567
HspAI	GCGC	1 cut(s)	1250
Kzo9I	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
LmnI	GCTCC	4 cut(s)	13, 628, 1211, 1591
Lsp1109I	GCAGC	6 cut(s)	138, 390, 859, 887, 1226, 1507
LweI	GCATC	3 cut(s)	990, 1237, 1602
MaeI	CTAG	5 cut(s)	654, 737, 945, 1355, 1551
MaeII	ACGT	2 cut(s)	1271, 1456
MalI	GATC	7 cut(s)	234, 261, 751, 918, 1020, 1467, 1599
MboI	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
MfeI	CAATTG	2 cut(s)	54, 1086
MflI	RGATCY	2 cut(s)	259, 749
MhlI	GDGCHC	3 cut(s)	10, 393, 664
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	445
Mph1103I	ATGCAT	2 cut(s)	443, 1542
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	3 cut(s)	177, 329, 1607
MslI	CAYNNNNRTG	4 cut(s)	252, 1149, 1185, 1245
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	79, 589
MspR9I	CCNGG	1 cut(s)	1394
MunI	CAATTG	2 cut(s)	54, 1086
Mva1269I	GAATGC	1 cut(s)	1540
MvaI	CCWGG	1 cut(s)	1394
MwoI	GCNNNNNNNGC	3 cut(s)	20, 160, 410
NdeI	CATATG	2 cut(s)	1339, 1448
NdeII	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
NlaIII	CATG	9 cut(s)	209, 257, 441, 814, 1031, 1184, 1244, 1300, 1567
NlaIV	GGNNCC	3 cut(s)	751, 1430, 1593
NsiI	ATGCAT	2 cut(s)	443, 1542
NspI	RCATGY	1 cut(s)	1244
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	1244
PagI	TCATGA	1 cut(s)	253
PctI	GAATGC	1 cut(s)	1540
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	5 cut(s)	311, 471, 952, 1399, 1661
PkrI	GCNGC	6 cut(s)	153, 380, 874, 877, 1216, 1522
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	1428
PsiI	TTATAA	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	1428
Psp6I	CCWGG	1 cut(s)	1392
PspGI	CCWGG	1 cut(s)	1392
PspN4I	GGNNCC	3 cut(s)	751, 1430, 1593
PspPI	GGNCC	1 cut(s)	1428
PspPPI	RGGWCCY	1 cut(s)	1428
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	259, 749
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	7 cut(s)	560, 845, 1112, 1224, 1295, 1334, 1416
RsaNI	GTAC	7 cut(s)	559, 844, 1111, 1223, 1294, 1333, 1415
RseI	CAYNNNNRTG	4 cut(s)	252, 1149, 1185, 1245
SaqAI	TTAA	3 cut(s)	177, 329, 1607
SatI	GCNGC	6 cut(s)	152, 379, 873, 876, 1215, 1521
Sau3AI	GATC	7 cut(s)	232, 259, 749, 916, 1018, 1465, 1597
Sau96I	GGNCC	1 cut(s)	1428
ScaI	AGTACT	1 cut(s)	1416
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	1394
SduI	GDGCHC	3 cut(s)	10, 393, 664
SfaNI	GCATC	3 cut(s)	990, 1237, 1602
SfcI	CTRYAG	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	1428
SmiMI	CAYNNNNRTG	4 cut(s)	252, 1149, 1185, 1245
SmlI	CTYRAG	1 cut(s)	1036
SmoI	CTYRAG	1 cut(s)	1036
SphI	GCATGC	1 cut(s)	1244
SspI	AATATT	1 cut(s)	1197
SspMI	CTAG	5 cut(s)	654, 737, 945, 1355, 1551
StyD4I	CCNGG	1 cut(s)	1392
TaaI	ACNGT	3 cut(s)	91, 193, 685
TaiI	ACGT	2 cut(s)	1274, 1459
TaqI	TCGA	3 cut(s)	43, 868, 1402
TatI	WGTACW	3 cut(s)	1293, 1332, 1414
TfiI	GAWTC	5 cut(s)	311, 471, 952, 1399, 1661
Tru1I	TTAA	3 cut(s)	177, 329, 1607
Tru9I	TTAA	3 cut(s)	177, 329, 1607
TscAI	CASTG	6 cut(s)	96, 196, 415, 561, 690, 1607
TseI	GCWGC	6 cut(s)	151, 378, 872, 875, 1214, 1520
TspGWI	ACGGA	1 cut(s)	914
TspRI	CASTG	6 cut(s)	96, 196, 415, 561, 690, 1607
VpaK11BI	GGWCC	1 cut(s)	1428
XapI	RAATTY	2 cut(s)	124, 1045
XbaI	TCTAGA	2 cut(s)	1354, 1550
XceI	RCATGY	1 cut(s)	1244
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	5 cut(s)	654, 737, 945, 1355, 1551
ZrmI	AGTACT	1 cut(s)	1416
Zsp2I	ATGCAT	2 cut(s)	443, 1542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.