Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

40300184 .. 40300477

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG213400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAGGATGACCACTACTACATGGTGCTCGTCTTCTCACCTGATATAGCCGGATTTACTAGCACCATTCCAACTATTTCGAGGATGCGTTCGGGGCTGTCAATCTGTGAGGTTGATGGTCGTTTTGTTTTGCAATTTGACAGAGTGGCATATCAGAATTGTATCCTACATGGAGGATTATGGTTCCAGGAAAACAGGATGGTAATCCTCGCGAAGTATGACGGCTTAGCACTGGGGGACTCAATCCTCTTGAAACCTGGTCACTGTAAAGGGGCTACCAACTGGTTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.93

Weight (kDa)

6.23

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	186, 256
Alw21I	GWGCWC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	2 cut(s)	110, 193
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	188, 258
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	173
BlpI	GCTNAGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	188, 258
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	188, 258
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	25
Bpu1102I	GCTNAGC	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	237, 287
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	188, 258
BseGI	GGATG	3 cut(s)	13, 90, 204
BseJI	GATNNNNATC	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	237, 287
Bsh1236I	CGCG	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	226
Bsp68I	TCGCGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	237, 287
Bst2UI	CCWGG	2 cut(s)	188, 258
Bst4CI	ACNGT	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	13, 90, 204
BstFNI	CGCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	2 cut(s)	188, 258
BstSCI	CCNGG	2 cut(s)	186, 256
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	13, 90, 204
BtsIMutI	CAGTG	2 cut(s)	230, 262
BtuMI	TCGCGA	1 cut(s)	212
CsiI	ACCWGGT	1 cut(s)	256
CviAII	CATG	2 cut(s)	22, 170
CviJI	RGCY	4 cut(s)	50, 97, 225, 275
CviKI_1	RGCY	4 cut(s)	50, 97, 225, 275
DdeI	CTNAG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	186, 256
FaeI	CATG	2 cut(s)	25, 173
FaiI	YATR	6 cut(s)	23, 47, 151, 171, 181, 219
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	2 cut(s)	21, 169
FokI	GGATG	3 cut(s)	20, 97, 211
FspBI	CTAG	1 cut(s)	60
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	25, 173
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	211, 250
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	4, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	25, 173
LpnPI	CCDG	9 cut(s)	54, 64, 173, 181, 200, 218, 243, 268, 270
LweI	GCATC	1 cut(s)	75
MabI	ACCWGGT	1 cut(s)	256
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	134, 157
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	5 cut(s)	75, 103, 167, 218, 257
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	188, 258
MvaI	CCWGG	2 cut(s)	188, 258
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	25, 173
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	260
NruI	TCGCGA	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	186
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	186, 256
PspGI	CCWGG	2 cut(s)	186, 256
PspN4I	GGNNCC	1 cut(s)	185
RruI	TCGCGA	1 cut(s)	212
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	188, 258
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	3 cut(s)	43, 114, 259
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	75
Sse9I	AATT	2 cut(s)	134, 157
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	186, 256
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	134, 157
TscAI	CASTG	2 cut(s)	237, 269
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspRI	CASTG	2 cut(s)	237, 269
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.