Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005899

Physical Location & Seq

Genomic Coordinates Forward (+)

40740435 .. 40743436

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAATAGTGTTGGAAGAATCTTATTTCAGAGGGAGGGAACTTGCCAACAAGGTTCTGTAAAGGTAGCCCTGCCCCTGCAATCTTCTCAGTCATTTTCTTCAGTGTACGCTTGTTATAATCAGTCAAACGCTAACCGGAAATTGCACAAGTCATTGACAATACCATCTGCTCCTCCCGTATCATCAATTCGGCGAATTACTAGAAGGGCACTCTCTTCTGCACATAAAACAGTGGAGGTTTCCGATTTTGTGGCTCAAAAGCTGTTTCATAGATTGGGACTACTAGAAGCAGAAGGATCCAGCAGGCATTTCGCCTCCCAAGAGCTTCGCTATGCAACTAATAATTTCAGCTCTGACATGGTGATTGGAGAGGGTGGACATAGCAAGGTGTACCGAGCCACTCTTGAAGATGGTCGAGCTGCAGCTGTGAAAGTCCTCAAAACCACACACCATTCAGTTAGTGATCTTTTCCGCGAAGTAGATTTTCTATCTAGTATGAATCACAAGAACATTGTTCAGATAATTGGGTTCTGTGATAGTGGAGAGATGCTTGCGATTGTGTATGATCTTTTACATGGAAGCTTGAGGAGGAATTTGAGACAACTAAGGTGGAGTGAGAGGATGAAGGTTGCAATTGGTGTGGCAAAAGCTTTGGAGTACCTTCATCATTCTCACAACCCTCCCATCATTCATAGGGATGTCAAGTCTTCTAACATTCTCCTCTCCCATGATTGTGAACCAATATTGTCCGATTTTGGAGCAGCAATGGTACTTCGTCAATCTCAGCATGCAGATGCGCCATTTGATGTTGTTGGGACGTTTGGATACTTAGCCCCAGAGTACATGATGTATGGCAAGGTTGATGAGAAGATAGATGTGTACTCATATGGAGTGGTGCTTCTAGAACTCATTACTGGGAAAGAGGCTATTCAAACCGACCAGGAGATTCGAGAAAGCTTAGTACTTTGGGCAAGGTCCCTATTGAGCTGTGGCATATGTGAACGTCTTATTGATCCTTACTTGTCTGAGGACTACAACAAGGAAGAGATGGAAGTAATGATGGTAGCTGCACGCCTCTGCCTTATGCATTCATCTTCTAGAAGACCAACCATGAAAACAATACTTAGGCTGTTTGAGGAGCCAGATCACTGGTTAAGGATGCAGAGAGAAAGAGACGAGTTTCTGAAAGGGACAAAATCAAAAGATGATTCAGCCCTGTTTGGACCTGAAAGCTCAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

414

Amino Acids

46.77

Weight (kDa)

7.7

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	118 - 375	5.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	120 - 376	5.5e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005899)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15960 FvH4_2g15960 FvH4_2g15960
malus_domestica	MD05G1128600.v1.1
prunus_persica	Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1 Prupe.8G172700_v2.0.a1
pyrus_communis	pycom05g12450
rosa_chinensis	RchiOBHm_Chr6g0279501
rosa_laevigata	RLG00000013142 RLG00000013420
rosa_multiflora	Rmu_sc0004649.1_g000022 Rmu_sc0009253.1_g000001 Rmu_sc0027163.1_g000002
rosa_roxburghii	Rroxscaffold_7G00188870 Rroxscaffold_7G00192750
rosa_rugosa	Rorug06G0097700 Rorug06G0124800 Rorug06G0124900 Rorug06G0125000
rosa_samantha	Rh6AG209200 Rh6AG234000 Rh6BG213400 Rh6BG238200 Rh6CG216200 Rh6CG240300 Rh6DG231900
rosa_wichuraiana	Rw6G020410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AccII	CGCG	1 cut(s)	474
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	3 cut(s)	291, 304, 1007
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	7 cut(s)	107, 392, 659, 771, 842, 881, 963
AgsI	TTSAA	2 cut(s)	407, 932
AjnI	CCWGG	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	592, 1167
AlwI	GGATC	3 cut(s)	291, 304, 1007
ApeKI	GCWGC	4 cut(s)	419, 422, 761, 1067
ApoI	RAATTY	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	799
AspS9I	GGNCC	2 cut(s)	975, 1223
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	975, 1223
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	699, 1108
BbvI	GCAGC	4 cut(s)	406, 434, 773, 1054
BccI	CCATC	5 cut(s)	172, 404, 692, 1042, 1054
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	941
BciVI	GTATCC	1 cut(s)	818
BcoDI	GTCTC	2 cut(s)	592, 1167
BfaI	CTAG	5 cut(s)	201, 284, 492, 902, 1098
BfmI	CTRYAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	4 cut(s)	420, 423, 762, 1068
BlsI	GCNGC	4 cut(s)	421, 424, 763, 1069
BmcAI	AGTACT	1 cut(s)	963
Bme1390I	CCNGG	1 cut(s)	941
Bme18I	GGWCC	2 cut(s)	975, 1223
BmgT120I	GGNCC	2 cut(s)	975, 1223
BmiI	GGNNCC	3 cut(s)	298, 977, 1140
BmrFI	CCNGG	1 cut(s)	941
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	3 cut(s)	537, 784, 1149
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	2 cut(s)	699, 1108
BpuEI	CTTGAG	1 cut(s)	604
BsaWI	WCCGGW	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	919, 1154
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	1 cut(s)	941
BseGI	GGATG	3 cut(s)	627, 703, 1164
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	3 cut(s)	101, 797, 1017
BseNI	ACTGG	2 cut(s)	919, 1154
BseRI	GAGGAG	4 cut(s)	162, 601, 710, 1151
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	4 cut(s)	406, 434, 773, 1054
BsgI	GTGCAG	2 cut(s)	204, 1053
Bsh1236I	CGCG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	4 cut(s)	291, 829, 961, 1204
BsmAI	GTCTC	2 cut(s)	592, 1167
BsmBI	CGTCTC	1 cut(s)	1167
BsmFI	GGGAC	4 cut(s)	291, 829, 961, 1204
BsmI	GAATGC	1 cut(s)	1087
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	5 cut(s)	296, 463, 565, 1012, 1144
BspACI	CCGC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	100, 796, 1018
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	298, 977, 1140
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	3 cut(s)	291, 304, 1007
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	919, 1154
BssMI	GATC	5 cut(s)	296, 463, 565, 1012, 1144
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	220, 1038
BstC8I	GCNNGC	4 cut(s)	305, 552, 789, 1072
BstDEI	CTNAG	7 cut(s)	87, 605, 783, 829, 958, 1026, 1124
BstF5I	GGATG	3 cut(s)	627, 703, 1164
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	5 cut(s)	299, 466, 568, 1015, 1147
BstMAI	GTCTC	2 cut(s)	592, 1167
BstMBI	GATC	5 cut(s)	296, 463, 565, 1012, 1144
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	939
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	406, 434, 773, 1054
BstV2I	GAAGAC	2 cut(s)	699, 1108
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	1149
BstYI	RGATCY	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	818
BtsCI	GGATG	3 cut(s)	627, 703, 1164
BtsIMutI	CAGTG	3 cut(s)	108, 237, 1147
Cac8I	GCNNGC	4 cut(s)	305, 552, 789, 1072
CfoI	GCGC	1 cut(s)	799
Cfr13I	GGNCC	2 cut(s)	975, 1223
Csp6I	GTAC	7 cut(s)	106, 391, 658, 770, 841, 880, 962
CspCI	CAANNNNNGTGG	4 cut(s)	590, 621, 625, 656
CviAII	CATG	6 cut(s)	358, 575, 728, 788, 844, 1111
CviQI	GTAC	7 cut(s)	106, 391, 658, 770, 841, 880, 962
DdeI	CTNAG	7 cut(s)	87, 605, 783, 829, 958, 1026, 1124
DpnI	GATC	5 cut(s)	298, 465, 567, 1014, 1146
DpnII	GATC	5 cut(s)	296, 463, 565, 1012, 1144
Eam1104I	CTCTTC	2 cut(s)	220, 1038
EarI	CTCTTC	2 cut(s)	220, 1038
Eco47I	GGWCC	2 cut(s)	975, 1223
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRII	CCWGG	1 cut(s)	939
EcoT22I	ATGCAT	1 cut(s)	1089
Esp3I	CGTCTC	1 cut(s)	1167
FaeI	CATG	6 cut(s)	361, 578, 731, 791, 847, 1114
FaqI	GGGAC	4 cut(s)	291, 829, 961, 1204
FatI	CATG	6 cut(s)	357, 574, 727, 787, 843, 1110
FauNDI	CATATG	2 cut(s)	886, 995
Fnu4HI	GCNGC	4 cut(s)	420, 423, 762, 1068
FokI	GGATG	3 cut(s)	634, 710, 1171
Fsp4HI	GCNGC	4 cut(s)	420, 423, 762, 1068
FspBI	CTAG	5 cut(s)	201, 284, 492, 902, 1098
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	4 cut(s)	420, 423, 762, 1068
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	1 cut(s)	799
Hin1II	CATG	6 cut(s)	361, 578, 731, 791, 847, 1114
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HindIII	AAGCTT	3 cut(s)	580, 648, 955
HinfI	GANTC	4 cut(s)	18, 499, 946, 1208
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	6 cut(s)	106, 377, 391, 737, 880, 1001
Hpy188I	TCNGA	7 cut(s)	30, 244, 355, 519, 751, 1027, 1185
Hpy188III	TCNNGA	4 cut(s)	404, 902, 950, 1098
Hpy8I	GTNNAC	6 cut(s)	106, 377, 391, 737, 880, 1001
HpyAV	CCTTC	4 cut(s)	198, 287, 619, 671
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	818, 1003
HpyF3I	CTNAG	7 cut(s)	87, 605, 783, 829, 958, 1026, 1124
HpySE526I	ACGT	2 cut(s)	818, 1003
Hsp92II	CATG	6 cut(s)	361, 578, 731, 791, 847, 1114
HspAI	GCGC	1 cut(s)	797
Kzo9I	GATC	5 cut(s)	296, 463, 565, 1012, 1144
LmnI	GCTCC	3 cut(s)	175, 758, 1138
Lsp1109I	GCAGC	4 cut(s)	406, 434, 773, 1054
LweI	GCATC	3 cut(s)	537, 784, 1149
MaeI	CTAG	5 cut(s)	201, 284, 492, 902, 1098
MaeII	ACGT	2 cut(s)	818, 1003
MalI	GATC	5 cut(s)	298, 465, 567, 1014, 1146
MboI	GATC	5 cut(s)	296, 463, 565, 1012, 1144
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	8 cut(s)	140, 186, 195, 343, 522, 592, 633, 1236
Mph1103I	ATGCAT	1 cut(s)	1089
MseI	TTAA	1 cut(s)	1154
MslI	CAYNNNNRTG	3 cut(s)	696, 732, 792
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	941
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	1 cut(s)	941
MvnI	CGCG	1 cut(s)	474
NdeI	CATATG	2 cut(s)	886, 995
NdeII	GATC	5 cut(s)	296, 463, 565, 1012, 1144
NlaIII	CATG	6 cut(s)	361, 578, 731, 791, 847, 1114
NlaIV	GGNNCC	3 cut(s)	298, 977, 1140
NsiI	ATGCAT	1 cut(s)	1089
NspI	RCATGY	1 cut(s)	791
PaeI	GCATGC	1 cut(s)	791
PctI	GAATGC	1 cut(s)	1087
PfeI	GAWTC	4 cut(s)	18, 499, 946, 1208
PkrI	GCNGC	4 cut(s)	421, 424, 763, 1069
PpuMI	RGGWCCY	1 cut(s)	975
PsiI	TTATAA	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	939
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	3 cut(s)	298, 977, 1140
PspPI	GGNCC	2 cut(s)	975, 1223
PspPPI	RGGWCCY	1 cut(s)	975
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	7 cut(s)	107, 392, 659, 771, 842, 881, 963
RsaNI	GTAC	7 cut(s)	106, 391, 658, 770, 841, 880, 962
RseI	CAYNNNNRTG	3 cut(s)	696, 732, 792
SaqAI	TTAA	1 cut(s)	1154
SatI	GCNGC	4 cut(s)	420, 423, 762, 1068
Sau3AI	GATC	5 cut(s)	296, 463, 565, 1012, 1144
Sau96I	GGNCC	2 cut(s)	975, 1223
ScaI	AGTACT	1 cut(s)	963
ScrFI	CCNGG	1 cut(s)	941
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	537, 784, 1149
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	975, 1223
SmiMI	CAYNNNNRTG	3 cut(s)	696, 732, 792
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	8 cut(s)	140, 186, 195, 343, 522, 592, 633, 1236
SsiI	CCGC	1 cut(s)	472
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	5 cut(s)	201, 284, 492, 902, 1098
StyD4I	CCNGG	1 cut(s)	939
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	2 cut(s)	821, 1006
TaqI	TCGA	2 cut(s)	415, 949
TasI	AATT	8 cut(s)	140, 186, 195, 343, 522, 592, 633, 1236
TatI	WGTACW	3 cut(s)	840, 879, 961
TfiI	GAWTC	4 cut(s)	18, 499, 946, 1208
Tru1I	TTAA	1 cut(s)	1154
Tru9I	TTAA	1 cut(s)	1154
TscAI	CASTG	3 cut(s)	108, 237, 1154
TseI	GCWGC	4 cut(s)	419, 422, 761, 1067
TspDTI	ATGAA	8 cut(s)	17, 257, 512, 638, 653, 680, 1080, 1127
TspRI	CASTG	3 cut(s)	108, 237, 1154
VpaK11BI	GGWCC	2 cut(s)	975, 1223
XapI	RAATTY	1 cut(s)	592
XbaI	TCTAGA	2 cut(s)	901, 1097
XceI	RCATGY	1 cut(s)	791
XspI	CTAG	5 cut(s)	201, 284, 492, 902, 1098
ZrmI	AGTACT	1 cut(s)	963
Zsp2I	ATGCAT	1 cut(s)	1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.