Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Forward (+)

17934217 .. 17935114

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21561.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGGGGAAAAGAGAGGACAACCAGAACCAGGCGAGAGTAAGAGATCCAACTCGGTATAGAGGAACTCGGAGGAGGCCATGGGGCAGATATGCAGCAGAAATTCGGGATCCTACGAGAAACGGGGCACGTCTATGGTTAGGTACGTTTGACACTGCCGAACAGGCAGCAAGGGCTTATGATCGTGCTGCTTTTCGTTTGCGAGGGAATCTAGCTATCCTCAACTTCCCGAATGAGTACCATTACCATATGCATAACTCATCAACAAGCTCTTCCGTCACGTCAAATTGCAGTTCTTCATCATCAGCTGCCATTTCTTCTGCTGCTGCTGATGACACTGGGAATAAGCCTTTCTGCAAACAAGAAAGTGAAGTTATTGTGTTCGAGTATTTGGACAATATGATCTTGGAGGAGCTTCTTGCAACTAAAGAAGATACACGAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

6.84

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 70	1.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	41, 104, 117
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	2 cut(s)	145, 239
AfiI	CCNNNNNNNGG	1 cut(s)	31
AjiI	CACGTC	2 cut(s)	131, 282
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	4 cut(s)	215, 270, 308, 415
AluI	AGCT	4 cut(s)	215, 270, 308, 415
AlwI	GGATC	3 cut(s)	41, 104, 117
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	6 cut(s)	95, 167, 188, 308, 323, 326
ApoI	RAATTY	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	438
BbvI	GCAGC	6 cut(s)	107, 175, 179, 295, 310, 313
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	212
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	6 cut(s)	96, 168, 189, 309, 324, 327
BlsI	GCNGC	6 cut(s)	97, 169, 190, 310, 325, 328
Bme1390I	CCNGG	1 cut(s)	32
BmgBI	CACGTC	2 cut(s)	131, 282
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	2 cut(s)	88, 425
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	6 cut(s)	107, 175, 179, 295, 310, 313
BshFI	GGCC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	31
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	46, 109, 181, 402
Bsp19I	CCATGG	1 cut(s)	80
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	3 cut(s)	41, 104, 117
BspQI	GCTCTTC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	46, 109, 181, 402
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	80
BstKTI	GATC	4 cut(s)	49, 112, 184, 405
BstMBI	GATC	4 cut(s)	46, 109, 181, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 173
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	6 cut(s)	107, 175, 179, 295, 310, 313
BstX2I	RGATCY	2 cut(s)	46, 109
BstYI	RGATCY	2 cut(s)	46, 109
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	80
BtrI	CACGTC	2 cut(s)	131, 282
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 336
Csp6I	GTAC	2 cut(s)	144, 238
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	7 cut(s)	79, 176, 215, 270, 308, 349, 415
CviKI_1	RGCY	7 cut(s)	79, 176, 215, 270, 308, 349, 415
CviQI	GTAC	2 cut(s)	144, 238
DpnI	GATC	4 cut(s)	48, 111, 183, 404
DpnII	GATC	4 cut(s)	46, 109, 181, 402
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	1 cut(s)	84
FaiI	YATR	9 cut(s)	60, 82, 93, 136, 180, 249, 251, 255, 401
FatI	CATG	1 cut(s)	80
FauNDI	CATATG	1 cut(s)	249
Fnu4HI	GCNGC	6 cut(s)	96, 168, 189, 309, 324, 327
Fsp4HI	GCNGC	6 cut(s)	96, 168, 189, 309, 324, 327
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	6 cut(s)	96, 168, 189, 309, 324, 327
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	84
HinfI	GANTC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	107, 229
HpyCH4IV	ACGT	3 cut(s)	130, 146, 281
HpyCH4V	TGCA	5 cut(s)	95, 253, 291, 357, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 173
HpySE526I	ACGT	3 cut(s)	130, 146, 281
Hsp92II	CATG	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	46, 109, 181, 402
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	5 cut(s)	17, 38, 44, 149, 324
Lsp1109I	GCAGC	6 cut(s)	107, 175, 179, 295, 310, 313
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	3 cut(s)	130, 146, 281
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	48, 111, 183, 404
MboI	GATC	4 cut(s)	46, 109, 181, 402
MboII	GAAGA	4 cut(s)	264, 288, 309, 443
MflI	RGATCY	2 cut(s)	46, 109
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	102, 286, 445
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	10, 56, 66, 69, 197, 230, 403
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	164, 173
NcoI	CCATGG	1 cut(s)	80
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	46, 109, 181, 402
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	6 cut(s)	97, 169, 190, 310, 325, 328
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	111
PsuI	RGATCY	2 cut(s)	46, 109
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	2 cut(s)	145, 239
RsaNI	GTAC	2 cut(s)	144, 238
RseI	CAYNNNNRTG	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	6 cut(s)	96, 168, 189, 309, 324, 327
Sau3AI	GATC	4 cut(s)	46, 109, 181, 402
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	8 cut(s)	133, 145, 149, 217, 272, 284, 310, 417
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	3 cut(s)	102, 286, 445
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	80
TaiI	ACGT	3 cut(s)	133, 149, 284
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	102, 286, 445
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	2 cut(s)	160, 343
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	6 cut(s)	95, 167, 188, 308, 323, 326
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	160, 343
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.