Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028578.1

Orthogroup ID

OG0002859

Physical Location & Seq

Genomic Coordinates Reverse (-)

551 .. 1036

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028578.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgcatgtcacaacccatattttgcctccaaatttgaactcaaatagatcaaacccggccacttcaattatggaggggaaaagagaacagagcaagccgaaggtaagggatcaaatccggtatagaggcatccggaggcggccttggggaaagtatgcagcagaaattcgggaccctacaagaaacggggtacgtcgttggttaggtacatttgacacagctgaacaggcagcaagggcttatgatcgagctgcttttggtttccggggtcgtttagccatcctcaacttcccaaatgagagtcaataccacaattcatcaacaagctcttttgtcacatcaacttcgccaccctcgtcgtcttccttttcatctgctgctgctaatattgaaaaaaactttggaaacgaagaaagtggagttatagagtttgagtatttagacaatatgatcttggaggagcttcttgcaacacaagaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

161

Amino Acids

18.17

Weight (kDa)

9.39

Isoelectric Point (pI)

76.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21560 FvH4_2g21561
malus_domestica	MD05G1198800.v1.1 MD10G1185000.v1.1
prunus_persica	Prupe.8G224700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0288241 RchiOBHm_Chr6g0288251 RchiOBHm_Chr6g0288261
rosa_laevigata	RLG00000012420 RLG00000012421 RLG00000012422 RLG00000017373 RLG00000017374
rosa_multiflora	Rmu_co8125528.1_g000001 Rmu_co8198010.1_g000001 Rmu_co8388259.1_g000001 Rmu_sc0001038.1_g000001 Rmu_sc0004300.1_g000010 Rmu_sc0028578.1_g000001 Rmu_sc0028578.1_g000002 Rmu_sc0042461.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180280 Rroxscaffold_7G00180290 Rroxscaffold_7G00180310
rosa_rugosa	Rorug06G0195000 Rorug06G0195100 Rorug06G0195200
rosa_samantha	Rh6AG306000 Rh6AG306100 Rh6AG306200 Rh6BG311600 Rh6BG311700 Rh6BG311800 Rh6CG319600 Rh6CG319700 Rh6DG304900 Rh6DG305000
rosa_wichuraiana	Rw6G026460 Rw6G026470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	132
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	31, 165
AfaI	GTAC	2 cut(s)	192, 208
AgsI	TTSAA	3 cut(s)	37, 66, 392
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	221, 251, 327, 463
AluI	AGCT	4 cut(s)	221, 251, 327, 463
AlwI	GGATC	1 cut(s)	117
Aor13HI	TCCGGA	1 cut(s)	132
AoxI	GGCC	2 cut(s)	57, 140
ApeKI	GCWGC	5 cut(s)	158, 230, 251, 377, 380
ApoI	RAATTY	2 cut(s)	31, 165
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	2 cut(s)	56, 266
AvaII	GGWCC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	170, 238, 242, 364, 367
BccI	CCATC	1 cut(s)	287
BcnI	CCSGG	2 cut(s)	56, 266
BisI	GCNGC	6 cut(s)	140, 159, 231, 252, 378, 381
BlsI	GCNGC	6 cut(s)	141, 160, 232, 253, 379, 382
Bme1390I	CCNGG	2 cut(s)	56, 266
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	173, 174
BmrFI	CCNGG	2 cut(s)	56, 266
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	56, 266
BsaJI	CCNNGG	2 cut(s)	143, 265
BsaWI	WCCGGW	2 cut(s)	117, 132
BseAI	TCCGGA	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	143, 265
BseGI	GGATG	2 cut(s)	129, 279
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	5 cut(s)	170, 238, 242, 364, 367
BshFI	GGCC	2 cut(s)	59, 142
BsiSI	CCGG	4 cut(s)	56, 118, 133, 265
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	59, 142
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	47, 109, 244, 450
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	59, 142
BspEI	TCCGGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	173, 174
BspPI	GGATC	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	143, 265
BssMI	GATC	4 cut(s)	47, 109, 244, 450
BssT1I	CCWWGG	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	129, 279
BstKTI	GATC	4 cut(s)	50, 112, 247, 453
BstMBI	GATC	4 cut(s)	47, 109, 244, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 236
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	54, 264
BstV1I	GCAGC	5 cut(s)	170, 238, 242, 364, 367
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	59, 142
BtsCI	GGATG	2 cut(s)	129, 279
Cac8I	GCNNGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	191, 207
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	9 cut(s)	59, 97, 142, 221, 239, 251, 278, 327, 463
CviKI_1	RGCY	9 cut(s)	59, 97, 142, 221, 239, 251, 278, 327, 463
CviQI	GTAC	2 cut(s)	191, 207
DpnI	GATC	4 cut(s)	49, 111, 246, 452
DpnII	GATC	4 cut(s)	47, 109, 244, 450
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	8
FaiI	YATR	8 cut(s)	6, 18, 71, 123, 156, 243, 425, 449
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	4
Fnu4HI	GCNGC	6 cut(s)	140, 159, 231, 252, 378, 381
FokI	GGATG	2 cut(s)	116, 266
Fsp4HI	GCNGC	6 cut(s)	140, 159, 231, 252, 378, 381
GluI	GCNGC	6 cut(s)	140, 159, 231, 252, 378, 381
HaeIII	GGCC	2 cut(s)	59, 142
HapII	CCGG	4 cut(s)	56, 118, 133, 265
Hin1II	CATG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	4 cut(s)	56, 118, 133, 265
Hpy188III	TCNNGA	2 cut(s)	133, 170
Hpy99I	CGWCG	2 cut(s)	198, 361
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	4, 158, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 236
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	8
KflI	GGGWCCC	1 cut(s)	172
Kpn2I	TCCGGA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	47, 109, 244, 450
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	5 cut(s)	69, 131, 146, 212, 278
Lsp1109I	GCAGC	5 cut(s)	170, 238, 242, 364, 367
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	7, 334
MalI	GATC	4 cut(s)	49, 111, 246, 452
MboI	GATC	4 cut(s)	47, 109, 244, 450
MboII	GAAGA	2 cut(s)	354, 422
MluCI	AATT	4 cut(s)	31, 66, 165, 313
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	36, 67, 119, 129, 293, 364, 451
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	132
MseI	TTAA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	4 cut(s)	56, 118, 133, 265
MspR9I	CCNGG	2 cut(s)	56, 266
MwoI	GCNNNNNNNGC	2 cut(s)	227, 236
NciI	CCSGG	2 cut(s)	56, 266
NdeII	GATC	4 cut(s)	47, 109, 244, 450
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	173, 174
NmuCI	GTSAC	2 cut(s)	7, 334
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PkrI	GCNGC	6 cut(s)	141, 160, 232, 253, 379, 382
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	173, 174
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	192, 208
RsaNI	GTAC	2 cut(s)	191, 207
SaqAI	TTAA	1 cut(s)	484
SatI	GCNGC	6 cut(s)	140, 159, 231, 252, 378, 381
Sau3AI	GATC	4 cut(s)	47, 109, 244, 450
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	56, 266
SetI	ASST	7 cut(s)	105, 196, 208, 223, 253, 329, 465
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	4 cut(s)	31, 66, 165, 313
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	54, 264
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	31, 66, 165, 313
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	484
Tru9I	TTAA	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	7, 334
TseI	GCWGC	5 cut(s)	158, 230, 251, 377, 380
Tsp45I	GTSAC	2 cut(s)	7, 334
TspDTI	ATGAA	2 cut(s)	306, 360
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	2 cut(s)	31, 165
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.